RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 BCL9LQ86UU0 1499 aa9.28□□□□□ -0.92
VRK3-220ENST00000600259 HFM1A2PYH4 1435 aa9.28□□□□□ -0.92
VRK3-220ENST00000600259 ADGRF5Q8IZF2 1346 aa9.28□□□□□ -0.92
VRK3-220ENST00000600259 MYOM2P54296 1465 aa9.28□□□□□ -0.92
VRK3-220ENST00000600259 FOXO3O43524 673 aa9.27□□□□□ -0.93
VRK3-220ENST00000600259 WAPLQ7Z5K2 1190 aa9.27□□□□□ -0.93
VRK3-220ENST00000600259 ESCO1Q5FWF5 840 aa9.26□□□□□ -0.93
VRK3-220ENST00000600259 SLC4A1APQ9BWU0 796 aaKnown RBP9.26□□□□□ -0.93
VRK3-220ENST00000600259 PXDNQ92626 1479 aa9.26□□□□□ -0.93
VRK3-220ENST00000600259 NPHP3Q7Z494 1330 aa9.26□□□□□ -0.93
VRK3-220ENST00000600259 ATAD2Q6PL18 1390 aa9.25□□□□□ -0.93
VRK3-220ENST00000600259 ABCC11Q96J66 1382 aa9.25□□□□□ -0.93
VRK3-220ENST00000600259 XPCQ01831 940 aaPredicted RBP9.25□□□□□ -0.93
VRK3-220ENST00000600259 GJD4Q96KN9 370 aaPredicted RBP9.25□□□□□ -0.93
VRK3-220ENST00000600259 COL22A1Q8NFW1 1626 aaPredicted RBP9.24□□□□□ -0.93
VRK3-220ENST00000600259 TMEM132EQ6IEE7 984 aa9.24□□□□□ -0.93
VRK3-220ENST00000600259 LRPPRCP42704 1394 aaKnown RBP9.24□□□□□ -0.93
VRK3-220ENST00000600259 PLEKHH1Q9ULM0 1364 aa9.24□□□□□ -0.93
VRK3-220ENST00000600259 TECPR2O15040 1411 aa9.23□□□□□ -0.93
VRK3-220ENST00000600259 SPATA31E1Q6ZUB1 1445 aa9.23□□□□□ -0.93
VRK3-220ENST00000600259 NUTM2FA1L443 756 aa9.23□□□□□ -0.93
VRK3-220ENST00000600259 RGL3Q3MIN7 710 aa9.23□□□□□ -0.93
VRK3-220ENST00000600259 CCDC125Q86Z20 511 aa9.23□□□□□ -0.93
VRK3-220ENST00000600259 SIRT1Q96EB6 747 aa9.23□□□□□ -0.93
VRK3-220ENST00000600259 STK26Q9P289 416 aa9.23□□□□□ -0.93
VRK3-220ENST00000600259 KIF1BO60333 1816 aa9.23□□□□□ -0.93
VRK3-220ENST00000600259 SPATA31A3Q5VYP0 1347 aa9.23□□□□□ -0.93
VRK3-220ENST00000600259 EP400Q96L91 3159 aa9.22□□□□□ -0.93
VRK3-220ENST00000600259 UNC5CLQ8IV45 518 aa9.22□□□□□ -0.93
VRK3-220ENST00000600259 PIAS4Q8N2W9 510 aaPredicted RBP9.22□□□□□ -0.93
VRK3-220ENST00000600259 SLIT2O94813 1529 aa9.21□□□□□ -0.93
VRK3-220ENST00000600259 CDC42BPGQ6DT37 1551 aa9.21□□□□□ -0.93
VRK3-220ENST00000600259 ONECUT3O60422 494 aaPredicted RBP9.21□□□□□ -0.94
VRK3-220ENST00000600259 KRT28Q7Z3Y7 464 aa9.21□□□□□ -0.94
VRK3-220ENST00000600259 MPHOSPH9Q99550 1183 aa9.21□□□□□ -0.94
VRK3-220ENST00000600259 ZRANB1Q9UGI0 708 aa9.21□□□□□ -0.94
VRK3-220ENST00000600259 ANKRD30BQ9BXX2 1392 aa9.21□□□□□ -0.94
VRK3-220ENST00000600259 PPLO60437 1756 aa9.2□□□□□ -0.94
VRK3-220ENST00000600259 C14orf93Q9H972 538 aaKnown RBP9.2□□□□□ -0.94
VRK3-220ENST00000600259 PIK3C2GO75747 1445 aa9.18□□□□□ -0.94
VRK3-220ENST00000600259 RALGAPBQ86X10 1494 aa9.18□□□□□ -0.94
VRK3-220ENST00000600259 CABLES1Q8TDN4 633 aa9.18□□□□□ -0.94
VRK3-220ENST00000600259 YTHDC2Q9H6S0 1430 aaKnown RBP9.18□□□□□ -0.94
VRK3-220ENST00000600259 PHF8Q9UPP1 1060 aa9.18□□□□□ -0.94
VRK3-220ENST00000600259 GLI3P10071 1580 aa9.17□□□□□ -0.94
VRK3-220ENST00000600259 CCDC144AA2RUR9 1427 aa9.17□□□□□ -0.94
VRK3-220ENST00000600259 VPS72Q15906 364 aa9.17□□□□□ -0.94
VRK3-220ENST00000600259 CFAP70Q5T0N1 1121 aa9.17□□□□□ -0.94
VRK3-220ENST00000600259 DEFB132Q7Z7B7 95 aa9.17□□□□□ -0.94
VRK3-220ENST00000600259 SEPT12Q8IYM1 358 aa9.17□□□□□ -0.94
VRK3-220ENST00000600259 BLMP54132 1417 aaPredicted RBP9.16□□□□□ -0.94
VRK3-220ENST00000600259 FAM83GA6ND36 823 aa9.16□□□□□ -0.94
VRK3-220ENST00000600259 SBNO1A3KN83 1393 aa9.15□□□□□ -0.94
VRK3-220ENST00000600259 PSME1Q06323 249 aa9.15□□□□□ -0.94
VRK3-220ENST00000600259 NRXN1Q9ULB1 1477 aa9.15□□□□□ -0.95
VRK3-220ENST00000600259 MARF1Q9Y4F3 1742 aaKnown RBP9.14□□□□□ -0.95
VRK3-220ENST00000600259 PRAM1Q96QH2 718 aa9.14□□□□□ -0.95
VRK3-220ENST00000600259 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.14□□□□□ -0.95
VRK3-220ENST00000600259 FMN2Q9NZ56 1722 aa9.14□□□□□ -0.95
VRK3-220ENST00000600259 TNS3Q68CZ2 1445 aa9.14□□□□□ -0.95
VRK3-220ENST00000600259 DHX57Q6P158 1386 aaKnown RBP9.13□□□□□ -0.95
VRK3-220ENST00000600259 IFT172Q9UG01 1749 aa9.13□□□□□ -0.95
VRK3-220ENST00000600259 PRR36Q9H6K5 1346 aa9.12□□□□□ -0.95
VRK3-220ENST00000600259 KNDC1Q76NI1 1749 aa9.12□□□□□ -0.95
VRK3-220ENST00000600259 SAFB2Q14151 953 aaKnown RBP eCLIP9.12□□□□□ -0.95
VRK3-220ENST00000600259 KRT27Q7Z3Y8 459 aa9.12□□□□□ -0.95
VRK3-220ENST00000600259 PMFBP1Q8TBY8 1022 aa9.12□□□□□ -0.95
VRK3-220ENST00000600259 USP32Q8NFA0 1604 aa9.12□□□□□ -0.95
VRK3-220ENST00000600259 ARHGEF10O15013 1369 aa9.11□□□□□ -0.95
VRK3-220ENST00000600259 KIF1AQ12756 1690 aa9.1□□□□□ -0.95
VRK3-220ENST00000600259 PLEKHG5O94827 1062 aa9.1□□□□□ -0.95
VRK3-220ENST00000600259 LMOD2Q6P5Q4 547 aa9.1□□□□□ -0.95
VRK3-220ENST00000600259 ANKARQ7Z5J8 1434 aa9.1□□□□□ -0.95
VRK3-220ENST00000600259 BRWD3Q6RI45 1802 aa9.1□□□□□ -0.95
VRK3-220ENST00000600259 HAP1P54257 671 aaPredicted RBP9.09□□□□□ -0.95
VRK3-220ENST00000600259 FAM98CQ17RN3 349 aaKnown RBP9.09□□□□□ -0.95
VRK3-220ENST00000600259 BTG4Q9NY30 223 aa9.09□□□□□ -0.95
VRK3-220ENST00000600259 POGKQ9P215 609 aa9.09□□□□□ -0.95
VRK3-220ENST00000600259 CCDC9Q9Y3X0 531 aaKnown RBP9.09□□□□□ -0.95
VRK3-220ENST00000600259 DLC1Q96QB1 1528 aa9.09□□□□□ -0.95
VRK3-220ENST00000600259 RGPD8O14715 1765 aaPredicted RBP9.09□□□□□ -0.95
VRK3-220ENST00000600259 SPATA31A5Q5VU36 1347 aa9.08□□□□□ -0.96
VRK3-220ENST00000600259 SPATA31A7Q8IWB4 1347 aa9.08□□□□□ -0.96
VRK3-220ENST00000600259 ACIN1Q9UKV3 1341 aaKnown RBP9.08□□□□□ -0.96
VRK3-220ENST00000600259 ADGRB1O14514 1584 aa9.08□□□□□ -0.96
VRK3-220ENST00000600259 WASLO00401 505 aaPredicted RBP9.08□□□□□ -0.96
VRK3-220ENST00000600259 HRCP23327 699 aa9.08□□□□□ -0.96
VRK3-220ENST00000600259 SF3B2Q13435 895 aaKnown RBP9.08□□□□□ -0.96
VRK3-220ENST00000600259 HIRIP3Q9BW71 556 aaPredicted RBP9.08□□□□□ -0.96
VRK3-220ENST00000600259 TRAK1Q9UPV9 953 aa9.08□□□□□ -0.96
VRK3-220ENST00000600259 PSDA5PKW4 1024 aaPredicted RBP9.07□□□□□ -0.96
VRK3-220ENST00000600259 EN1Q05925 392 aaPredicted RBP9.07□□□□□ -0.96
VRK3-220ENST00000600259 FAM182BQ5T319 152 aa9.07□□□□□ -0.96
VRK3-220ENST00000600259 NWD2Q9ULI1 1742 aa9.07□□□□□ -0.96
VRK3-220ENST00000600259 MINK1Q8N4C8 1332 aaPredicted RBP9.06□□□□□ -0.96
VRK3-220ENST00000600259 BAG6P46379 1132 aa9.06□□□□□ -0.96
VRK3-220ENST00000600259 TRPM3Q9HCF6 1732 aaPredicted RBP9.05□□□□□ -0.96
VRK3-220ENST00000600259 PLCH1Q4KWH8 1693 aa9.05□□□□□ -0.96
VRK3-220ENST00000600259 ADGRB2O60241 1585 aa9.05□□□□□ -0.96
VRK3-220ENST00000600259 GPRASP1Q5JY77 1395 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms