RNA–Protein interactions for RNA: ENST00000595081.5

PNKP-205, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 2

Gene PNKP, Length 513 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-205	ENST00000595081	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.72	■■■□□ 2.83
PNKP-205	ENST00000595081	ILDR1	Q86SU0	546 aa	Predicted RBP	32.72	■■■□□ 2.83
PNKP-205	ENST00000595081	ATF3	P18847	181 aa		32.71	■■■□□ 2.83
PNKP-205	ENST00000595081	POGK	Q9P215	609 aa		32.7	■■■□□ 2.83
PNKP-205	ENST00000595081	DCC	P43146	1447 aa		32.69	■■■□□ 2.82
PNKP-205	ENST00000595081	CADPS2	Q86UW7	1296 aa		32.69	■■■□□ 2.82
PNKP-205	ENST00000595081	RALGAPB	Q86X10	1494 aa		32.67	■■■□□ 2.82
PNKP-205	ENST00000595081	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.67	■■■□□ 2.82
PNKP-205	ENST00000595081	SLAIN2	Q9P270	581 aa		32.65	■■■□□ 2.82
PNKP-205	ENST00000595081	GPRASP1	Q5JY77	1395 aa		32.63	■■■□□ 2.81
PNKP-205	ENST00000595081	CDC42BPG	Q6DT37	1551 aa		32.61	■■■□□ 2.81
PNKP-205	ENST00000595081	MST1R	Q04912	1400 aa		32.6	■■■□□ 2.81
PNKP-205	ENST00000595081	CARD11	Q9BXL7	1154 aa		32.59	■■■□□ 2.81
PNKP-205	ENST00000595081	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.58	■■■□□ 2.81
PNKP-205	ENST00000595081	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.58	■■■□□ 2.81
PNKP-205	ENST00000595081	ROBO1	Q9Y6N7	1651 aa		32.54	■■■□□ 2.8
PNKP-205	ENST00000595081	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.53	■■■□□ 2.8
PNKP-205	ENST00000595081	NUTM2F	A1L443	756 aa		32.52	■■■□□ 2.8
PNKP-205	ENST00000595081	C1orf167	Q5SNV9	1468 aa		32.52	■■■□□ 2.8
PNKP-205	ENST00000595081	ADGRB2	O60241	1585 aa		32.52	■■■□□ 2.8
PNKP-205	ENST00000595081	FMN2	Q9NZ56	1722 aa		32.49	■■■□□ 2.79
PNKP-205	ENST00000595081	EIF3A	Q14152	1382 aa	Known RBP	32.48	■■■□□ 2.79
PNKP-205	ENST00000595081	BRINP3	Q76B58	766 aa		32.48	■■■□□ 2.79
PNKP-205	ENST00000595081	HSPA1L	P34931	641 aa		32.47	■■■□□ 2.79
PNKP-205	ENST00000595081	QRICH2	Q9H0J4	1663 aa		32.46	■■■□□ 2.79
PNKP-205	ENST00000595081	WASL	O00401	505 aa	Predicted RBP	32.45	■■■□□ 2.79
PNKP-205	ENST00000595081	ORAI2	Q96SN7	254 aa		32.45	■■■□□ 2.79
PNKP-205	ENST00000595081	ESCO1	Q5FWF5	840 aa		32.4	■■■□□ 2.78
PNKP-205	ENST00000595081	CDK19	Q9BWU1	502 aa		32.39	■■■□□ 2.78
PNKP-205	ENST00000595081	USP32	Q8NFA0	1604 aa		32.37	■■■□□ 2.77
PNKP-205	ENST00000595081	PRR36	Q9H6K5	1346 aa		32.37	■■■□□ 2.77
PNKP-205	ENST00000595081	TULP4	Q9NRJ4	1543 aa		32.36	■■■□□ 2.77
PNKP-205	ENST00000595081	ANKAR	Q7Z5J8	1434 aa		32.36	■■■□□ 2.77
PNKP-205	ENST00000595081	USP47	Q96K76	1375 aa		32.36	■■■□□ 2.77
PNKP-205	ENST00000595081	DDX17	Q92841	729 aa	Known RBP	32.36	■■■□□ 2.77
PNKP-205	ENST00000595081	RGPD8	O14715	1765 aa	Predicted RBP	32.35	■■■□□ 2.77
PNKP-205	ENST00000595081	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.33	■■■□□ 2.77
PNKP-205	ENST00000595081	ST20-MTHFS	A0A0A6YYL1	179 aa		32.33	■■■□□ 2.77
PNKP-205	ENST00000595081	PHLPP1	O60346	1717 aa		32.32	■■■□□ 2.76
PNKP-205	ENST00000595081	SBNO2	Q9Y2G9	1366 aa		32.31	■■■□□ 2.76
PNKP-205	ENST00000595081	ATP7B	P35670	1465 aa		32.3	■■■□□ 2.76
PNKP-205	ENST00000595081	NHSL1	Q5SYE7	1610 aa		32.3	■■■□□ 2.76
PNKP-205	ENST00000595081	SRPK2	P78362	688 aa	Known RBP	32.3	■■■□□ 2.76
PNKP-205	ENST00000595081	NUDT16	Q96DE0	195 aa	Known RBP	32.3	■■■□□ 2.76
PNKP-205	ENST00000595081	CABP2	Q9NPB3	220 aa		32.3	■■■□□ 2.76
PNKP-205	ENST00000595081	PHF8	Q9UPP1	1060 aa		32.29	■■■□□ 2.76
PNKP-205	ENST00000595081	EVC2	Q86UK5	1308 aa		32.28	■■■□□ 2.76
PNKP-205	ENST00000595081	COL16A1	Q07092	1604 aa	Predicted RBP	32.27	■■■□□ 2.76
PNKP-205	ENST00000595081	FOXO3	O43524	673 aa		32.27	■■■□□ 2.76
PNKP-205	ENST00000595081	PMFBP1	Q8TBY8	1022 aa		32.26	■■■□□ 2.75
PNKP-205	ENST00000595081	TESK2	Q96S53	571 aa		32.26	■■■□□ 2.75
PNKP-205	ENST00000595081	KIF1A	Q12756	1690 aa		32.25	■■■□□ 2.75
PNKP-205	ENST00000595081	XPC	Q01831	940 aa	Predicted RBP	32.23	■■■□□ 2.75
PNKP-205	ENST00000595081	NPHP3	Q7Z494	1330 aa		32.23	■■■□□ 2.75
PNKP-205	ENST00000595081	CCDC61	Q9Y6R9	512 aa		32.21	■■■□□ 2.75
PNKP-205	ENST00000595081	TOPAZ1	Q8N9V7	1692 aa		32.2	■■■□□ 2.74
PNKP-205	ENST00000595081	SOS2	Q07890	1332 aa	Predicted RBP	32.2	■■■□□ 2.74
PNKP-205	ENST00000595081	ITSN1	Q15811	1721 aa		32.19	■■■□□ 2.74
PNKP-205	ENST00000595081	PXDN	Q92626	1479 aa		32.18	■■■□□ 2.74
PNKP-205	ENST00000595081	EIF4G2	P78344	907 aa	Known RBP eCLIP	32.16	■■■□□ 2.74
PNKP-205	ENST00000595081	PPIP5K1	Q6PFW1	1433 aa		32.16	■■■□□ 2.74
PNKP-205	ENST00000595081	HSPA5	P11021	654 aa	Known RBP	32.15	■■■□□ 2.74
PNKP-205	ENST00000595081	NGDN	Q8NEJ9	315 aa	Known RBP	32.15	■■■□□ 2.74
PNKP-205	ENST00000595081	KRT28	Q7Z3Y7	464 aa		32.14	■■■□□ 2.74
PNKP-205	ENST00000595081	LRRC59	Q96AG4	307 aa	Known RBP	32.13	■■■□□ 2.73
PNKP-205	ENST00000595081	JCAD	Q9P266	1359 aa		32.13	■■■□□ 2.73
PNKP-205	ENST00000595081	DISP3	Q9P2K9	1392 aa		32.13	■■■□□ 2.73
PNKP-205	ENST00000595081	PLEKHG3	A1L390	1219 aa		32.12	■■■□□ 2.73
PNKP-205	ENST00000595081	PSME1	Q06323	249 aa		32.12	■■■□□ 2.73
PNKP-205	ENST00000595081	ATAD2	Q6PL18	1390 aa		32.11	■■■□□ 2.73
PNKP-205	ENST00000595081	CABP1	Q9NZU7	370 aa		32.11	■■■□□ 2.73
PNKP-205	ENST00000595081	ACE	P12821	1306 aa		32.1	■■■□□ 2.73
PNKP-205	ENST00000595081	SLC24A1	O60721	1099 aa		32.09	■■■□□ 2.73
PNKP-205	ENST00000595081	TMF1	P82094	1093 aa		32.09	■■■□□ 2.73
PNKP-205	ENST00000595081	POLR3A	O14802	1390 aa	Predicted RBP	32.08	■■■□□ 2.73
PNKP-205	ENST00000595081	PNPLA6	Q8IY17	1366 aa		32.06	■■■□□ 2.72
PNKP-205	ENST00000595081	SHPRH	Q149N8	1683 aa		32.05	■■■□□ 2.72
PNKP-205	ENST00000595081	SPATA31A3	Q5VYP0	1347 aa		32.03	■■■□□ 2.72
PNKP-205	ENST00000595081	PUS7	Q96PZ0	661 aa	Known RBP	32.03	■■■□□ 2.72
PNKP-205	ENST00000595081	SBNO1	A3KN83	1393 aa		32.02	■■■□□ 2.72
PNKP-205	ENST00000595081	TNS3	Q68CZ2	1445 aa		32.01	■■■□□ 2.72
PNKP-205	ENST00000595081	TMC1	Q8TDI8	760 aa		32.01	■■■□□ 2.71
PNKP-205	ENST00000595081	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32	■■■□□ 2.71
PNKP-205	ENST00000595081	LMOD2	Q6P5Q4	547 aa		31.98	■■■□□ 2.71
PNKP-205	ENST00000595081	SLC12A5	Q9H2X9	1139 aa		31.98	■■■□□ 2.71
PNKP-205	ENST00000595081	PAK3	O75914	559 aa	Predicted RBP	31.97	■■■□□ 2.71
PNKP-205	ENST00000595081	SPATA31A6	Q5VVP1	1343 aa		31.97	■■■□□ 2.71
PNKP-205	ENST00000595081	CDCA8	Q53HL2	280 aa		31.96	■■■□□ 2.71
PNKP-205	ENST00000595081	NUTM2B	A6NNL0	878 aa	Predicted RBP	31.95	■■■□□ 2.71
PNKP-205	ENST00000595081	NUTM2E	B1AL46	878 aa	Predicted RBP	31.95	■■■□□ 2.71
PNKP-205	ENST00000595081	NUTM2A	Q8IVF1	878 aa	Predicted RBP	31.95	■■■□□ 2.71
PNKP-205	ENST00000595081	MED1	Q15648	1581 aa	Predicted RBP	31.94	■■■□□ 2.7
PNKP-205	ENST00000595081	USP6	P35125	1406 aa		31.94	■■■□□ 2.7
PNKP-205	ENST00000595081	LRP6	O75581	1613 aa		31.93	■■■□□ 2.7
PNKP-205	ENST00000595081	CPSF1	Q10570	1443 aa	Known RBP	31.93	■■■□□ 2.7
PNKP-205	ENST00000595081	CD163L1	Q9NR16	1453 aa		31.93	■■■□□ 2.7
PNKP-205	ENST00000595081	COL22A1	Q8NFW1	1626 aa	Predicted RBP	31.93	■■■□□ 2.7
PNKP-205	ENST00000595081	ARHGEF10	O15013	1369 aa		31.92	■■■□□ 2.7
PNKP-205	ENST00000595081	PLEKHG5	O94827	1062 aa		31.91	■■■□□ 2.7
PNKP-205	ENST00000595081	ALS2	Q96Q42	1657 aa		31.91	■■■□□ 2.7

Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms