RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 SLAIN2Q9P270 581 aa20.5■□□□□ 0.87
LIG1-208ENST00000595758 ROCK2O75116 1388 aaKnown RBP20.48■□□□□ 0.87
LIG1-208ENST00000595758 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.48■□□□□ 0.87
LIG1-208ENST00000595758 DCCP43146 1447 aa20.48■□□□□ 0.87
LIG1-208ENST00000595758 SAFB2Q14151 953 aaKnown RBP eCLIP20.48■□□□□ 0.87
LIG1-208ENST00000595758 TRPM1Q7Z4N2 1603 aa20.47■□□□□ 0.87
LIG1-208ENST00000595758 NALCNQ8IZF0 1738 aa20.45■□□□□ 0.86
LIG1-208ENST00000595758 GPRASP1Q5JY77 1395 aa20.43■□□□□ 0.86
LIG1-208ENST00000595758 RALGAPBQ86X10 1494 aa20.43■□□□□ 0.86
LIG1-208ENST00000595758 CARD11Q9BXL7 1154 aa20.42■□□□□ 0.86
LIG1-208ENST00000595758 MINK1Q8N4C8 1332 aaPredicted RBP20.41■□□□□ 0.86
LIG1-208ENST00000595758 MST1RQ04912 1400 aa20.4■□□□□ 0.86
LIG1-208ENST00000595758 ARHGEF28Q8N1W1 1705 aaKnown RBP20.39■□□□□ 0.86
LIG1-208ENST00000595758 CDC42BPGQ6DT37 1551 aa20.39■□□□□ 0.85
LIG1-208ENST00000595758 HIRIP3Q9BW71 556 aaPredicted RBP20.39■□□□□ 0.85
LIG1-208ENST00000595758 CENPJQ9HC77 1338 aaPredicted RBP20.38■□□□□ 0.85
LIG1-208ENST00000595758 C1orf167Q5SNV9 1468 aa20.37■□□□□ 0.85
LIG1-208ENST00000595758 EIF3AQ14152 1382 aaKnown RBP20.36■□□□□ 0.85
LIG1-208ENST00000595758 NUTM2FA1L443 756 aa20.36■□□□□ 0.85
LIG1-208ENST00000595758 HSPA1LP34931 641 aa20.36■□□□□ 0.85
LIG1-208ENST00000595758 BRINP3Q76B58 766 aa20.36■□□□□ 0.85
LIG1-208ENST00000595758 ROBO1Q9Y6N7 1651 aa20.35■□□□□ 0.85
LIG1-208ENST00000595758 WASLO00401 505 aaPredicted RBP20.34■□□□□ 0.85
LIG1-208ENST00000595758 ORAI2Q96SN7 254 aa20.33■□□□□ 0.85
LIG1-208ENST00000595758 ESCO1Q5FWF5 840 aa20.32■□□□□ 0.84
LIG1-208ENST00000595758 ADGRB2O60241 1585 aa20.32■□□□□ 0.84
LIG1-208ENST00000595758 CDK19Q9BWU1 502 aa20.3■□□□□ 0.84
LIG1-208ENST00000595758 FMN2Q9NZ56 1722 aa20.3■□□□□ 0.84
LIG1-208ENST00000595758 ANKARQ7Z5J8 1434 aa20.27■□□□□ 0.84
LIG1-208ENST00000595758 QRICH2Q9H0J4 1663 aa20.27■□□□□ 0.84
LIG1-208ENST00000595758 USP47Q96K76 1375 aa20.25■□□□□ 0.83
LIG1-208ENST00000595758 ST20-MTHFSA0A0A6YYL1 179 aa20.25■□□□□ 0.83
LIG1-208ENST00000595758 SRPK2P78362 688 aaKnown RBP20.25■□□□□ 0.83
LIG1-208ENST00000595758 DDX17Q92841 729 aaKnown RBP20.25■□□□□ 0.83
LIG1-208ENST00000595758 NUDT16Q96DE0 195 aaKnown RBP20.25■□□□□ 0.83
LIG1-208ENST00000595758 PHF8Q9UPP1 1060 aa20.25■□□□□ 0.83
LIG1-208ENST00000595758 TULP4Q9NRJ4 1543 aa20.25■□□□□ 0.83
LIG1-208ENST00000595758 EVC2Q86UK5 1308 aa20.25■□□□□ 0.83
LIG1-208ENST00000595758 PRR36Q9H6K5 1346 aa20.25■□□□□ 0.83
LIG1-208ENST00000595758 FOXO3O43524 673 aa20.23■□□□□ 0.83
LIG1-208ENST00000595758 AHDC1Q5TGY3 1603 aaPredicted RBP20.23■□□□□ 0.83
LIG1-208ENST00000595758 SBNO2Q9Y2G9 1366 aa20.22■□□□□ 0.83
LIG1-208ENST00000595758 CABP2Q9NPB3 220 aa20.22■□□□□ 0.83
LIG1-208ENST00000595758 NPHP3Q7Z494 1330 aa20.22■□□□□ 0.83
LIG1-208ENST00000595758 PHLPP1O60346 1717 aa20.22■□□□□ 0.83
LIG1-208ENST00000595758 USP32Q8NFA0 1604 aa20.21■□□□□ 0.83
LIG1-208ENST00000595758 PMFBP1Q8TBY8 1022 aa20.2■□□□□ 0.82
LIG1-208ENST00000595758 CCDC61Q9Y6R9 512 aa20.2■□□□□ 0.82
LIG1-208ENST00000595758 RGPD8O14715 1765 aaPredicted RBP20.2■□□□□ 0.82
LIG1-208ENST00000595758 ATP7BP35670 1465 aa20.19■□□□□ 0.82
LIG1-208ENST00000595758 SLC24A1O60721 1099 aa20.19■□□□□ 0.82
LIG1-208ENST00000595758 TESK2Q96S53 571 aa20.19■□□□□ 0.82
LIG1-208ENST00000595758 SOS2Q07890 1332 aaPredicted RBP20.19■□□□□ 0.82
LIG1-208ENST00000595758 NHSL1Q5SYE7 1610 aa20.19■□□□□ 0.82
LIG1-208ENST00000595758 LRRC59Q96AG4 307 aaKnown RBP20.18■□□□□ 0.82
LIG1-208ENST00000595758 COL16A1Q07092 1604 aaPredicted RBP20.17■□□□□ 0.82
LIG1-208ENST00000595758 KIF1AQ12756 1690 aa20.17■□□□□ 0.82
LIG1-208ENST00000595758 XPCQ01831 940 aaPredicted RBP20.17■□□□□ 0.82
LIG1-208ENST00000595758 PSME1Q06323 249 aa20.17■□□□□ 0.82
LIG1-208ENST00000595758 EIF4G2P78344 907 aaKnown RBP eCLIP20.16■□□□□ 0.821e-11■■■■■ 55.3
LIG1-208ENST00000595758 KRT28Q7Z3Y7 464 aa20.16■□□□□ 0.82
LIG1-208ENST00000595758 NGDNQ8NEJ9 315 aaKnown RBP20.16■□□□□ 0.82
LIG1-208ENST00000595758 PLEKHG3A1L390 1219 aa20.15■□□□□ 0.82
LIG1-208ENST00000595758 JCADQ9P266 1359 aa20.15■□□□□ 0.82
LIG1-208ENST00000595758 PXDNQ92626 1479 aa20.13■□□□□ 0.81
LIG1-208ENST00000595758 CABP1Q9NZU7 370 aa20.13■□□□□ 0.81
LIG1-208ENST00000595758 PPIP5K1Q6PFW1 1433 aa20.12■□□□□ 0.81
LIG1-208ENST00000595758 ATAD2Q6PL18 1390 aa20.12■□□□□ 0.81
LIG1-208ENST00000595758 HSPA5P11021 654 aaKnown RBP20.12■□□□□ 0.81
LIG1-208ENST00000595758 TMF1P82094 1093 aa20.12■□□□□ 0.81
LIG1-208ENST00000595758 PUS7Q96PZ0 661 aaKnown RBP20.12■□□□□ 0.81
LIG1-208ENST00000595758 ITSN1Q15811 1721 aa20.12■□□□□ 0.81
LIG1-208ENST00000595758 ACEP12821 1306 aa20.11■□□□□ 0.81
LIG1-208ENST00000595758 TOPAZ1Q8N9V7 1692 aa20.1■□□□□ 0.81
LIG1-208ENST00000595758 POLR3AO14802 1390 aaPredicted RBP20.09■□□□□ 0.81
LIG1-208ENST00000595758 SBNO1A3KN83 1393 aa20.08■□□□□ 0.8
LIG1-208ENST00000595758 PNPLA6Q8IY17 1366 aa20.08■□□□□ 0.8
LIG1-208ENST00000595758 DISP3Q9P2K9 1392 aa20.08■□□□□ 0.8
LIG1-208ENST00000595758 SPATA31A3Q5VYP0 1347 aa20.07■□□□□ 0.8
LIG1-208ENST00000595758 CDCA8Q53HL2 280 aa20.07■□□□□ 0.8
LIG1-208ENST00000595758 TMC1Q8TDI8 760 aa20.07■□□□□ 0.8
LIG1-208ENST00000595758 SPATA31A6Q5VVP1 1343 aa20.06■□□□□ 0.8
LIG1-208ENST00000595758 PAK3O75914 559 aaPredicted RBP20.05■□□□□ 0.8
LIG1-208ENST00000595758 LMOD2Q6P5Q4 547 aa20.05■□□□□ 0.8
LIG1-208ENST00000595758 SHPRHQ149N8 1683 aa20.04■□□□□ 0.8
LIG1-208ENST00000595758 TNS3Q68CZ2 1445 aa20.04■□□□□ 0.8
LIG1-208ENST00000595758 SLC12A5Q9H2X9 1139 aa20.04■□□□□ 0.8
LIG1-208ENST00000595758 NUTM2BA6NNL0 878 aaPredicted RBP20.03■□□□□ 0.8
LIG1-208ENST00000595758 NUTM2EB1AL46 878 aaPredicted RBP20.03■□□□□ 0.8
LIG1-208ENST00000595758 NUTM2AQ8IVF1 878 aaPredicted RBP20.03■□□□□ 0.8
LIG1-208ENST00000595758 ZNF692Q9BU19 519 aaPredicted RBP20.03■□□□□ 0.8
LIG1-208ENST00000595758 ARHGEF10O15013 1369 aa20.01■□□□□ 0.79
LIG1-208ENST00000595758 NINLQ9Y2I6 1382 aa20■□□□□ 0.79
LIG1-208ENST00000595758 TERF2IPQ9NYB0 399 aa20■□□□□ 0.79
LIG1-208ENST00000595758 BRD4O60885 1362 aaPredicted RBP19.99■□□□□ 0.79
LIG1-208ENST00000595758 ZEB1P37275 1124 aaPredicted RBP19.99■□□□□ 0.79
LIG1-208ENST00000595758 HDGFL2Q7Z4V5 671 aaPredicted RBP19.99■□□□□ 0.79
LIG1-208ENST00000595758 USP6P35125 1406 aa19.99■□□□□ 0.79
LIG1-208ENST00000595758 CPSF1Q10570 1443 aaKnown RBP19.99■□□□□ 0.79
LIG1-208ENST00000595758 TRPM3Q9HCF6 1732 aaPredicted RBP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms