RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 HFM1A2PYH4 1435 aa15.49■□□□□ 0.07
TRIM28-210ENST00000597618 NPHP3Q7Z494 1330 aa15.48■□□□□ 0.07
TRIM28-210ENST00000597618 VGFO15240 615 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-210ENST00000597618 BCL9LQ86UU0 1499 aa15.47■□□□□ 0.07
TRIM28-210ENST00000597618 CDC42BPGQ6DT37 1551 aa15.45■□□□□ 0.06
TRIM28-210ENST00000597618 GJD4Q96KN9 370 aaPredicted RBP15.45■□□□□ 0.06
TRIM28-210ENST00000597618 PXDNQ92626 1479 aa15.45■□□□□ 0.06
TRIM28-210ENST00000597618 ESCO1Q5FWF5 840 aa15.44■□□□□ 0.06
TRIM28-210ENST00000597618 KIF1BO60333 1816 aa15.44■□□□□ 0.06
TRIM28-210ENST00000597618 RPGRIP1LQ68CZ1 1315 aa15.43■□□□□ 0.06
TRIM28-210ENST00000597618 BLMP54132 1417 aaPredicted RBP15.43■□□□□ 0.06
TRIM28-210ENST00000597618 LRPPRCP42704 1394 aaKnown RBP15.43■□□□□ 0.06
TRIM28-210ENST00000597618 RALGAPBQ86X10 1494 aa15.4■□□□□ 0.06
TRIM28-210ENST00000597618 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.4■□□□□ 0.06
TRIM28-210ENST00000597618 MARF1Q9Y4F3 1742 aaKnown RBP15.4■□□□□ 0.06
TRIM28-210ENST00000597618 FOXO3O43524 673 aa15.4■□□□□ 0.06
TRIM28-210ENST00000597618 UNC5CLQ8IV45 518 aa15.4■□□□□ 0.06
TRIM28-210ENST00000597618 XPCQ01831 940 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-210ENST00000597618 SLIT2O94813 1529 aa15.38■□□□□ 0.05
TRIM28-210ENST00000597618 NAIPQ13075 1403 aa15.38■□□□□ 0.05
TRIM28-210ENST00000597618 GLI3P10071 1580 aa15.37■□□□□ 0.05
TRIM28-210ENST00000597618 SF3B2Q13435 895 aaKnown RBP15.37■□□□□ 0.05
TRIM28-210ENST00000597618 CCDC144AA2RUR9 1427 aa15.35■□□□□ 0.05
TRIM28-210ENST00000597618 TECPR2O15040 1411 aa15.35■□□□□ 0.05
TRIM28-210ENST00000597618 PPLO60437 1756 aa15.35■□□□□ 0.05
TRIM28-210ENST00000597618 SPATA31A3Q5VYP0 1347 aa15.35■□□□□ 0.05
TRIM28-210ENST00000597618 DEFB132Q7Z7B7 95 aa15.34■□□□□ 0.05
TRIM28-210ENST00000597618 LRP5O75197 1615 aa15.34■□□□□ 0.05
TRIM28-210ENST00000597618 USP32Q8NFA0 1604 aa15.34■□□□□ 0.05
TRIM28-210ENST00000597618 KIF1AQ12756 1690 aa15.33■□□□□ 0.04
TRIM28-210ENST00000597618 NUTM2FA1L443 756 aa15.33■□□□□ 0.04
TRIM28-210ENST00000597618 SEPT12Q8IYM1 358 aa15.32■□□□□ 0.04
TRIM28-210ENST00000597618 RRBP1Q9P2E9 1410 aaKnown RBP15.32■□□□□ 0.04
TRIM28-210ENST00000597618 HAP1P54257 671 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-210ENST00000597618 VPS72Q15906 364 aa15.31■□□□□ 0.04
TRIM28-210ENST00000597618 WAPLQ7Z5K2 1190 aa15.31■□□□□ 0.04
TRIM28-210ENST00000597618 STK26Q9P289 416 aa15.31■□□□□ 0.04
TRIM28-210ENST00000597618 TNS3Q68CZ2 1445 aa15.3■□□□□ 0.04
TRIM28-210ENST00000597618 ABCC11Q96J66 1382 aa15.3■□□□□ 0.04
TRIM28-210ENST00000597618 SLC4A1APQ9BWU0 796 aaKnown RBP15.3■□□□□ 0.04
TRIM28-210ENST00000597618 FMN2Q9NZ56 1722 aa15.29■□□□□ 0.04
TRIM28-210ENST00000597618 ADGRF5Q8IZF2 1346 aa15.29■□□□□ 0.04
TRIM28-210ENST00000597618 KRT28Q7Z3Y7 464 aa15.29■□□□□ 0.04
TRIM28-210ENST00000597618 BRWD3Q6RI45 1802 aa15.29■□□□□ 0.04
TRIM28-210ENST00000597618 PLEKHH1Q9ULM0 1364 aa15.28■□□□□ 0.04
TRIM28-210ENST00000597618 ONECUT3O60422 494 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-210ENST00000597618 KRT27Q7Z3Y8 459 aa15.28■□□□□ 0.04
TRIM28-210ENST00000597618 CCDC9Q9Y3X0 531 aaKnown RBP15.28■□□□□ 0.04
TRIM28-210ENST00000597618 KNDC1Q76NI1 1749 aa15.28■□□□□ 0.04
TRIM28-210ENST00000597618 ANKRD30BQ9BXX2 1392 aa15.27■□□□□ 0.04
TRIM28-210ENST00000597618 PSME1Q06323 249 aa15.27■□□□□ 0.04
TRIM28-210ENST00000597618 PPARGC1BQ86YN6 1023 aaKnown RBP15.27■□□□□ 0.04
TRIM28-210ENST00000597618 NWD2Q9ULI1 1742 aa15.26■□□□□ 0.03
TRIM28-210ENST00000597618 BAG6P46379 1132 aa15.26■□□□□ 0.03
TRIM28-210ENST00000597618 PLCH1Q4KWH8 1693 aa15.25■□□□□ 0.03
TRIM28-210ENST00000597618 SBNO1A3KN83 1393 aa15.25■□□□□ 0.03
TRIM28-210ENST00000597618 ARHGEF10O15013 1369 aa15.25■□□□□ 0.03
TRIM28-210ENST00000597618 PHF8Q9UPP1 1060 aa15.25■□□□□ 0.03
TRIM28-210ENST00000597618 PIK3C2GO75747 1445 aa15.25■□□□□ 0.03
TRIM28-210ENST00000597618 YTHDC2Q9H6S0 1430 aaKnown RBP15.25■□□□□ 0.03
TRIM28-210ENST00000597618 PSDA5PKW4 1024 aaPredicted RBP15.24■□□□□ 0.03
TRIM28-210ENST00000597618 HRCP23327 699 aa15.24■□□□□ 0.03
TRIM28-210ENST00000597618 TMEM132EQ6IEE7 984 aa15.24■□□□□ 0.03
TRIM28-210ENST00000597618 CABLES1Q8TDN4 633 aa15.24■□□□□ 0.03
TRIM28-210ENST00000597618 SPATA31E1Q6ZUB1 1445 aa15.24■□□□□ 0.03
TRIM28-210ENST00000597618 NRXN1Q9ULB1 1477 aa15.23■□□□□ 0.03
TRIM28-210ENST00000597618 A0A0G2JS52 829 aa15.23■□□□□ 0.03
TRIM28-210ENST00000597618 MYT1Q01538 1121 aa15.23■□□□□ 0.03
TRIM28-210ENST00000597618 SIRT1Q96EB6 747 aa15.23■□□□□ 0.03
TRIM28-210ENST00000597618 RGL3Q3MIN7 710 aa15.22■□□□□ 0.03
TRIM28-210ENST00000597618 ABCA3Q99758 1704 aa15.21■□□□□ 0.03
TRIM28-210ENST00000597618 IFT172Q9UG01 1749 aa15.21■□□□□ 0.03
TRIM28-210ENST00000597618 PLEKHG5O94827 1062 aa15.21■□□□□ 0.03
TRIM28-210ENST00000597618 LMOD2Q6P5Q4 547 aa15.21■□□□□ 0.03
TRIM28-210ENST00000597618 FAM83GA6ND36 823 aa15.2■□□□□ 0.02
TRIM28-210ENST00000597618 FAM98CQ17RN3 349 aaKnown RBP15.19■□□□□ 0.02
TRIM28-210ENST00000597618 DISP2A7MBM2 1401 aa15.17■□□□□ 0.02
TRIM28-210ENST00000597618 ANKARQ7Z5J8 1434 aa15.17■□□□□ 0.02
TRIM28-210ENST00000597618 NRAPQ86VF7 1730 aa15.17■□□□□ 0.02
TRIM28-210ENST00000597618 EN1Q05925 392 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-210ENST00000597618 BTG4Q9NY30 223 aa15.17■□□□□ 0.02
TRIM28-210ENST00000597618 RGPD1P0DJD0 1748 aa15.17■□□□□ 0.02
TRIM28-210ENST00000597618 DHX57Q6P158 1386 aaKnown RBP15.16■□□□□ 0.02
TRIM28-210ENST00000597618 C14orf93Q9H972 538 aaKnown RBP15.16■□□□□ 0.02
TRIM28-210ENST00000597618 R3HDM1Q15032 1099 aaKnown RBP15.15■□□□□ 0.02
TRIM28-210ENST00000597618 PRAM1Q96QH2 718 aa15.15■□□□□ 0.02
TRIM28-210ENST00000597618 RGPD8O14715 1765 aaPredicted RBP15.15■□□□□ 0.02
TRIM28-210ENST00000597618 COL14A1Q05707 1796 aaKnown RBP15.14■□□□□ 0.01
TRIM28-210ENST00000597618 SPATA31A5Q5VU36 1347 aa15.14■□□□□ 0.01
TRIM28-210ENST00000597618 SPATA31A7Q8IWB4 1347 aa15.14■□□□□ 0.01
TRIM28-210ENST00000597618 ADGRB2O60241 1585 aa15.13■□□□□ 0.01
TRIM28-210ENST00000597618 SAFB2Q14151 953 aaKnown RBP eCLIP15.13■□□□□ 0.01
TRIM28-210ENST00000597618 PMFBP1Q8TBY8 1022 aa15.13■□□□□ 0.01
TRIM28-210ENST00000597618 GPRASP1Q5JY77 1395 aa15.12■□□□□ 0.01
TRIM28-210ENST00000597618 MPHOSPH9Q99550 1183 aa15.12■□□□□ 0.01
TRIM28-210ENST00000597618 THSD7AQ9UPZ6 1657 aa15.12■□□□□ 0.01
TRIM28-210ENST00000597618 DLC1Q96QB1 1528 aa15.12■□□□□ 0.01
TRIM28-210ENST00000597618 TRPM3Q9HCF6 1732 aaPredicted RBP15.12■□□□□ 0.01
TRIM28-210ENST00000597618 EIF3AQ14152 1382 aaKnown RBP15.11■□□□□ 0.01
TRIM28-210ENST00000597618 CFAP70Q5T0N1 1121 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 881.2 ms