RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 PLEKHH1Q9ULM0 1364 aa15.91■□□□□ 0.14
LIG1-211ENST00000596457 POGKQ9P215 609 aa15.91■□□□□ 0.14
LIG1-211ENST00000596457 PRAG1Q86YV5 1406 aa15.91■□□□□ 0.14
LIG1-211ENST00000596457 NBPF1Q3BBV0 1214 aa15.9■□□□□ 0.14
LIG1-211ENST00000596457 UPF1Q92900 1129 aaKnown RBP eCLIP15.9■□□□□ 0.14
LIG1-211ENST00000596457 DCCP43146 1447 aa15.9■□□□□ 0.14
LIG1-211ENST00000596457 ADGRL3Q9HAR2 1447 aa15.9■□□□□ 0.14
LIG1-211ENST00000596457 KIAA1210Q9ULL0 1709 aa15.89■□□□□ 0.13
LIG1-211ENST00000596457 ADGRB1O14514 1584 aa15.89■□□□□ 0.13
LIG1-211ENST00000596457 PRAM1Q96QH2 718 aa15.89■□□□□ 0.13
LIG1-211ENST00000596457 TECPR2O15040 1411 aa15.88■□□□□ 0.13
LIG1-211ENST00000596457 NUTM2FA1L443 756 aa15.87■□□□□ 0.13
LIG1-211ENST00000596457 PHLPP1O60346 1717 aa15.86■□□□□ 0.13
LIG1-211ENST00000596457 NBPF8Q3BBV2 869 aa15.86■□□□□ 0.13
LIG1-211ENST00000596457 SIRT1Q96EB6 747 aa15.85■□□□□ 0.13
LIG1-211ENST00000596457 TRPM1Q7Z4N2 1603 aa15.85■□□□□ 0.13
LIG1-211ENST00000596457 DLC1Q96QB1 1528 aa15.84■□□□□ 0.13
LIG1-211ENST00000596457 HIRIP3Q9BW71 556 aaPredicted RBP15.84■□□□□ 0.13
LIG1-211ENST00000596457 ARHGEF28Q8N1W1 1705 aaKnown RBP15.84■□□□□ 0.13
LIG1-211ENST00000596457 MINK1Q8N4C8 1332 aaPredicted RBP15.84■□□□□ 0.13
LIG1-211ENST00000596457 JCADQ9P266 1359 aa15.84■□□□□ 0.13
LIG1-211ENST00000596457 MST1RQ04912 1400 aa15.84■□□□□ 0.13
LIG1-211ENST00000596457 ROCK2O75116 1388 aaKnown RBP15.82■□□□□ 0.12
LIG1-211ENST00000596457 AHDC1Q5TGY3 1603 aaPredicted RBP15.81■□□□□ 0.12
LIG1-211ENST00000596457 BRINP3Q76B58 766 aa15.81■□□□□ 0.12
LIG1-211ENST00000596457 C1orf167Q5SNV9 1468 aa15.8■□□□□ 0.12
LIG1-211ENST00000596457 CLSPNQ9HAW4 1339 aa15.8■□□□□ 0.12
LIG1-211ENST00000596457 ORAI2Q96SN7 254 aa15.8■□□□□ 0.12
LIG1-211ENST00000596457 RGPD8O14715 1765 aaPredicted RBP15.8■□□□□ 0.12
LIG1-211ENST00000596457 CDC42BPGQ6DT37 1551 aa15.79■□□□□ 0.12
LIG1-211ENST00000596457 SPATA31A6Q5VVP1 1343 aa15.79■□□□□ 0.12
LIG1-211ENST00000596457 ESCO1Q5FWF5 840 aa15.79■□□□□ 0.12
LIG1-211ENST00000596457 DDX17Q92841 729 aaKnown RBP15.79■□□□□ 0.12
LIG1-211ENST00000596457 FMN2Q9NZ56 1722 aa15.79■□□□□ 0.12
LIG1-211ENST00000596457 COL16A1Q07092 1604 aaPredicted RBP15.79■□□□□ 0.12
LIG1-211ENST00000596457 CARD11Q9BXL7 1154 aa15.77■□□□□ 0.12
LIG1-211ENST00000596457 CENPJQ9HC77 1338 aaPredicted RBP15.75■□□□□ 0.11
LIG1-211ENST00000596457 LRRC59Q96AG4 307 aaKnown RBP15.75■□□□□ 0.11
LIG1-211ENST00000596457 QRICH2Q9H0J4 1663 aa15.75■□□□□ 0.11
LIG1-211ENST00000596457 SHPRHQ149N8 1683 aa15.74■□□□□ 0.11
LIG1-211ENST00000596457 WASLO00401 505 aaPredicted RBP15.74■□□□□ 0.11
LIG1-211ENST00000596457 NHSL1Q5SYE7 1610 aa15.73■□□□□ 0.11
LIG1-211ENST00000596457 ADGRB2O60241 1585 aa15.73■□□□□ 0.11
LIG1-211ENST00000596457 RALGAPBQ86X10 1494 aa15.72■□□□□ 0.11
LIG1-211ENST00000596457 XPCQ01831 940 aaPredicted RBP15.72■□□□□ 0.11
LIG1-211ENST00000596457 CDK19Q9BWU1 502 aa15.72■□□□□ 0.11
LIG1-211ENST00000596457 TIMELESSQ9UNS1 1208 aa15.72■□□□□ 0.11
LIG1-211ENST00000596457 FOXO3O43524 673 aa15.71■□□□□ 0.11
LIG1-211ENST00000596457 PMFBP1Q8TBY8 1022 aa15.71■□□□□ 0.11
LIG1-211ENST00000596457 EIF3AQ14152 1382 aaKnown RBP15.71■□□□□ 0.11
LIG1-211ENST00000596457 USP32Q8NFA0 1604 aa15.71■□□□□ 0.11
LIG1-211ENST00000596457 SRPK2P78362 688 aaKnown RBP15.7■□□□□ 0.1
LIG1-211ENST00000596457 PHF8Q9UPP1 1060 aa15.7■□□□□ 0.1
LIG1-211ENST00000596457 GPRASP1Q5JY77 1395 aa15.69■□□□□ 0.1
LIG1-211ENST00000596457 TULP4Q9NRJ4 1543 aa15.68■□□□□ 0.1
LIG1-211ENST00000596457 KIF1AQ12756 1690 aa15.68■□□□□ 0.1
LIG1-211ENST00000596457 MEX3CQ5U5Q3 659 aaKnown RBP15.68■□□□□ 0.1
LIG1-211ENST00000596457 NUDT16Q96DE0 195 aaKnown RBP15.68■□□□□ 0.1
LIG1-211ENST00000596457 CABP2Q9NPB3 220 aa15.68■□□□□ 0.1
LIG1-211ENST00000596457 NPHP3Q7Z494 1330 aa15.68■□□□□ 0.1
LIG1-211ENST00000596457 PRR36Q9H6K5 1346 aa15.68■□□□□ 0.1
LIG1-211ENST00000596457 ZNF772Q68DY9 489 aaPredicted RBP15.67■□□□□ 0.1
LIG1-211ENST00000596457 ITSN1Q15811 1721 aa15.66■□□□□ 0.1
LIG1-211ENST00000596457 NUTM2BA6NNL0 878 aaPredicted RBP15.66■□□□□ 0.1
LIG1-211ENST00000596457 NUTM2EB1AL46 878 aaPredicted RBP15.66■□□□□ 0.1
LIG1-211ENST00000596457 PSME1Q06323 249 aa15.66■□□□□ 0.1
LIG1-211ENST00000596457 KRT28Q7Z3Y7 464 aa15.66■□□□□ 0.1
LIG1-211ENST00000596457 NUTM2AQ8IVF1 878 aaPredicted RBP15.66■□□□□ 0.1
LIG1-211ENST00000596457 ANKARQ7Z5J8 1434 aa15.66■□□□□ 0.1
LIG1-211ENST00000596457 SOS2Q07890 1332 aaPredicted RBP15.66■□□□□ 0.1
LIG1-211ENST00000596457 PLEKHG5O94827 1062 aa15.65■□□□□ 0.1
LIG1-211ENST00000596457 NGDNQ8NEJ9 315 aaKnown RBP15.65■□□□□ 0.1
LIG1-211ENST00000596457 EVC2Q86UK5 1308 aa15.65■□□□□ 0.1
LIG1-211ENST00000596457 ST20-MTHFSA0A0A6YYL1 179 aa15.63■□□□□ 0.09
LIG1-211ENST00000596457 LMOD2Q6P5Q4 547 aa15.63■□□□□ 0.09
LIG1-211ENST00000596457 LRP6O75581 1613 aa15.63■□□□□ 0.09
LIG1-211ENST00000596457 PNPLA6Q8IY17 1366 aa15.62■□□□□ 0.09
LIG1-211ENST00000596457 ATP7BP35670 1465 aa15.62■□□□□ 0.09
LIG1-211ENST00000596457 PXDNQ92626 1479 aa15.62■□□□□ 0.09
LIG1-211ENST00000596457 CCDC61Q9Y6R9 512 aa15.61■□□□□ 0.09
LIG1-211ENST00000596457 PAK3O75914 559 aaPredicted RBP15.6■□□□□ 0.09
LIG1-211ENST00000596457 TOPAZ1Q8N9V7 1692 aa15.6■□□□□ 0.09
LIG1-211ENST00000596457 USP47Q96K76 1375 aa15.6■□□□□ 0.09
LIG1-211ENST00000596457 PPIP5K1Q6PFW1 1433 aa15.6■□□□□ 0.09
LIG1-211ENST00000596457 CABP1Q9NZU7 370 aa15.59■□□□□ 0.09
LIG1-211ENST00000596457 ACEP12821 1306 aa15.58■□□□□ 0.08
LIG1-211ENST00000596457 SPATA31A3Q5VYP0 1347 aa15.57■□□□□ 0.08
LIG1-211ENST00000596457 PLEKHG3A1L390 1219 aa15.56■□□□□ 0.08
LIG1-211ENST00000596457 ADAMTS2O95450 1211 aa15.56■□□□□ 0.08
LIG1-211ENST00000596457 RXRBP28702 533 aa15.56■□□□□ 0.08
LIG1-211ENST00000596457 TMC1Q8TDI8 760 aa15.56■□□□□ 0.08
LIG1-211ENST00000596457 COL22A1Q8NFW1 1626 aaPredicted RBP15.55■□□□□ 0.08
LIG1-211ENST00000596457 AFF2P51816 1311 aa15.55■□□□□ 0.08
LIG1-211ENST00000596457 HAP1P54257 671 aaPredicted RBP15.55■□□□□ 0.08
LIG1-211ENST00000596457 ZRANB1Q9UGI0 708 aa15.55■□□□□ 0.08
LIG1-211ENST00000596457 TRPM3Q9HCF6 1732 aaPredicted RBP15.54■□□□□ 0.08
LIG1-211ENST00000596457 TNS3Q68CZ2 1445 aa15.54■□□□□ 0.08
LIG1-211ENST00000596457 SBNO2Q9Y2G9 1366 aa15.54■□□□□ 0.08
LIG1-211ENST00000596457 TESK2Q96S53 571 aa15.54■□□□□ 0.08
LIG1-211ENST00000596457 SBNO1A3KN83 1393 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms