RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 CLTCL1P53675 1640 aa24.01■■□□□ 1.43
LIG1-214ENST00000597146 NUP155O75694 1391 aa24■■□□□ 1.43
LIG1-214ENST00000597146 BLMP54132 1417 aaPredicted RBP23.99■■□□□ 1.43
LIG1-214ENST00000597146 ROBO2Q9HCK4 1378 aa23.97■■□□□ 1.43
LIG1-214ENST00000597146 PXDNQ92626 1479 aa23.96■■□□□ 1.43
LIG1-214ENST00000597146 DEFB132Q7Z7B7 95 aa23.96■■□□□ 1.43
LIG1-214ENST00000597146 KIF1BO60333 1816 aa23.96■■□□□ 1.43
LIG1-214ENST00000597146 GJD4Q96KN9 370 aaPredicted RBP23.95■■□□□ 1.42
LIG1-214ENST00000597146 RALGAPBQ86X10 1494 aa23.94■■□□□ 1.42
LIG1-214ENST00000597146 ROCK1Q13464 1354 aa23.92■■□□□ 1.42
LIG1-214ENST00000597146 CDC42BPGQ6DT37 1551 aa23.91■■□□□ 1.42
LIG1-214ENST00000597146 XPCQ01831 940 aaPredicted RBP23.9■■□□□ 1.42
LIG1-214ENST00000597146 PRAG1Q86YV5 1406 aa23.88■■□□□ 1.41
LIG1-214ENST00000597146 SLIT2O94813 1529 aa23.88■■□□□ 1.41
LIG1-214ENST00000597146 NPHP3Q7Z494 1330 aa23.87■■□□□ 1.41
LIG1-214ENST00000597146 USP32Q8NFA0 1604 aa23.87■■□□□ 1.41
LIG1-214ENST00000597146 ESCO1Q5FWF5 840 aa23.85■■□□□ 1.41
LIG1-214ENST00000597146 PLCH1Q4KWH8 1693 aa23.85■■□□□ 1.41
LIG1-214ENST00000597146 HFM1A2PYH4 1435 aa23.84■■□□□ 1.41
LIG1-214ENST00000597146 UNC5CLQ8IV45 518 aa23.83■■□□□ 1.41
LIG1-214ENST00000597146 PSDA5PKW4 1024 aaPredicted RBP23.82■■□□□ 1.4
LIG1-214ENST00000597146 FOXO3O43524 673 aa23.82■■□□□ 1.4
LIG1-214ENST00000597146 SF3B2Q13435 895 aaKnown RBP23.82■■□□□ 1.4
LIG1-214ENST00000597146 PPLO60437 1756 aa23.82■■□□□ 1.4
LIG1-214ENST00000597146 ABCA3Q99758 1704 aa23.79■■□□□ 1.4
LIG1-214ENST00000597146 SEPT12Q8IYM1 358 aa23.78■■□□□ 1.4
LIG1-214ENST00000597146 NWD2Q9ULI1 1742 aa23.78■■□□□ 1.4
LIG1-214ENST00000597146 ITGAEP38570 1179 aa23.77■■□□□ 1.4
LIG1-214ENST00000597146 KIF1AQ12756 1690 aa23.76■■□□□ 1.39
LIG1-214ENST00000597146 FMN2Q9NZ56 1722 aa23.76■■□□□ 1.39
LIG1-214ENST00000597146 NAIPQ13075 1403 aa23.76■■□□□ 1.39
LIG1-214ENST00000597146 NUTM2FA1L443 756 aa23.75■■□□□ 1.39
LIG1-214ENST00000597146 HRCP23327 699 aa23.75■■□□□ 1.39
LIG1-214ENST00000597146 LRPPRCP42704 1394 aaKnown RBP23.73■■□□□ 1.39
LIG1-214ENST00000597146 RGPD8O14715 1765 aaPredicted RBP23.73■■□□□ 1.39
LIG1-214ENST00000597146 VGFO15240 615 aaPredicted RBP23.72■■□□□ 1.39
LIG1-214ENST00000597146 RGPD1P0DJD0 1748 aa23.72■■□□□ 1.39
LIG1-214ENST00000597146 SPATA31A3Q5VYP0 1347 aa23.71■■□□□ 1.39
LIG1-214ENST00000597146 KRT27Q7Z3Y8 459 aa23.71■■□□□ 1.39
LIG1-214ENST00000597146 NRAPQ86VF7 1730 aa23.7■■□□□ 1.38
LIG1-214ENST00000597146 VPS72Q15906 364 aa23.69■■□□□ 1.38
LIG1-214ENST00000597146 KNDC1Q76NI1 1749 aa23.69■■□□□ 1.38
LIG1-214ENST00000597146 IFT172Q9UG01 1749 aa23.69■■□□□ 1.38
LIG1-214ENST00000597146 CCDC144AA2RUR9 1427 aa23.68■■□□□ 1.38
LIG1-214ENST00000597146 TNS1Q9HBL0 1735 aaKnown RBP23.68■■□□□ 1.38
LIG1-214ENST00000597146 CCDC9Q9Y3X0 531 aaKnown RBP23.68■■□□□ 1.38
LIG1-214ENST00000597146 PLEKHG5O94827 1062 aa23.67■■□□□ 1.38
LIG1-214ENST00000597146 BAG6P46379 1132 aa23.67■■□□□ 1.38
LIG1-214ENST00000597146 CABLES1Q8TDN4 633 aa23.65■■□□□ 1.38
LIG1-214ENST00000597146 TNS3Q68CZ2 1445 aa23.65■■□□□ 1.38
LIG1-214ENST00000597146 ONECUT3O60422 494 aaPredicted RBP23.64■■□□□ 1.37
LIG1-214ENST00000597146 HAP1P54257 671 aaPredicted RBP23.64■■□□□ 1.37
LIG1-214ENST00000597146 WAPLQ7Z5K2 1190 aa23.64■■□□□ 1.37
LIG1-214ENST00000597146 PLEKHH1Q9ULM0 1364 aa23.64■■□□□ 1.37
LIG1-214ENST00000597146 A0A0G2JS52 829 aa23.63■■□□□ 1.37
LIG1-214ENST00000597146 TECPR2O15040 1411 aa23.63■■□□□ 1.37
LIG1-214ENST00000597146 MYT1Q01538 1121 aa23.63■■□□□ 1.37
LIG1-214ENST00000597146 R3HDM1Q15032 1099 aaKnown RBP23.62■■□□□ 1.37
LIG1-214ENST00000597146 RPGRIP1LQ68CZ1 1315 aa23.61■■□□□ 1.37
LIG1-214ENST00000597146 EN1Q05925 392 aaPredicted RBP23.61■■□□□ 1.37
LIG1-214ENST00000597146 KRT28Q7Z3Y7 464 aa23.61■■□□□ 1.37
LIG1-214ENST00000597146 STK26Q9P289 416 aa23.61■■□□□ 1.37
LIG1-214ENST00000597146 FAM98CQ17RN3 349 aaKnown RBP23.57■■□□□ 1.36
LIG1-214ENST00000597146 FAM182BQ5T319 152 aa23.57■■□□□ 1.36
LIG1-214ENST00000597146 RRBP1Q9P2E9 1410 aaKnown RBP23.56■■□□□ 1.36
LIG1-214ENST00000597146 ADGRF5Q8IZF2 1346 aa23.56■■□□□ 1.36
LIG1-214ENST00000597146 THSD7AQ9UPZ6 1657 aa23.55■■□□□ 1.36
LIG1-214ENST00000597146 DISP2A7MBM2 1401 aa23.54■■□□□ 1.36
LIG1-214ENST00000597146 COL14A1Q05707 1796 aaKnown RBP23.53■■□□□ 1.36
LIG1-214ENST00000597146 LMOD2Q6P5Q4 547 aa23.53■■□□□ 1.36
LIG1-214ENST00000597146 ADGRB2O60241 1585 aa23.52■■□□□ 1.36
LIG1-214ENST00000597146 NRXN1Q9ULB1 1477 aa23.52■■□□□ 1.36
LIG1-214ENST00000597146 FAM83GA6ND36 823 aa23.52■■□□□ 1.36
LIG1-214ENST00000597146 TRPM3Q9HCF6 1732 aaPredicted RBP23.52■■□□□ 1.36
LIG1-214ENST00000597146 YY1P25490 414 aa23.51■■□□□ 1.35
LIG1-214ENST00000597146 TMEM132EQ6IEE7 984 aa23.51■■□□□ 1.35
LIG1-214ENST00000597146 PHF8Q9UPP1 1060 aa23.51■■□□□ 1.35
LIG1-214ENST00000597146 SBNO1A3KN83 1393 aa23.51■■□□□ 1.35
LIG1-214ENST00000597146 ABCC11Q96J66 1382 aa23.51■■□□□ 1.35
LIG1-214ENST00000597146 ARHGEF10O15013 1369 aa23.5■■□□□ 1.35
LIG1-214ENST00000597146 RREB1Q92766 1687 aa23.49■■□□□ 1.35
LIG1-214ENST00000597146 PSME1Q06323 249 aa23.49■■□□□ 1.35
LIG1-214ENST00000597146 EZH2Q15910 746 aaKnown RBP23.49■■□□□ 1.35
LIG1-214ENST00000597146 ALS2Q96Q42 1657 aa23.48■■□□□ 1.35
LIG1-214ENST00000597146 NUP188Q5SRE5 1749 aa23.48■■□□□ 1.35
LIG1-214ENST00000597146 CRYBG1Q9Y4K1 1723 aa23.48■■□□□ 1.35
LIG1-214ENST00000597146 BTG4Q9NY30 223 aa23.48■■□□□ 1.35
LIG1-214ENST00000597146 YTHDC2Q9H6S0 1430 aaKnown RBP23.47■■□□□ 1.35
LIG1-214ENST00000597146 PIK3C2GO75747 1445 aa23.44■■□□□ 1.34
LIG1-214ENST00000597146 PPARGC1BQ86YN6 1023 aaKnown RBP23.43■■□□□ 1.34
LIG1-214ENST00000597146 SPATA31A5Q5VU36 1347 aa23.42■■□□□ 1.34
LIG1-214ENST00000597146 SPATA31A7Q8IWB4 1347 aa23.42■■□□□ 1.34
LIG1-214ENST00000597146 SPATA31E1Q6ZUB1 1445 aa23.42■■□□□ 1.34
LIG1-214ENST00000597146 CAMKK2Q96RR4 588 aa23.41■■□□□ 1.34
LIG1-214ENST00000597146 RGL3Q3MIN7 710 aa23.4■■□□□ 1.34
LIG1-214ENST00000597146 SLC4A1APQ9BWU0 796 aaKnown RBP23.4■■□□□ 1.34
LIG1-214ENST00000597146 CAMTA1Q9Y6Y1 1673 aa23.4■■□□□ 1.34
LIG1-214ENST00000597146 TRIM37O94972 964 aa23.39■■□□□ 1.33
LIG1-214ENST00000597146 PMFBP1Q8TBY8 1022 aa23.39■■□□□ 1.33
LIG1-214ENST00000597146 ANKRD30BQ9BXX2 1392 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms