RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 PRAM1Q96QH2 718 aa20.56■□□□□ 0.88
USE1-210ENST00000601662 LAMC1P11047 1609 aa20.56■□□□□ 0.88
USE1-210ENST00000601662 MST1RQ04912 1400 aa20.55■□□□□ 0.88
USE1-210ENST00000601662 NUTM2FA1L443 756 aa20.55■□□□□ 0.88
USE1-210ENST00000601662 DISP3Q9P2K9 1392 aa20.55■□□□□ 0.88
USE1-210ENST00000601662 SIRT1Q96EB6 747 aa20.53■□□□□ 0.88
USE1-210ENST00000601662 ORAI2Q96SN7 254 aa20.52■□□□□ 0.88
USE1-210ENST00000601662 NBPF1Q3BBV0 1214 aa20.51■□□□□ 0.87
USE1-210ENST00000601662 DDX17Q92841 729 aaKnown RBP20.51■□□□□ 0.87
USE1-210ENST00000601662 ADGRB1O14514 1584 aa20.51■□□□□ 0.87
USE1-210ENST00000601662 KNDC1Q76NI1 1749 aa20.5■□□□□ 0.87
USE1-210ENST00000601662 C1orf167Q5SNV9 1468 aa20.5■□□□□ 0.87
USE1-210ENST00000601662 NBPF8Q3BBV2 869 aa20.49■□□□□ 0.87
USE1-210ENST00000601662 PHLPP1O60346 1717 aa20.49■□□□□ 0.87
USE1-210ENST00000601662 ESCO1Q5FWF5 840 aa20.48■□□□□ 0.87
USE1-210ENST00000601662 HIRIP3Q9BW71 556 aaPredicted RBP20.47■□□□□ 0.87
USE1-210ENST00000601662 MINK1Q8N4C8 1332 aaPredicted RBP20.47■□□□□ 0.87
USE1-210ENST00000601662 DLC1Q96QB1 1528 aa20.44■□□□□ 0.86
USE1-210ENST00000601662 CDC42BPGQ6DT37 1551 aa20.43■□□□□ 0.86
USE1-210ENST00000601662 JCADQ9P266 1359 aa20.43■□□□□ 0.86
USE1-210ENST00000601662 PHF23Q9BUL5 403 aaPredicted RBP20.42■□□□□ 0.86
USE1-210ENST00000601662 AHDC1Q5TGY3 1603 aaPredicted RBP20.42■□□□□ 0.86
USE1-210ENST00000601662 MED1Q15648 1581 aaPredicted RBP20.41■□□□□ 0.86
USE1-210ENST00000601662 COL16A1Q07092 1604 aaPredicted RBP20.41■□□□□ 0.86
USE1-210ENST00000601662 FOXO3O43524 673 aa20.39■□□□□ 0.85
USE1-210ENST00000601662 XPCQ01831 940 aaPredicted RBP20.39■□□□□ 0.85
USE1-210ENST00000601662 LRRC59Q96AG4 307 aaKnown RBP20.39■□□□□ 0.85
USE1-210ENST00000601662 KIAA1210Q9ULL0 1709 aa20.39■□□□□ 0.85
USE1-210ENST00000601662 RALGAPBQ86X10 1494 aa20.38■□□□□ 0.85
USE1-210ENST00000601662 ROCK2O75116 1388 aaKnown RBP20.38■□□□□ 0.85
USE1-210ENST00000601662 NUTM2BA6NNL0 878 aaPredicted RBP20.38■□□□□ 0.85
USE1-210ENST00000601662 NUTM2EB1AL46 878 aaPredicted RBP20.38■□□□□ 0.85
USE1-210ENST00000601662 NUTM2AQ8IVF1 878 aaPredicted RBP20.38■□□□□ 0.85
USE1-210ENST00000601662 FMN2Q9NZ56 1722 aa20.36■□□□□ 0.85
USE1-210ENST00000601662 NHSL1Q5SYE7 1610 aa20.36■□□□□ 0.85
USE1-210ENST00000601662 WASLO00401 505 aaPredicted RBP20.36■□□□□ 0.85
USE1-210ENST00000601662 CARD11Q9BXL7 1154 aa20.36■□□□□ 0.85
USE1-210ENST00000601662 NPHP3Q7Z494 1330 aa20.35■□□□□ 0.85
USE1-210ENST00000601662 PHF8Q9UPP1 1060 aa20.35■□□□□ 0.85
USE1-210ENST00000601662 GPRASP1Q5JY77 1395 aa20.34■□□□□ 0.85
USE1-210ENST00000601662 SOS2Q07890 1332 aaPredicted RBP20.34■□□□□ 0.85
USE1-210ENST00000601662 ARHGEF28Q8N1W1 1705 aaKnown RBP20.34■□□□□ 0.85
USE1-210ENST00000601662 PMFBP1Q8TBY8 1022 aa20.34■□□□□ 0.85
USE1-210ENST00000601662 TRPM1Q7Z4N2 1603 aa20.34■□□□□ 0.85
USE1-210ENST00000601662 MEX3CQ5U5Q3 659 aaKnown RBP20.33■□□□□ 0.85
USE1-210ENST00000601662 ILDR2Q71H61 639 aa20.33■□□□□ 0.85
USE1-210ENST00000601662 SPATA31A6Q5VVP1 1343 aa20.32■□□□□ 0.84
USE1-210ENST00000601662 CENPJQ9HC77 1338 aaPredicted RBP20.32■□□□□ 0.84
USE1-210ENST00000601662 CDK19Q9BWU1 502 aa20.32■□□□□ 0.84
USE1-210ENST00000601662 RGPD8O14715 1765 aaPredicted RBP20.31■□□□□ 0.84
USE1-210ENST00000601662 EIF4G2P78344 907 aaKnown RBP eCLIP20.31■□□□□ 0.84
USE1-210ENST00000601662 KRT28Q7Z3Y7 464 aa20.31■□□□□ 0.84
USE1-210ENST00000601662 PRR36Q9H6K5 1346 aa20.3■□□□□ 0.84
USE1-210ENST00000601662 PSME1Q06323 249 aa20.29■□□□□ 0.84
USE1-210ENST00000601662 PNPLA6Q8IY17 1366 aa20.29■□□□□ 0.84
USE1-210ENST00000601662 ADGRB2O60241 1585 aa20.29■□□□□ 0.84
USE1-210ENST00000601662 NUDT16Q96DE0 195 aaKnown RBP20.28■□□□□ 0.84
USE1-210ENST00000601662 EIF3AQ14152 1382 aaKnown RBP20.28■□□□□ 0.84
USE1-210ENST00000601662 ANKARQ7Z5J8 1434 aa20.27■□□□□ 0.84
USE1-210ENST00000601662 SHPRHQ149N8 1683 aa20.27■□□□□ 0.84
USE1-210ENST00000601662 PLEKHG5O94827 1062 aa20.27■□□□□ 0.84
USE1-210ENST00000601662 SRPK2P78362 688 aaKnown RBP20.27■□□□□ 0.84
USE1-210ENST00000601662 LMOD2Q6P5Q4 547 aa20.26■□□□□ 0.83
USE1-210ENST00000601662 NGDNQ8NEJ9 315 aaKnown RBP20.26■□□□□ 0.83
USE1-210ENST00000601662 RGS17Q9UGC6 210 aaPredicted RBP20.26■□□□□ 0.83
USE1-210ENST00000601662 LRP6O75581 1613 aa20.26■□□□□ 0.83
USE1-210ENST00000601662 PXDNQ92626 1479 aa20.25■□□□□ 0.83
USE1-210ENST00000601662 USP32Q8NFA0 1604 aa20.25■□□□□ 0.83
USE1-210ENST00000601662 ADAMTS2O95450 1211 aa20.25■□□□□ 0.83
USE1-210ENST00000601662 CABP2Q9NPB3 220 aa20.25■□□□□ 0.83
USE1-210ENST00000601662 TULP4Q9NRJ4 1543 aa20.25■□□□□ 0.83
USE1-210ENST00000601662 KIF1AQ12756 1690 aa20.24■□□□□ 0.83
USE1-210ENST00000601662 SLC24A1O60721 1099 aa20.24■□□□□ 0.83
USE1-210ENST00000601662 USP47Q96K76 1375 aa20.23■□□□□ 0.83
USE1-210ENST00000601662 HSPA5P11021 654 aaKnown RBP20.22■□□□□ 0.83
USE1-210ENST00000601662 SPATA31A3Q5VYP0 1347 aa20.22■□□□□ 0.83
USE1-210ENST00000601662 C8orf37Q96NL8 207 aa20.21■□□□□ 0.83
USE1-210ENST00000601662 CCDC61Q9Y6R9 512 aa20.21■□□□□ 0.83
USE1-210ENST00000601662 QRICH2Q9H0J4 1663 aa20.2■□□□□ 0.82
USE1-210ENST00000601662 PAK3O75914 559 aaPredicted RBP20.19■□□□□ 0.82
USE1-210ENST00000601662 POTEAQ6S8J7 498 aa20.19■□□□□ 0.82
USE1-210ENST00000601662 EVC2Q86UK5 1308 aa20.19■□□□□ 0.82
USE1-210ENST00000601662 ATP7BP35670 1465 aa20.18■□□□□ 0.82
USE1-210ENST00000601662 ST20-MTHFSA0A0A6YYL1 179 aa20.18■□□□□ 0.82
USE1-210ENST00000601662 HAP1P54257 671 aaPredicted RBP20.17■□□□□ 0.82
USE1-210ENST00000601662 CABLES1Q8TDN4 633 aa20.17■□□□□ 0.82
USE1-210ENST00000601662 NGLY1Q96IV0 654 aa20.17■□□□□ 0.82
USE1-210ENST00000601662 ZNF316A6NFI3 1004 aaPredicted RBP20.16■□□□□ 0.82
USE1-210ENST00000601662 ACEP12821 1306 aa20.16■□□□□ 0.82
USE1-210ENST00000601662 AFF2P51816 1311 aa20.15■□□□□ 0.82
USE1-210ENST00000601662 SBNO1A3KN83 1393 aa20.15■□□□□ 0.82
USE1-210ENST00000601662 TNS3Q68CZ2 1445 aa20.15■□□□□ 0.82
USE1-210ENST00000601662 PLEKHG3A1L390 1219 aa20.14■□□□□ 0.81
USE1-210ENST00000601662 ZNF772Q68DY9 489 aaPredicted RBP20.14■□□□□ 0.81
USE1-210ENST00000601662 CABP1Q9NZU7 370 aa20.14■□□□□ 0.81
USE1-210ENST00000601662 PPIP5K1Q6PFW1 1433 aa20.13■□□□□ 0.81
USE1-210ENST00000601662 ITSN1Q15811 1721 aa20.12■□□□□ 0.81
USE1-210ENST00000601662 ARHGEF10O15013 1369 aa20.1■□□□□ 0.81
USE1-210ENST00000601662 COL22A1Q8NFW1 1626 aaPredicted RBP20.1■□□□□ 0.81
USE1-210ENST00000601662 NUTM2GQ5VZR2 741 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms