RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 WAPLQ7Z5K2 1190 aa23.58■■□□□ 1.37
USHBP1-210ENST00000600286 GPRASP1Q5JY77 1395 aa23.57■■□□□ 1.36
USHBP1-210ENST00000600286 ROBO2Q9HCK4 1378 aa23.57■■□□□ 1.36
USHBP1-210ENST00000600286 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.57■■□□□ 1.36
USHBP1-210ENST00000600286 TRPM1Q7Z4N2 1603 aa23.57■■□□□ 1.36
USHBP1-210ENST00000600286 ASXL1Q8IXJ9 1541 aa23.57■■□□□ 1.36
USHBP1-210ENST00000600286 C19orf44Q9H6X5 657 aa23.56■■□□□ 1.36
USHBP1-210ENST00000600286 MSH6P52701 1360 aa23.55■■□□□ 1.36
USHBP1-210ENST00000600286 SAFB2Q14151 953 aaKnown RBP eCLIP23.55■■□□□ 1.36
USHBP1-210ENST00000600286 ATF3P18847 181 aa23.54■■□□□ 1.36
USHBP1-210ENST00000600286 DLC1Q96QB1 1528 aa23.54■■□□□ 1.36
USHBP1-210ENST00000600286 CENPJQ9HC77 1338 aaPredicted RBP23.53■■□□□ 1.36
USHBP1-210ENST00000600286 SLC24A1O60721 1099 aa23.52■■□□□ 1.36
USHBP1-210ENST00000600286 CADPS2Q86UW7 1296 aa23.51■■□□□ 1.35
USHBP1-210ENST00000600286 PHLPP1O60346 1717 aa23.5■■□□□ 1.35
USHBP1-210ENST00000600286 COL16A1Q07092 1604 aaPredicted RBP23.48■■□□□ 1.35
USHBP1-210ENST00000600286 KNDC1Q76NI1 1749 aa23.48■■□□□ 1.35
USHBP1-210ENST00000600286 SLAIN2Q9P270 581 aa23.48■■□□□ 1.35
USHBP1-210ENST00000600286 EIF4G2P78344 907 aaKnown RBP eCLIP23.47■■□□□ 1.35
USHBP1-210ENST00000600286 MINK1Q8N4C8 1332 aaPredicted RBP23.47■■□□□ 1.35
USHBP1-210ENST00000600286 PLEKHH1Q9ULM0 1364 aa23.47■■□□□ 1.35
USHBP1-210ENST00000600286 ADGRL3Q9HAR2 1447 aa23.46■■□□□ 1.35
USHBP1-210ENST00000600286 RGS17Q9UGC6 210 aaPredicted RBP23.45■■□□□ 1.34
USHBP1-210ENST00000600286 USP47Q96K76 1375 aa23.44■■□□□ 1.34
USHBP1-210ENST00000600286 ST20-MTHFSA0A0A6YYL1 179 aa23.43■■□□□ 1.34
USHBP1-210ENST00000600286 HIRIP3Q9BW71 556 aaPredicted RBP23.43■■□□□ 1.34
USHBP1-210ENST00000600286 AHDC1Q5TGY3 1603 aaPredicted RBP23.43■■□□□ 1.34
USHBP1-210ENST00000600286 DCCP43146 1447 aa23.42■■□□□ 1.34
USHBP1-210ENST00000600286 NALCNQ8IZF0 1738 aa23.41■■□□□ 1.34
USHBP1-210ENST00000600286 EVC2Q86UK5 1308 aa23.4■■□□□ 1.34
USHBP1-210ENST00000600286 WASLO00401 505 aaPredicted RBP23.4■■□□□ 1.34
USHBP1-210ENST00000600286 ARHGEF28Q8N1W1 1705 aaKnown RBP23.38■■□□□ 1.33
USHBP1-210ENST00000600286 SRPK2P78362 688 aaKnown RBP23.37■■□□□ 1.33
USHBP1-210ENST00000600286 CDK19Q9BWU1 502 aa23.37■■□□□ 1.33
USHBP1-210ENST00000600286 SHPRHQ149N8 1683 aa23.36■■□□□ 1.33
USHBP1-210ENST00000600286 NHSL1Q5SYE7 1610 aa23.35■■□□□ 1.33
USHBP1-210ENST00000600286 HSPA5P11021 654 aaKnown RBP23.35■■□□□ 1.33
USHBP1-210ENST00000600286 TMF1P82094 1093 aa23.35■■□□□ 1.33
USHBP1-210ENST00000600286 CDCA8Q53HL2 280 aa23.35■■□□□ 1.33
USHBP1-210ENST00000600286 SBNO2Q9Y2G9 1366 aa23.35■■□□□ 1.33
USHBP1-210ENST00000600286 MST1RQ04912 1400 aa23.34■■□□□ 1.33
USHBP1-210ENST00000600286 NUTM2FA1L443 756 aa23.34■■□□□ 1.33
USHBP1-210ENST00000600286 PHF23Q9BUL5 403 aaPredicted RBP23.34■■□□□ 1.33
USHBP1-210ENST00000600286 JCADQ9P266 1359 aa23.32■■□□□ 1.32
USHBP1-210ENST00000600286 CDC42BPGQ6DT37 1551 aa23.31■■□□□ 1.32
USHBP1-210ENST00000600286 ESCO1Q5FWF5 840 aa23.31■■□□□ 1.32
USHBP1-210ENST00000600286 BRINP3Q76B58 766 aa23.3■■□□□ 1.32
USHBP1-210ENST00000600286 TESK2Q96S53 571 aa23.3■■□□□ 1.32
USHBP1-210ENST00000600286 NUDT16Q96DE0 195 aaKnown RBP23.29■■□□□ 1.32
USHBP1-210ENST00000600286 LRP6O75581 1613 aa23.29■■□□□ 1.32
USHBP1-210ENST00000600286 QRICH2Q9H0J4 1663 aa23.28■■□□□ 1.32
USHBP1-210ENST00000600286 ADGRB2O60241 1585 aa23.28■■□□□ 1.32
USHBP1-210ENST00000600286 PUS7Q96PZ0 661 aaKnown RBP23.28■■□□□ 1.32
USHBP1-210ENST00000600286 CABP2Q9NPB3 220 aa23.28■■□□□ 1.32
USHBP1-210ENST00000600286 ANKARQ7Z5J8 1434 aa23.27■■□□□ 1.32
USHBP1-210ENST00000600286 CCDC61Q9Y6R9 512 aa23.27■■□□□ 1.32
USHBP1-210ENST00000600286 C1orf167Q5SNV9 1468 aa23.27■■□□□ 1.32
USHBP1-210ENST00000600286 POTEAQ6S8J7 498 aa23.24■■□□□ 1.31
USHBP1-210ENST00000600286 PHF8Q9UPP1 1060 aa23.24■■□□□ 1.31
USHBP1-210ENST00000600286 ATAD2Q6PL18 1390 aa23.24■■□□□ 1.31
USHBP1-210ENST00000600286 ORAI2Q96SN7 254 aa23.23■■□□□ 1.31
USHBP1-210ENST00000600286 TULP4Q9NRJ4 1543 aa23.23■■□□□ 1.31
USHBP1-210ENST00000600286 NGDNQ8NEJ9 315 aaKnown RBP23.21■■□□□ 1.31
USHBP1-210ENST00000600286 SPATA31A6Q5VVP1 1343 aa23.21■■□□□ 1.31
USHBP1-210ENST00000600286 TMC1Q8TDI8 760 aa23.2■■□□□ 1.3
USHBP1-210ENST00000600286 POLR3GLQ9BT43 218 aa23.2■■□□□ 1.3
USHBP1-210ENST00000600286 FMN2Q9NZ56 1722 aa23.19■■□□□ 1.3
USHBP1-210ENST00000600286 PRR36Q9H6K5 1346 aa23.19■■□□□ 1.3
USHBP1-210ENST00000600286 PMFBP1Q8TBY8 1022 aa23.19■■□□□ 1.3
USHBP1-210ENST00000600286 PSME1Q06323 249 aa23.18■■□□□ 1.3
USHBP1-210ENST00000600286 NPHP3Q7Z494 1330 aa23.17■■□□□ 1.3
USHBP1-210ENST00000600286 PLEKHG3A1L390 1219 aa23.17■■□□□ 1.3
USHBP1-210ENST00000600286 CABP1Q9NZU7 370 aa23.17■■□□□ 1.3
USHBP1-210ENST00000600286 FOXO3O43524 673 aa23.16■■□□□ 1.3
USHBP1-210ENST00000600286 PPIP5K1Q6PFW1 1433 aa23.15■■□□□ 1.3
USHBP1-210ENST00000600286 ATP7BP35670 1465 aa23.14■■□□□ 1.29
USHBP1-210ENST00000600286 ZNF692Q9BU19 519 aaPredicted RBP23.14■■□□□ 1.29
USHBP1-210ENST00000600286 NINLQ9Y2I6 1382 aa23.14■■□□□ 1.29
USHBP1-210ENST00000600286 HDGFL2Q7Z4V5 671 aaPredicted RBP23.13■■□□□ 1.29
USHBP1-210ENST00000600286 TERF2IPQ9NYB0 399 aa23.13■■□□□ 1.29
USHBP1-210ENST00000600286 KRT28Q7Z3Y7 464 aa23.12■■□□□ 1.29
USHBP1-210ENST00000600286 ACEP12821 1306 aa23.11■■□□□ 1.29
USHBP1-210ENST00000600286 DDX17Q92841 729 aaKnown RBP23.11■■□□□ 1.29
USHBP1-210ENST00000600286 SLC12A5Q9H2X9 1139 aa23.1■■□□□ 1.29
USHBP1-210ENST00000600286 LRRC59Q96AG4 307 aaKnown RBP23.09■■□□□ 1.29
USHBP1-210ENST00000600286 PNPLA6Q8IY17 1366 aa23.09■■□□□ 1.29
USHBP1-210ENST00000600286 KIF1AQ12756 1690 aa23.08■■□□□ 1.29
USHBP1-210ENST00000600286 ITSN1Q15811 1721 aa23.07■■□□□ 1.28
USHBP1-210ENST00000600286 USP32Q8NFA0 1604 aa23.07■■□□□ 1.28
USHBP1-210ENST00000600286 COL22A1Q8NFW1 1626 aaPredicted RBP23.07■■□□□ 1.28
USHBP1-210ENST00000600286 SOS2Q07890 1332 aaPredicted RBP23.07■■□□□ 1.28
USHBP1-210ENST00000600286 PAK3O75914 559 aaPredicted RBP23.06■■□□□ 1.28
USHBP1-210ENST00000600286 POLR3AO14802 1390 aaPredicted RBP23.05■■□□□ 1.28
USHBP1-210ENST00000600286 C11orf95C9JLR9 678 aaPredicted RBP23.05■■□□□ 1.28
USHBP1-210ENST00000600286 XPCQ01831 940 aaPredicted RBP23.05■■□□□ 1.28
USHBP1-210ENST00000600286 KIF7Q2M1P5 1343 aa23.05■■□□□ 1.28
USHBP1-210ENST00000600286 BRD4O60885 1362 aaPredicted RBP23.04■■□□□ 1.28
USHBP1-210ENST00000600286 LMOD2Q6P5Q4 547 aa23.03■■□□□ 1.28
USHBP1-210ENST00000600286 RGPD8O14715 1765 aaPredicted RBP23.03■■□□□ 1.28
USHBP1-210ENST00000600286 KTN1Q86UP2 1357 aaKnown RBP23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms