RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 WAPLQ7Z5K2 1190 aa23.23■■□□□ 1.31
VRK3-221ENST00000600284 DDX17Q92841 729 aaKnown RBP23.23■■□□□ 1.31
VRK3-221ENST00000600284 YTHDC2Q9H6S0 1430 aaKnown RBP23.23■■□□□ 1.31
VRK3-221ENST00000600284 ZNF772Q68DY9 489 aaPredicted RBP23.22■■□□□ 1.31
VRK3-221ENST00000600284 CDC42BPGQ6DT37 1551 aa23.22■■□□□ 1.31
VRK3-221ENST00000600284 LAMC1P11047 1609 aa23.22■■□□□ 1.31
VRK3-221ENST00000600284 STAC3Q96MF2 364 aa23.21■■□□□ 1.31
VRK3-221ENST00000600284 SOS2Q07890 1332 aaPredicted RBP23.21■■□□□ 1.31
VRK3-221ENST00000600284 DHX57Q6P158 1386 aaKnown RBP23.21■■□□□ 1.31
VRK3-221ENST00000600284 KNDC1Q76NI1 1749 aa23.2■■□□□ 1.3
VRK3-221ENST00000600284 CFAP70Q5T0N1 1121 aa23.2■■□□□ 1.3
VRK3-221ENST00000600284 PNPLA6Q8IY17 1366 aa23.19■■□□□ 1.3
VRK3-221ENST00000600284 NUTM2BA6NNL0 878 aaPredicted RBP23.19■■□□□ 1.3
VRK3-221ENST00000600284 NUTM2EB1AL46 878 aaPredicted RBP23.19■■□□□ 1.3
VRK3-221ENST00000600284 NUTM2AQ8IVF1 878 aaPredicted RBP23.19■■□□□ 1.3
VRK3-221ENST00000600284 ESCO1Q5FWF5 840 aa23.17■■□□□ 1.3
VRK3-221ENST00000600284 PLEKHH1Q9ULM0 1364 aa23.16■■□□□ 1.3
VRK3-221ENST00000600284 NPHP3Q7Z494 1330 aa23.15■■□□□ 1.3
VRK3-221ENST00000600284 DCAF11Q8TEB1 546 aa23.13■■□□□ 1.29
VRK3-221ENST00000600284 DLC1Q96QB1 1528 aa23.09■■□□□ 1.29
VRK3-221ENST00000600284 FOXO3O43524 673 aa23.09■■□□□ 1.29
VRK3-221ENST00000600284 KDM2AQ9Y2K7 1162 aa23.09■■□□□ 1.29
VRK3-221ENST00000600284 AFF2P51816 1311 aa23.08■■□□□ 1.29
VRK3-221ENST00000600284 NUTM2FA1L443 756 aa23.08■■□□□ 1.29
VRK3-221ENST00000600284 PRAM1Q96QH2 718 aa23.08■■□□□ 1.29
VRK3-221ENST00000600284 RXRBP28702 533 aa23.07■■□□□ 1.28
VRK3-221ENST00000600284 C8orf37Q96NL8 207 aa23.07■■□□□ 1.28
VRK3-221ENST00000600284 POGKQ9P215 609 aa23.07■■□□□ 1.28
VRK3-221ENST00000600284 ADGRB1O14514 1584 aa23.06■■□□□ 1.28
VRK3-221ENST00000600284 PXDNQ92626 1479 aa23.06■■□□□ 1.28
VRK3-221ENST00000600284 FMN2Q9NZ56 1722 aa23.06■■□□□ 1.28
VRK3-221ENST00000600284 ADAMTS2O95450 1211 aa23.03■■□□□ 1.28
VRK3-221ENST00000600284 NGLY1Q96IV0 654 aa23.03■■□□□ 1.28
VRK3-221ENST00000600284 COL22A1Q8NFW1 1626 aaPredicted RBP23.03■■□□□ 1.28
VRK3-221ENST00000600284 SAFB2Q14151 953 aaKnown RBP eCLIP23.02■■□□□ 1.28
VRK3-221ENST00000600284 TRAK1Q9UPV9 953 aa23.02■■□□□ 1.28
VRK3-221ENST00000600284 CDK12Q9NYV4 1490 aaPredicted RBP23.01■■□□□ 1.27
VRK3-221ENST00000600284 QTRT2Q9H974 415 aaKnown RBP23.01■■□□□ 1.27
VRK3-221ENST00000600284 KIF1AQ12756 1690 aa23■■□□□ 1.27
VRK3-221ENST00000600284 XPCQ01831 940 aaPredicted RBP23■■□□□ 1.27
VRK3-221ENST00000600284 PHF8Q9UPP1 1060 aa23■■□□□ 1.27
VRK3-221ENST00000600284 KRT28Q7Z3Y7 464 aa22.99■■□□□ 1.27
VRK3-221ENST00000600284 ANKARQ7Z5J8 1434 aa22.99■■□□□ 1.27
VRK3-221ENST00000600284 RBM6P78332 1123 aaKnown RBP22.98■■□□□ 1.27
VRK3-221ENST00000600284 PSME1Q06323 249 aa22.98■■□□□ 1.27
VRK3-221ENST00000600284 FNBP4Q8N3X1 1017 aaPredicted RBP22.98■■□□□ 1.27
VRK3-221ENST00000600284 SPATA31A3Q5VYP0 1347 aa22.98■■□□□ 1.27
VRK3-221ENST00000600284 ADGRB2O60241 1585 aa22.97■■□□□ 1.27
VRK3-221ENST00000600284 EIF3AQ14152 1382 aaKnown RBP22.95■■□□□ 1.26
VRK3-221ENST00000600284 USP21Q9UK80 565 aa22.95■■□□□ 1.26
VRK3-221ENST00000600284 TRPC5Q9UL62 973 aaPredicted RBP22.93■■□□□ 1.26
VRK3-221ENST00000600284 SBNO1A3KN83 1393 aa22.92■■□□□ 1.26
VRK3-221ENST00000600284 MINK1Q8N4C8 1332 aaPredicted RBP22.92■■□□□ 1.26
VRK3-221ENST00000600284 WASLO00401 505 aaPredicted RBP22.92■■□□□ 1.26
VRK3-221ENST00000600284 HIRIP3Q9BW71 556 aaPredicted RBP22.92■■□□□ 1.26
VRK3-221ENST00000600284 RGPD8O14715 1765 aaPredicted RBP22.91■■□□□ 1.26
VRK3-221ENST00000600284 TNS3Q68CZ2 1445 aa22.9■■□□□ 1.26
VRK3-221ENST00000600284 PMFBP1Q8TBY8 1022 aa22.88■■□□□ 1.25
VRK3-221ENST00000600284 UPF1Q92900 1129 aaKnown RBP eCLIP22.88■■□□□ 1.25
VRK3-221ENST00000600284 USP32Q8NFA0 1604 aa22.88■■□□□ 1.25
VRK3-221ENST00000600284 TULP4Q9NRJ4 1543 aa22.87■■□□□ 1.25
VRK3-221ENST00000600284 KIAA1210Q9ULL0 1709 aa22.87■■□□□ 1.25
VRK3-221ENST00000600284 ARHGEF10O15013 1369 aa22.87■■□□□ 1.25
VRK3-221ENST00000600284 RGS12O14924 1447 aa22.86■■□□□ 1.25
VRK3-221ENST00000600284 ATRNO75882 1429 aa22.86■■□□□ 1.25
VRK3-221ENST00000600284 BCL9LQ86UU0 1499 aa22.85■■□□□ 1.25
VRK3-221ENST00000600284 PRR36Q9H6K5 1346 aa22.85■■□□□ 1.25
VRK3-221ENST00000600284 GPRASP1Q5JY77 1395 aa22.85■■□□□ 1.25
VRK3-221ENST00000600284 MARF1Q9Y4F3 1742 aaKnown RBP22.85■■□□□ 1.25
VRK3-221ENST00000600284 ARHGEF28Q8N1W1 1705 aaKnown RBP22.84■■□□□ 1.25
VRK3-221ENST00000600284 HAP1P54257 671 aaPredicted RBP22.82■■□□□ 1.24
VRK3-221ENST00000600284 NBPF1Q3BBV0 1214 aa22.82■■□□□ 1.24
VRK3-221ENST00000600284 LMOD2Q6P5Q4 547 aa22.82■■□□□ 1.24
VRK3-221ENST00000600284 UNC5CLQ8IV45 518 aa22.81■■□□□ 1.24
VRK3-221ENST00000600284 SLIT2O94813 1529 aa22.81■■□□□ 1.24
VRK3-221ENST00000600284 NGDNQ8NEJ9 315 aaKnown RBP22.8■■□□□ 1.24
VRK3-221ENST00000600284 L3MBTL2Q969R5 705 aa22.8■■□□□ 1.24
VRK3-221ENST00000600284 NUDT16Q96DE0 195 aaKnown RBP22.8■■□□□ 1.24
VRK3-221ENST00000600284 CABLES1Q8TDN4 633 aa22.79■■□□□ 1.24
VRK3-221ENST00000600284 GJD4Q96KN9 370 aaPredicted RBP22.79■■□□□ 1.24
VRK3-221ENST00000600284 CDK19Q9BWU1 502 aa22.79■■□□□ 1.24
VRK3-221ENST00000600284 ATP7BP35670 1465 aa22.77■■□□□ 1.24
VRK3-221ENST00000600284 SIN3AQ96ST3 1273 aa22.76■■□□□ 1.23
VRK3-221ENST00000600284 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.76■■□□□ 1.23
VRK3-221ENST00000600284 TRPM3Q9HCF6 1732 aaPredicted RBP22.75■■□□□ 1.23
VRK3-221ENST00000600284 CCDC61Q9Y6R9 512 aa22.75■■□□□ 1.23
VRK3-221ENST00000600284 CENPJQ9HC77 1338 aaPredicted RBP22.73■■□□□ 1.23
VRK3-221ENST00000600284 ITSN1Q15811 1721 aa22.73■■□□□ 1.23
VRK3-221ENST00000600284 ATAD2Q6PL18 1390 aa22.73■■□□□ 1.23
VRK3-221ENST00000600284 PLEKHG3A1L390 1219 aa22.72■■□□□ 1.23
VRK3-221ENST00000600284 NEUROD1Q13562 356 aa22.72■■□□□ 1.23
VRK3-221ENST00000600284 ALS2Q96Q42 1657 aa22.71■■□□□ 1.23
VRK3-221ENST00000600284 FAM83GA6ND36 823 aa22.71■■□□□ 1.23
VRK3-221ENST00000600284 PAK3O75914 559 aaPredicted RBP22.71■■□□□ 1.23
VRK3-221ENST00000600284 PLEKHG5O94827 1062 aa22.71■■□□□ 1.23
VRK3-221ENST00000600284 VPS72Q15906 364 aa22.71■■□□□ 1.23
VRK3-221ENST00000600284 POLR3AO14802 1390 aaPredicted RBP22.71■■□□□ 1.23
VRK3-221ENST00000600284 RALGAPBQ86X10 1494 aa22.7■■□□□ 1.22
VRK3-221ENST00000600284 ABCA3Q99758 1704 aa22.69■■□□□ 1.22
VRK3-221ENST00000600284 NBPF8Q3BBV2 869 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms