RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 EVC2Q86UK5 1308 aa13.07□□□□□ -0.32
LIG1-220ENST00000601091 FAM43AQ8N2R8 423 aa13.07□□□□□ -0.32
LIG1-220ENST00000601091 BCL2L13Q9BXK5 485 aa13.07□□□□□ -0.32
LIG1-220ENST00000601091 ARHGEF12Q9NZN5 1544 aa13.07□□□□□ -0.32
LIG1-220ENST00000601091 FRAT2O75474 233 aaPredicted RBP13.06□□□□□ -0.32
LIG1-220ENST00000601091 SHANK2Q9UPX8 1470 aa13.06□□□□□ -0.32
LIG1-220ENST00000601091 ITPRIPQ8IWB1 547 aa13.06□□□□□ -0.32
LIG1-220ENST00000601091 PRAG1Q86YV5 1406 aa13.06□□□□□ -0.32
LIG1-220ENST00000601091 PARD3Q8TEW0 1356 aa13.06□□□□□ -0.32
LIG1-220ENST00000601091 DISP3Q9P2K9 1392 aa13.06□□□□□ -0.32
LIG1-220ENST00000601091 C20orf194Q5TEA3 1177 aa13.06□□□□□ -0.32
LIG1-220ENST00000601091 PER1O15534 1290 aaPredicted RBP13.05□□□□□ -0.32
LIG1-220ENST00000601091 RNF123Q5XPI4 1314 aa13.04□□□□□ -0.32
LIG1-220ENST00000601091 SLFN5Q08AF3 891 aa13.04□□□□□ -0.32
LIG1-220ENST00000601091 TESK2Q96S53 571 aa13.04□□□□□ -0.32
LIG1-220ENST00000601091 GZF1Q9H116 711 aaPredicted RBP13.04□□□□□ -0.32
LIG1-220ENST00000601091 ZNF428Q96B54 188 aa13.03□□□□□ -0.32
LIG1-220ENST00000601091 FAM135AQ9P2D6 1515 aa13.03□□□□□ -0.32
LIG1-220ENST00000601091 LRPPRCP42704 1394 aaKnown RBP13.03□□□□□ -0.32
LIG1-220ENST00000601091 BCAR3O75815 825 aa13.03□□□□□ -0.32
LIG1-220ENST00000601091 PDE3AQ14432 1141 aa13.03□□□□□ -0.32
LIG1-220ENST00000601091 ZKSCAN2Q63HK3 967 aa13.03□□□□□ -0.32
LIG1-220ENST00000601091 TMEM132EQ6IEE7 984 aa13.03□□□□□ -0.32
LIG1-220ENST00000601091 HSCBQ8IWL3 235 aa13.03□□□□□ -0.32
LIG1-220ENST00000601091 TCP11L2Q8N4U5 519 aa13.03□□□□□ -0.32
LIG1-220ENST00000601091 PANK1Q8TE04 598 aa13.03□□□□□ -0.32
LIG1-220ENST00000601091 PRDM4Q9UKN5 801 aa13.03□□□□□ -0.32
LIG1-220ENST00000601091 SCAPERQ9BY12 1400 aa13.02□□□□□ -0.32
LIG1-220ENST00000601091 RGS22Q8NE09 1264 aa13.02□□□□□ -0.32
LIG1-220ENST00000601091 MTHFSP49914 203 aa13.02□□□□□ -0.33
LIG1-220ENST00000601091 CHRM1P11229 460 aaPredicted RBP13.01□□□□□ -0.33
LIG1-220ENST00000601091 GPATCH11Q8N954 259 aa13.01□□□□□ -0.33
LIG1-220ENST00000601091 SLC12A5Q9H2X9 1139 aa13.01□□□□□ -0.33
LIG1-220ENST00000601091 EIF4G3O43432 1585 aaKnown RBP13.01□□□□□ -0.33
LIG1-220ENST00000601091 PRDM16Q9HAZ2 1276 aa13.01□□□□□ -0.33
LIG1-220ENST00000601091 NUP160Q12769 1436 aa13.01□□□□□ -0.33
LIG1-220ENST00000601091 DENND4BO75064 1496 aaPredicted RBP13.01□□□□□ -0.33
LIG1-220ENST00000601091 GOLGA6L22H0YM25 854 aa13.01□□□□□ -0.33
LIG1-220ENST00000601091 DUSP27Q5VZP5 1158 aa13.01□□□□□ -0.33
LIG1-220ENST00000601091 ANAPC15P60006 121 aa13□□□□□ -0.33
LIG1-220ENST00000601091 HSP90AB1P08238 724 aaKnown RBP12.99□□□□□ -0.33
LIG1-220ENST00000601091 L1TD1Q5T7N2 865 aaKnown RBP12.99□□□□□ -0.33
LIG1-220ENST00000601091 MFAP1P55081 439 aaKnown RBP12.99□□□□□ -0.33
LIG1-220ENST00000601091 ZNF622Q969S3 477 aaKnown RBP eCLIP12.98□□□□□ -0.337e-7■■□□□ 12.3
LIG1-220ENST00000601091 DZIP1LQ8IYY4 767 aaKnown RBP12.98□□□□□ -0.33
LIG1-220ENST00000601091 PUS7Q96PZ0 661 aaKnown RBP12.97□□□□□ -0.33
LIG1-220ENST00000601091 KDM5BQ9UGL1 1544 aa12.97□□□□□ -0.33
LIG1-220ENST00000601091 SCAF11Q99590 1463 aaKnown RBP12.97□□□□□ -0.33
LIG1-220ENST00000601091 SYCP2Q9BX26 1530 aa12.97□□□□□ -0.33
LIG1-220ENST00000601091 MPNDQ8N594 471 aa12.97□□□□□ -0.33
LIG1-220ENST00000601091 CASC1Q6TDU7 716 aa12.96□□□□□ -0.33
LIG1-220ENST00000601091 HDGFP51858 240 aaKnown RBP12.96□□□□□ -0.33
LIG1-220ENST00000601091 MINK1Q8N4C8 1332 aaPredicted RBP12.96□□□□□ -0.34
LIG1-220ENST00000601091 DDX19BQ9UMR2 479 aa12.96□□□□□ -0.34
LIG1-220ENST00000601091 MLECQ14165 292 aa12.95□□□□□ -0.34
LIG1-220ENST00000601091 TRIM44Q96DX7 344 aaPredicted RBP12.95□□□□□ -0.34
LIG1-220ENST00000601091 CABP2Q9NPB3 220 aa12.95□□□□□ -0.34
LIG1-220ENST00000601091 DUOX2Q9NRD8 1548 aa12.95□□□□□ -0.34
LIG1-220ENST00000601091 WDR63Q8IWG1 891 aa12.95□□□□□ -0.34
LIG1-220ENST00000601091 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.95□□□□□ -0.34
LIG1-220ENST00000601091 PDCL3Q9H2J4 239 aa12.95□□□□□ -0.34
LIG1-220ENST00000601091 PLCH2O75038 1416 aa12.94□□□□□ -0.34
LIG1-220ENST00000601091 DIAPH1O60610 1272 aaKnown RBP12.94□□□□□ -0.34
LIG1-220ENST00000601091 RIPK4P57078 832 aa12.94□□□□□ -0.34
LIG1-220ENST00000601091 ADGRF5Q8IZF2 1346 aa12.94□□□□□ -0.34
LIG1-220ENST00000601091 MCCP23508 829 aa12.94□□□□□ -0.34
LIG1-220ENST00000601091 GGNBP2Q9H3C7 697 aa12.94□□□□□ -0.34
LIG1-220ENST00000601091 ADGBQ8N7X0 1667 aa12.94□□□□□ -0.34
LIG1-220ENST00000601091 NINLQ9Y2I6 1382 aa12.93□□□□□ -0.34
LIG1-220ENST00000601091 GPRASP1Q5JY77 1395 aa12.93□□□□□ -0.34
LIG1-220ENST00000601091 CEP170Q5SW79 1584 aa12.93□□□□□ -0.34
LIG1-220ENST00000601091 COL17A1Q9UMD9 1497 aaPredicted RBP12.92□□□□□ -0.34
LIG1-220ENST00000601091 A2MP01023 1474 aa12.92□□□□□ -0.34
LIG1-220ENST00000601091 NKTRP30414 1462 aaKnown RBP12.92□□□□□ -0.34
LIG1-220ENST00000601091 ABCC10Q5T3U5 1492 aa12.92□□□□□ -0.34
LIG1-220ENST00000601091 OSCARQ8IYS5 282 aa12.91□□□□□ -0.34
LIG1-220ENST00000601091 RPGRIP1LQ68CZ1 1315 aa12.91□□□□□ -0.34
LIG1-220ENST00000601091 KDM5CP41229 1560 aa12.91□□□□□ -0.34
LIG1-220ENST00000601091 MBD5Q9P267 1494 aa12.9□□□□□ -0.34
LIG1-220ENST00000601091 LMOD3Q0VAK6 560 aa12.9□□□□□ -0.34
LIG1-220ENST00000601091 PDZRN3Q9UPQ7 1066 aa12.9□□□□□ -0.34
LIG1-220ENST00000601091 NSD3Q9BZ95 1437 aa12.9□□□□□ -0.34
LIG1-220ENST00000601091 LRRIQ1Q96JM4 1722 aa12.9□□□□□ -0.34
LIG1-220ENST00000601091 TMEM51Q9NW97 253 aa12.9□□□□□ -0.34
LIG1-220ENST00000601091 GRIPAP1Q4V328 841 aa12.89□□□□□ -0.35
LIG1-220ENST00000601091 EIF2AK4Q9P2K8 1649 aaKnown RBP12.89□□□□□ -0.35
LIG1-220ENST00000601091 ELL2O00472 640 aaPredicted RBP12.89□□□□□ -0.35
LIG1-220ENST00000601091 GBP4Q96PP9 640 aa12.89□□□□□ -0.35
LIG1-220ENST00000601091 KIF16BQ96L93 1317 aa12.89□□□□□ -0.35
LIG1-220ENST00000601091 INSRP06213 1382 aa12.88□□□□□ -0.35
LIG1-220ENST00000601091 EXOSC9Q06265 439 aaKnown RBP12.88□□□□□ -0.35
LIG1-220ENST00000601091 TRAPPC8Q9Y2L5 1435 aa12.88□□□□□ -0.35
LIG1-220ENST00000601091 ASXL1Q8IXJ9 1541 aa12.88□□□□□ -0.35
LIG1-220ENST00000601091 PLEKHH1Q9ULM0 1364 aa12.88□□□□□ -0.35
LIG1-220ENST00000601091 GOLGA6L3A6NEY3 463 aa12.88□□□□□ -0.35
LIG1-220ENST00000601091 ANKRD45Q5TZF3 282 aa12.88□□□□□ -0.35
LIG1-220ENST00000601091 CT47B1P0C2W7 299 aaPredicted RBP12.87□□□□□ -0.35
LIG1-220ENST00000601091 RARSP54136 660 aaKnown RBP12.87□□□□□ -0.35
LIG1-220ENST00000601091 PPP4R3BQ5MIZ7 849 aa12.87□□□□□ -0.35
LIG1-220ENST00000601091 KDM4AO75164 1064 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 182.7 ms