RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 IFT172Q9UG01 1749 aa18.57■□□□□ 0.56
UPF1-208ENST00000600012 RBM6P78332 1123 aaKnown RBP18.56■□□□□ 0.56
UPF1-208ENST00000600012 RGS12O14924 1447 aa18.56■□□□□ 0.56
UPF1-208ENST00000600012 COL22A1Q8NFW1 1626 aaPredicted RBP18.56■□□□□ 0.56
UPF1-208ENST00000600012 FOXD1Q16676 465 aa18.55■□□□□ 0.56
UPF1-208ENST00000600012 QTRT2Q9H974 415 aaKnown RBP18.55■□□□□ 0.56
UPF1-208ENST00000600012 ADAMTS2O95450 1211 aa18.54■□□□□ 0.56
UPF1-208ENST00000600012 NGLY1Q96IV0 654 aa18.54■□□□□ 0.56
UPF1-208ENST00000600012 SPATA31E1Q6ZUB1 1445 aa18.54■□□□□ 0.56
UPF1-208ENST00000600012 KNDC1Q76NI1 1749 aa18.54■□□□□ 0.56
UPF1-208ENST00000600012 ANKRD30BQ9BXX2 1392 aa18.54■□□□□ 0.56
UPF1-208ENST00000600012 ADGRF5Q8IZF2 1346 aa18.53■□□□□ 0.56
UPF1-208ENST00000600012 TECPR2O15040 1411 aa18.53■□□□□ 0.56
UPF1-208ENST00000600012 NPHP3Q7Z494 1330 aa18.52■□□□□ 0.56
UPF1-208ENST00000600012 RGL3Q3MIN7 710 aa18.51■□□□□ 0.55
UPF1-208ENST00000600012 LRPPRCP42704 1394 aaKnown RBP18.51■□□□□ 0.55
UPF1-208ENST00000600012 ESCO1Q5FWF5 840 aa18.5■□□□□ 0.55
UPF1-208ENST00000600012 MPHOSPH9Q99550 1183 aa18.5■□□□□ 0.55
UPF1-208ENST00000600012 PXDNQ92626 1479 aa18.5■□□□□ 0.55
UPF1-208ENST00000600012 MARF1Q9Y4F3 1742 aaKnown RBP18.49■□□□□ 0.55
UPF1-208ENST00000600012 MYOM2P54296 1465 aa18.49■□□□□ 0.55
UPF1-208ENST00000600012 PIK3C2GO75747 1445 aa18.49■□□□□ 0.55
UPF1-208ENST00000600012 ABCC11Q96J66 1382 aa18.48■□□□□ 0.55
UPF1-208ENST00000600012 STK26Q9P289 416 aa18.48■□□□□ 0.55
UPF1-208ENST00000600012 USP21Q9UK80 565 aa18.48■□□□□ 0.55
UPF1-208ENST00000600012 FMN2Q9NZ56 1722 aa18.47■□□□□ 0.55
UPF1-208ENST00000600012 FNBP4Q8N3X1 1017 aaPredicted RBP18.47■□□□□ 0.55
UPF1-208ENST00000600012 TRPC5Q9UL62 973 aaPredicted RBP18.47■□□□□ 0.55
UPF1-208ENST00000600012 WAPLQ7Z5K2 1190 aa18.46■□□□□ 0.55
UPF1-208ENST00000600012 ACIN1Q9UKV3 1341 aaKnown RBP18.46■□□□□ 0.55
UPF1-208ENST00000600012 KIF1AQ12756 1690 aa18.45■□□□□ 0.54
UPF1-208ENST00000600012 FOXO3O43524 673 aa18.45■□□□□ 0.54
UPF1-208ENST00000600012 ATRNO75882 1429 aa18.45■□□□□ 0.54
UPF1-208ENST00000600012 YTHDC2Q9H6S0 1430 aaKnown RBP18.45■□□□□ 0.54
UPF1-208ENST00000600012 TMEM132EQ6IEE7 984 aa18.44■□□□□ 0.54
UPF1-208ENST00000600012 ATAD2Q6PL18 1390 aa18.43■□□□□ 0.54
UPF1-208ENST00000600012 PLEKHH1Q9ULM0 1364 aa18.43■□□□□ 0.54
UPF1-208ENST00000600012 NUTM2FA1L443 756 aa18.42■□□□□ 0.54
UPF1-208ENST00000600012 XPCQ01831 940 aaPredicted RBP18.42■□□□□ 0.54
UPF1-208ENST00000600012 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.4■□□□□ 0.54
UPF1-208ENST00000600012 NRXN1Q9ULB1 1477 aa18.4■□□□□ 0.54
UPF1-208ENST00000600012 SIRT1Q96EB6 747 aa18.4■□□□□ 0.54
UPF1-208ENST00000600012 BCL9LQ86UU0 1499 aa18.39■□□□□ 0.54
UPF1-208ENST00000600012 C14orf93Q9H972 538 aaKnown RBP18.39■□□□□ 0.53
UPF1-208ENST00000600012 RGPD8O14715 1765 aaPredicted RBP18.39■□□□□ 0.53
UPF1-208ENST00000600012 CLSPNQ9HAW4 1339 aa18.38■□□□□ 0.53
UPF1-208ENST00000600012 SPATA31A3Q5VYP0 1347 aa18.37■□□□□ 0.53
UPF1-208ENST00000600012 USP32Q8NFA0 1604 aa18.36■□□□□ 0.53
UPF1-208ENST00000600012 CFAP70Q5T0N1 1121 aa18.34■□□□□ 0.53
UPF1-208ENST00000600012 KRT28Q7Z3Y7 464 aa18.34■□□□□ 0.53
UPF1-208ENST00000600012 GJD4Q96KN9 370 aaPredicted RBP18.34■□□□□ 0.53
UPF1-208ENST00000600012 SLIT2O94813 1529 aa18.33■□□□□ 0.53
UPF1-208ENST00000600012 DLC1Q96QB1 1528 aa18.33■□□□□ 0.53
UPF1-208ENST00000600012 TNS3Q68CZ2 1445 aa18.33■□□□□ 0.53
UPF1-208ENST00000600012 ZEB1P37275 1124 aaPredicted RBP18.33■□□□□ 0.52
UPF1-208ENST00000600012 PHF8Q9UPP1 1060 aa18.33■□□□□ 0.52
UPF1-208ENST00000600012 UNC5CLQ8IV45 518 aa18.32■□□□□ 0.52
UPF1-208ENST00000600012 PSME1Q06323 249 aa18.31■□□□□ 0.52
UPF1-208ENST00000600012 PRAM1Q96QH2 718 aa18.31■□□□□ 0.52
UPF1-208ENST00000600012 ADGRB2O60241 1585 aa18.3■□□□□ 0.52
UPF1-208ENST00000600012 GLI3P10071 1580 aa18.3■□□□□ 0.52
UPF1-208ENST00000600012 ABCA3Q99758 1704 aa18.3■□□□□ 0.52
UPF1-208ENST00000600012 RALGAPBQ86X10 1494 aa18.3■□□□□ 0.52
UPF1-208ENST00000600012 ANKARQ7Z5J8 1434 aa18.3■□□□□ 0.52
UPF1-208ENST00000600012 SBNO1A3KN83 1393 aa18.3■□□□□ 0.52
UPF1-208ENST00000600012 NWD2Q9ULI1 1742 aa18.29■□□□□ 0.52
UPF1-208ENST00000600012 HAP1P54257 671 aaPredicted RBP18.29■□□□□ 0.52
UPF1-208ENST00000600012 SAFB2Q14151 953 aaKnown RBP eCLIP18.29■□□□□ 0.52
UPF1-208ENST00000600012 CCDC125Q86Z20 511 aa18.29■□□□□ 0.52
UPF1-208ENST00000600012 SIN3AQ96ST3 1273 aa18.29■□□□□ 0.52
UPF1-208ENST00000600012 PLCH1Q4KWH8 1693 aa18.28■□□□□ 0.52
UPF1-208ENST00000600012 POGKQ9P215 609 aa18.28■□□□□ 0.52
UPF1-208ENST00000600012 ADGRB1O14514 1584 aa18.28■□□□□ 0.52
UPF1-208ENST00000600012 ARHGEF10O15013 1369 aa18.28■□□□□ 0.52
UPF1-208ENST00000600012 EP400Q96L91 3159 aa18.26■□□□□ 0.51
UPF1-208ENST00000600012 BRWD3Q6RI45 1802 aa18.26■□□□□ 0.51
UPF1-208ENST00000600012 NEUROD1Q13562 356 aa18.25■□□□□ 0.51
UPF1-208ENST00000600012 TRPM3Q9HCF6 1732 aaPredicted RBP18.24■□□□□ 0.51
UPF1-208ENST00000600012 CABLES1Q8TDN4 633 aa18.24■□□□□ 0.51
UPF1-208ENST00000600012 ZRANB1Q9UGI0 708 aa18.24■□□□□ 0.51
UPF1-208ENST00000600012 EIF3AQ14152 1382 aaKnown RBP18.24■□□□□ 0.51
UPF1-208ENST00000600012 VPS72Q15906 364 aa18.23■□□□□ 0.51
UPF1-208ENST00000600012 LMOD2Q6P5Q4 547 aa18.23■□□□□ 0.51
UPF1-208ENST00000600012 PMFBP1Q8TBY8 1022 aa18.22■□□□□ 0.51
UPF1-208ENST00000600012 BLMP54132 1417 aaPredicted RBP18.22■□□□□ 0.51
UPF1-208ENST00000600012 STAC3Q96MF2 364 aa18.21■□□□□ 0.51
UPF1-208ENST00000600012 TRAK1Q9UPV9 953 aa18.21■□□□□ 0.51
UPF1-208ENST00000600012 TULP4Q9NRJ4 1543 aa18.21■□□□□ 0.51
UPF1-208ENST00000600012 ALS2Q96Q42 1657 aa18.21■□□□□ 0.51
UPF1-208ENST00000600012 PLEKHG5O94827 1062 aa18.2■□□□□ 0.5
UPF1-208ENST00000600012 GPRASP1Q5JY77 1395 aa18.19■□□□□ 0.5
UPF1-208ENST00000600012 NRAPQ86VF7 1730 aa18.19■□□□□ 0.5
UPF1-208ENST00000600012 SEPT12Q8IYM1 358 aa18.19■□□□□ 0.5
UPF1-208ENST00000600012 DCAF11Q8TEB1 546 aa18.19■□□□□ 0.5
UPF1-208ENST00000600012 HIRIP3Q9BW71 556 aaPredicted RBP18.19■□□□□ 0.5
UPF1-208ENST00000600012 KDM2AQ9Y2K7 1162 aa18.19■□□□□ 0.5
UPF1-208ENST00000600012 CCDC9Q9Y3X0 531 aaKnown RBP18.19■□□□□ 0.5
UPF1-208ENST00000600012 MINK1Q8N4C8 1332 aaPredicted RBP18.19■□□□□ 0.5
UPF1-208ENST00000600012 ITSN1Q15811 1721 aa18.18■□□□□ 0.5
UPF1-208ENST00000600012 ARHGEF28Q8N1W1 1705 aaKnown RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms