RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-208ENST00000600628 FMN2Q9NZ56 1722 aa12.82□□□□□ -0.36
SSBP4-208ENST00000600628 ATF3P18847 181 aa12.82□□□□□ -0.36
SSBP4-208ENST00000600628 MED1Q15648 1581 aaPredicted RBP12.81□□□□□ -0.36
SSBP4-208ENST00000600628 WAPLQ7Z5K2 1190 aa12.8□□□□□ -0.36
SSBP4-208ENST00000600628 L3MBTL2Q969R5 705 aa12.8□□□□□ -0.36
SSBP4-208ENST00000600628 SIN3AQ96ST3 1273 aa12.8□□□□□ -0.36
SSBP4-208ENST00000600628 TRPM1Q7Z4N2 1603 aa12.79□□□□□ -0.36
SSBP4-208ENST00000600628 SHPRHQ149N8 1683 aa12.79□□□□□ -0.36
SSBP4-208ENST00000600628 STK26Q9P289 416 aa12.78□□□□□ -0.36
SSBP4-208ENST00000600628 KDM2AQ9Y2K7 1162 aa12.78□□□□□ -0.36
SSBP4-208ENST00000600628 USP32Q8NFA0 1604 aa12.77□□□□□ -0.36
SSBP4-208ENST00000600628 RGPD8O14715 1765 aaPredicted RBP12.77□□□□□ -0.36
SSBP4-208ENST00000600628 ILDR2Q71H61 639 aa12.76□□□□□ -0.37
SSBP4-208ENST00000600628 SOS2Q07890 1332 aaPredicted RBP12.75□□□□□ -0.37
SSBP4-208ENST00000600628 NBPF1Q3BBV0 1214 aa12.75□□□□□ -0.37
SSBP4-208ENST00000600628 GPRASP1Q5JY77 1395 aa12.75□□□□□ -0.37
SSBP4-208ENST00000600628 PRAM1Q96QH2 718 aa12.75□□□□□ -0.37
SSBP4-208ENST00000600628 JCADQ9P266 1359 aa12.75□□□□□ -0.37
SSBP4-208ENST00000600628 PXDNQ92626 1479 aa12.74□□□□□ -0.37
SSBP4-208ENST00000600628 ORAI2Q96SN7 254 aa12.74□□□□□ -0.37
SSBP4-208ENST00000600628 KIF1AQ12756 1690 aa12.73□□□□□ -0.37
SSBP4-208ENST00000600628 ANKARQ7Z5J8 1434 aa12.72□□□□□ -0.37
SSBP4-208ENST00000600628 TRAK1Q9UPV9 953 aa12.72□□□□□ -0.37
SSBP4-208ENST00000600628 COL22A1Q8NFW1 1626 aaPredicted RBP12.72□□□□□ -0.37
SSBP4-208ENST00000600628 CLSPNQ9HAW4 1339 aa12.71□□□□□ -0.37
SSBP4-208ENST00000600628 NBPF8Q3BBV2 869 aa12.71□□□□□ -0.37
SSBP4-208ENST00000600628 PHF23Q9BUL5 403 aaPredicted RBP12.71□□□□□ -0.37
SSBP4-208ENST00000600628 TULP4Q9NRJ4 1543 aa12.71□□□□□ -0.38
SSBP4-208ENST00000600628 LRP6O75581 1613 aa12.7□□□□□ -0.38
SSBP4-208ENST00000600628 DDX17Q92841 729 aaKnown RBP12.7□□□□□ -0.38
SSBP4-208ENST00000600628 TOPAZ1Q8N9V7 1692 aa12.7□□□□□ -0.38
SSBP4-208ENST00000600628 PNPLA6Q8IY17 1366 aa12.69□□□□□ -0.38
SSBP4-208ENST00000600628 SPATA31A6Q5VVP1 1343 aa12.69□□□□□ -0.38
SSBP4-208ENST00000600628 NEUROD1Q13562 356 aa12.69□□□□□ -0.38
SSBP4-208ENST00000600628 RGS17Q9UGC6 210 aaPredicted RBP12.69□□□□□ -0.38
SSBP4-208ENST00000600628 ATP7BP35670 1465 aa12.69□□□□□ -0.38
SSBP4-208ENST00000600628 PRR36Q9H6K5 1346 aa12.68□□□□□ -0.38
SSBP4-208ENST00000600628 RALGAPBQ86X10 1494 aa12.68□□□□□ -0.38
SSBP4-208ENST00000600628 LRRC59Q96AG4 307 aaKnown RBP12.68□□□□□ -0.38
SSBP4-208ENST00000600628 TRPM3Q9HCF6 1732 aaPredicted RBP12.68□□□□□ -0.38
SSBP4-208ENST00000600628 QRICH2Q9H0J4 1663 aa12.67□□□□□ -0.38
SSBP4-208ENST00000600628 NPHP3Q7Z494 1330 aa12.67□□□□□ -0.38
SSBP4-208ENST00000600628 WASLO00401 505 aaPredicted RBP12.67□□□□□ -0.38
SSBP4-208ENST00000600628 POGKQ9P215 609 aa12.67□□□□□ -0.38
SSBP4-208ENST00000600628 ITSN1Q15811 1721 aa12.67□□□□□ -0.38
SSBP4-208ENST00000600628 SAFB2Q14151 953 aaKnown RBP eCLIP12.66□□□□□ -0.38
SSBP4-208ENST00000600628 SOCS7O14512 581 aa12.65□□□□□ -0.38
SSBP4-208ENST00000600628 ESCO1Q5FWF5 840 aa12.65□□□□□ -0.38
SSBP4-208ENST00000600628 PCGF6Q9BYE7 350 aa12.65□□□□□ -0.38
SSBP4-208ENST00000600628 EIF3AQ14152 1382 aaKnown RBP12.65□□□□□ -0.38
SSBP4-208ENST00000600628 SBNO2Q9Y2G9 1366 aa12.65□□□□□ -0.38
SSBP4-208ENST00000600628 MINK1Q8N4C8 1332 aaPredicted RBP12.64□□□□□ -0.39
SSBP4-208ENST00000600628 ALS2Q96Q42 1657 aa12.64□□□□□ -0.39
SSBP4-208ENST00000600628 HIRIP3Q9BW71 556 aaPredicted RBP12.64□□□□□ -0.39
SSBP4-208ENST00000600628 PHF8Q9UPP1 1060 aa12.64□□□□□ -0.39
SSBP4-208ENST00000600628 TONSLQ96HA7 1378 aa12.64□□□□□ -0.39
SSBP4-208ENST00000600628 CENPJQ9HC77 1338 aaPredicted RBP12.63□□□□□ -0.39
SSBP4-208ENST00000600628 FOXO3O43524 673 aa12.63□□□□□ -0.39
SSBP4-208ENST00000600628 TIMELESSQ9UNS1 1208 aa12.63□□□□□ -0.39
SSBP4-208ENST00000600628 SBNO1A3KN83 1393 aa12.63□□□□□ -0.39
SSBP4-208ENST00000600628 POLR3AO14802 1390 aaPredicted RBP12.63□□□□□ -0.39
SSBP4-208ENST00000600628 ROCK2O75116 1388 aaKnown RBP12.63□□□□□ -0.39
SSBP4-208ENST00000600628 SPATA31A3Q5VYP0 1347 aa12.62□□□□□ -0.39
SSBP4-208ENST00000600628 MARF1Q9Y4F3 1742 aaKnown RBP12.62□□□□□ -0.39
SSBP4-208ENST00000600628 NUTM2FA1L443 756 aa12.62□□□□□ -0.39
SSBP4-208ENST00000600628 CRYBG1Q9Y4K1 1723 aa12.62□□□□□ -0.39
SSBP4-208ENST00000600628 ABCA3Q99758 1704 aa12.61□□□□□ -0.39
SSBP4-208ENST00000600628 PLEKHG3A1L390 1219 aa12.6□□□□□ -0.39
SSBP4-208ENST00000600628 NUDT16Q96DE0 195 aaKnown RBP12.6□□□□□ -0.39
SSBP4-208ENST00000600628 CDK19Q9BWU1 502 aa12.6□□□□□ -0.39
SSBP4-208ENST00000600628 TNS3Q68CZ2 1445 aa12.6□□□□□ -0.39
SSBP4-208ENST00000600628 NUTM2BA6NNL0 878 aaPredicted RBP12.59□□□□□ -0.39
SSBP4-208ENST00000600628 NUTM2EB1AL46 878 aaPredicted RBP12.59□□□□□ -0.39
SSBP4-208ENST00000600628 KRT28Q7Z3Y7 464 aa12.59□□□□□ -0.39
SSBP4-208ENST00000600628 NUTM2AQ8IVF1 878 aaPredicted RBP12.59□□□□□ -0.39
SSBP4-208ENST00000600628 MEX3CQ5U5Q3 659 aaKnown RBP12.58□□□□□ -0.4
SSBP4-208ENST00000600628 POTEAQ6S8J7 498 aa12.58□□□□□ -0.4
SSBP4-208ENST00000600628 CCDC61Q9Y6R9 512 aa12.58□□□□□ -0.4
SSBP4-208ENST00000600628 XPCQ01831 940 aaPredicted RBP12.57□□□□□ -0.4
SSBP4-208ENST00000600628 SSH2Q76I76 1423 aa12.56□□□□□ -0.4
SSBP4-208ENST00000600628 PMFBP1Q8TBY8 1022 aa12.56□□□□□ -0.4
SSBP4-208ENST00000600628 TESK2Q96S53 571 aa12.56□□□□□ -0.4
SSBP4-208ENST00000600628 ARHGEF10O15013 1369 aa12.56□□□□□ -0.4
SSBP4-208ENST00000600628 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.55□□□□□ -0.4
SSBP4-208ENST00000600628 PSME1Q06323 249 aa12.55□□□□□ -0.4
SSBP4-208ENST00000600628 ZNF772Q68DY9 489 aaPredicted RBP12.55□□□□□ -0.4
SSBP4-208ENST00000600628 FNBP4Q8N3X1 1017 aaPredicted RBP12.55□□□□□ -0.4
SSBP4-208ENST00000600628 AKAP12Q02952 1782 aa12.55□□□□□ -0.4
SSBP4-208ENST00000600628 PUS7Q96PZ0 661 aaKnown RBP12.54□□□□□ -0.4
SSBP4-208ENST00000600628 CARD11Q9BXL7 1154 aa12.54□□□□□ -0.4
SSBP4-208ENST00000600628 EP400Q96L91 3159 aa12.54□□□□□ -0.4
SSBP4-208ENST00000600628 BRD4O60885 1362 aaPredicted RBP12.54□□□□□ -0.4
SSBP4-208ENST00000600628 CPSF1Q10570 1443 aaKnown RBP12.54□□□□□ -0.4
SSBP4-208ENST00000600628 PPIP5K1Q6PFW1 1433 aa12.54□□□□□ -0.4
SSBP4-208ENST00000600628 BCL9LQ86UU0 1499 aa12.53□□□□□ -0.4
SSBP4-208ENST00000600628 SLIT2O94813 1529 aa12.53□□□□□ -0.4
SSBP4-208ENST00000600628 ACEP12821 1306 aa12.53□□□□□ -0.4
SSBP4-208ENST00000600628 EVC2Q86UK5 1308 aa12.53□□□□□ -0.4
SSBP4-208ENST00000600628 NRKQ7Z2Y5 1582 aa12.52□□□□□ -0.4
SSBP4-208ENST00000600628 ADAMTS2O95450 1211 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms