RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 CLSPNQ9HAW4 1339 aa24.76■■□□□ 1.55
SHKBP1-212ENST00000596163 ROBO1Q9Y6N7 1651 aa24.75■■□□□ 1.55
SHKBP1-212ENST00000596163 SAFB2Q14151 953 aaKnown RBP eCLIP24.74■■□□□ 1.55
SHKBP1-212ENST00000596163 NALCNQ8IZF0 1738 aa24.74■■□□□ 1.55
SHKBP1-212ENST00000596163 NBPF1Q3BBV0 1214 aa24.73■■□□□ 1.55
SHKBP1-212ENST00000596163 KIAA1210Q9ULL0 1709 aa24.72■■□□□ 1.55
SHKBP1-212ENST00000596163 C1orf167Q5SNV9 1468 aa24.71■■□□□ 1.55
SHKBP1-212ENST00000596163 CDC42BPGQ6DT37 1551 aa24.7■■□□□ 1.54
SHKBP1-212ENST00000596163 ESCO1Q5FWF5 840 aa24.67■■□□□ 1.54
SHKBP1-212ENST00000596163 CCER1Q8TC90 406 aaPredicted RBP24.67■■□□□ 1.54
SHKBP1-212ENST00000596163 TIMELESSQ9UNS1 1208 aa24.67■■□□□ 1.54
SHKBP1-212ENST00000596163 ORAI2Q96SN7 254 aa24.66■■□□□ 1.54
SHKBP1-212ENST00000596163 DISP3Q9P2K9 1392 aa24.66■■□□□ 1.54
SHKBP1-212ENST00000596163 ROCK2O75116 1388 aaKnown RBP24.65■■□□□ 1.54
SHKBP1-212ENST00000596163 MINK1Q8N4C8 1332 aaPredicted RBP24.64■■□□□ 1.54
SHKBP1-212ENST00000596163 NUTM2FA1L443 756 aa24.64■■□□□ 1.54
SHKBP1-212ENST00000596163 NBPF8Q3BBV2 869 aa24.64■■□□□ 1.54
SHKBP1-212ENST00000596163 EIF3AQ14152 1382 aaKnown RBP24.63■■□□□ 1.53
SHKBP1-212ENST00000596163 AHDC1Q5TGY3 1603 aaPredicted RBP24.62■■□□□ 1.53
SHKBP1-212ENST00000596163 HIRIP3Q9BW71 556 aaPredicted RBP24.62■■□□□ 1.53
SHKBP1-212ENST00000596163 WASLO00401 505 aaPredicted RBP24.61■■□□□ 1.53
SHKBP1-212ENST00000596163 ILDR2Q71H61 639 aa24.61■■□□□ 1.53
SHKBP1-212ENST00000596163 LRRC59Q96AG4 307 aaKnown RBP24.61■■□□□ 1.53
SHKBP1-212ENST00000596163 JCADQ9P266 1359 aa24.61■■□□□ 1.53
SHKBP1-212ENST00000596163 PHLPP1O60346 1717 aa24.6■■□□□ 1.53
SHKBP1-212ENST00000596163 CENPJQ9HC77 1338 aaPredicted RBP24.6■■□□□ 1.53
SHKBP1-212ENST00000596163 NPHP3Q7Z494 1330 aa24.59■■□□□ 1.53
SHKBP1-212ENST00000596163 CARD11Q9BXL7 1154 aa24.57■■□□□ 1.52
SHKBP1-212ENST00000596163 ANKARQ7Z5J8 1434 aa24.57■■□□□ 1.52
SHKBP1-212ENST00000596163 TRPM1Q7Z4N2 1603 aa24.57■■□□□ 1.52
SHKBP1-212ENST00000596163 GPRASP1Q5JY77 1395 aa24.56■■□□□ 1.52
SHKBP1-212ENST00000596163 ADGRB2O60241 1585 aa24.56■■□□□ 1.52
SHKBP1-212ENST00000596163 DDX17Q92841 729 aaKnown RBP24.55■■□□□ 1.52
SHKBP1-212ENST00000596163 PHF8Q9UPP1 1060 aa24.55■■□□□ 1.52
SHKBP1-212ENST00000596163 ARHGEF28Q8N1W1 1705 aaKnown RBP24.55■■□□□ 1.52
SHKBP1-212ENST00000596163 FMN2Q9NZ56 1722 aa24.55■■□□□ 1.52
SHKBP1-212ENST00000596163 FOXO3O43524 673 aa24.54■■□□□ 1.52
SHKBP1-212ENST00000596163 SOS2Q07890 1332 aaPredicted RBP24.54■■□□□ 1.52
SHKBP1-212ENST00000596163 COL16A1Q07092 1604 aaPredicted RBP24.53■■□□□ 1.52
SHKBP1-212ENST00000596163 CDK19Q9BWU1 502 aa24.53■■□□□ 1.52
SHKBP1-212ENST00000596163 SPATA31A6Q5VVP1 1343 aa24.53■■□□□ 1.52
SHKBP1-212ENST00000596163 RALGAPBQ86X10 1494 aa24.51■■□□□ 1.51
SHKBP1-212ENST00000596163 NHSL1Q5SYE7 1610 aa24.51■■□□□ 1.51
SHKBP1-212ENST00000596163 PSME1Q06323 249 aa24.5■■□□□ 1.51
SHKBP1-212ENST00000596163 NUDT16Q96DE0 195 aaKnown RBP24.49■■□□□ 1.51
SHKBP1-212ENST00000596163 PHF23Q9BUL5 403 aaPredicted RBP24.49■■□□□ 1.51
SHKBP1-212ENST00000596163 TULP4Q9NRJ4 1543 aa24.48■■□□□ 1.51
SHKBP1-212ENST00000596163 SRPK2P78362 688 aaKnown RBP24.47■■□□□ 1.51
SHKBP1-212ENST00000596163 KRT28Q7Z3Y7 464 aa24.47■■□□□ 1.51
SHKBP1-212ENST00000596163 EVC2Q86UK5 1308 aa24.46■■□□□ 1.51
SHKBP1-212ENST00000596163 PRR36Q9H6K5 1346 aa24.46■■□□□ 1.51
SHKBP1-212ENST00000596163 PMFBP1Q8TBY8 1022 aa24.46■■□□□ 1.51
SHKBP1-212ENST00000596163 MED1Q15648 1581 aaPredicted RBP24.46■■□□□ 1.51
SHKBP1-212ENST00000596163 CCDC61Q9Y6R9 512 aa24.45■■□□□ 1.5
SHKBP1-212ENST00000596163 KIF1AQ12756 1690 aa24.45■■□□□ 1.5
SHKBP1-212ENST00000596163 XPCQ01831 940 aaPredicted RBP24.44■■□□□ 1.5
SHKBP1-212ENST00000596163 NGDNQ8NEJ9 315 aaKnown RBP24.44■■□□□ 1.5
SHKBP1-212ENST00000596163 PNPLA6Q8IY17 1366 aa24.42■■□□□ 1.5
SHKBP1-212ENST00000596163 MEX3CQ5U5Q3 659 aaKnown RBP24.42■■□□□ 1.5
SHKBP1-212ENST00000596163 PXDNQ92626 1479 aa24.41■■□□□ 1.5
SHKBP1-212ENST00000596163 NUTM2BA6NNL0 878 aaPredicted RBP24.41■■□□□ 1.5
SHKBP1-212ENST00000596163 NUTM2EB1AL46 878 aaPredicted RBP24.41■■□□□ 1.5
SHKBP1-212ENST00000596163 SLC24A1O60721 1099 aa24.41■■□□□ 1.5
SHKBP1-212ENST00000596163 NUTM2AQ8IVF1 878 aaPredicted RBP24.41■■□□□ 1.5
SHKBP1-212ENST00000596163 SHPRHQ149N8 1683 aa24.4■■□□□ 1.5
SHKBP1-212ENST00000596163 CABP2Q9NPB3 220 aa24.4■■□□□ 1.5
SHKBP1-212ENST00000596163 USP32Q8NFA0 1604 aa24.39■■□□□ 1.5
SHKBP1-212ENST00000596163 ATP7BP35670 1465 aa24.38■■□□□ 1.49
SHKBP1-212ENST00000596163 SPATA31A3Q5VYP0 1347 aa24.38■■□□□ 1.49
SHKBP1-212ENST00000596163 PLEKHG3A1L390 1219 aa24.38■■□□□ 1.49
SHKBP1-212ENST00000596163 SBNO1A3KN83 1393 aa24.38■■□□□ 1.49
SHKBP1-212ENST00000596163 SBNO2Q9Y2G9 1366 aa24.38■■□□□ 1.49
SHKBP1-212ENST00000596163 QRICH2Q9H0J4 1663 aa24.37■■□□□ 1.49
SHKBP1-212ENST00000596163 SOCS7O14512 581 aa24.37■■□□□ 1.49
SHKBP1-212ENST00000596163 RGPD8O14715 1765 aaPredicted RBP24.36■■□□□ 1.49
SHKBP1-212ENST00000596163 ST20-MTHFSA0A0A6YYL1 179 aa24.33■■□□□ 1.49
SHKBP1-212ENST00000596163 LMOD2Q6P5Q4 547 aa24.33■■□□□ 1.49
SHKBP1-212ENST00000596163 ACEP12821 1306 aa24.33■■□□□ 1.48
SHKBP1-212ENST00000596163 ARHGEF10O15013 1369 aa24.32■■□□□ 1.48
SHKBP1-212ENST00000596163 TNS3Q68CZ2 1445 aa24.32■■□□□ 1.48
SHKBP1-212ENST00000596163 ITSN1Q15811 1721 aa24.31■■□□□ 1.48
SHKBP1-212ENST00000596163 PPIP5K1Q6PFW1 1433 aa24.31■■□□□ 1.48
SHKBP1-212ENST00000596163 CABP1Q9NZU7 370 aa24.31■■□□□ 1.48
SHKBP1-212ENST00000596163 LRP6O75581 1613 aa24.31■■□□□ 1.48
SHKBP1-212ENST00000596163 POLR3AO14802 1390 aaPredicted RBP24.3■■□□□ 1.48
SHKBP1-212ENST00000596163 ATAD2Q6PL18 1390 aa24.3■■□□□ 1.48
SHKBP1-212ENST00000596163 PAK3O75914 559 aaPredicted RBP24.3■■□□□ 1.48
SHKBP1-212ENST00000596163 PUS7Q96PZ0 661 aaKnown RBP24.29■■□□□ 1.48
SHKBP1-212ENST00000596163 USP47Q96K76 1375 aa24.29■■□□□ 1.48
SHKBP1-212ENST00000596163 ADAMTS2O95450 1211 aa24.28■■□□□ 1.48
SHKBP1-212ENST00000596163 HAP1P54257 671 aaPredicted RBP24.28■■□□□ 1.48
SHKBP1-212ENST00000596163 ZNF772Q68DY9 489 aaPredicted RBP24.28■■□□□ 1.48
SHKBP1-212ENST00000596163 ZNF692Q9BU19 519 aaPredicted RBP24.26■■□□□ 1.47
SHKBP1-212ENST00000596163 BRD4O60885 1362 aaPredicted RBP24.26■■□□□ 1.47
SHKBP1-212ENST00000596163 COL22A1Q8NFW1 1626 aaPredicted RBP24.25■■□□□ 1.47
SHKBP1-212ENST00000596163 NGLY1Q96IV0 654 aa24.25■■□□□ 1.47
SHKBP1-212ENST00000596163 C8orf37Q96NL8 207 aa24.25■■□□□ 1.47
SHKBP1-212ENST00000596163 TESK2Q96S53 571 aa24.25■■□□□ 1.47
SHKBP1-212ENST00000596163 RGS17Q9UGC6 210 aaPredicted RBP24.25■■□□□ 1.47
SHKBP1-212ENST00000596163 TMF1P82094 1093 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms