RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 DLC1Q96QB1 1528 aa21.55■■□□□ 1.04
UPF1-202ENST00000594243 KIAA1210Q9ULL0 1709 aa21.55■■□□□ 1.04
UPF1-202ENST00000594243 PLEKHH1Q9ULM0 1364 aa21.55■■□□□ 1.04
UPF1-202ENST00000594243 ROBO1Q9Y6N7 1651 aa21.54■■□□□ 1.04
UPF1-202ENST00000594243 NBPF1Q3BBV0 1214 aa21.53■■□□□ 1.04
UPF1-202ENST00000594243 MST1RQ04912 1400 aa21.53■■□□□ 1.04
UPF1-202ENST00000594243 SAFB2Q14151 953 aaKnown RBP eCLIP21.51■■□□□ 1.03
UPF1-202ENST00000594243 BRINP3Q76B58 766 aa21.5■■□□□ 1.03
UPF1-202ENST00000594243 CCER1Q8TC90 406 aaPredicted RBP21.49■■□□□ 1.03
UPF1-202ENST00000594243 MED1Q15648 1581 aaPredicted RBP21.48■■□□□ 1.03
UPF1-202ENST00000594243 CDC42BPGQ6DT37 1551 aa21.48■■□□□ 1.03
UPF1-202ENST00000594243 C1orf167Q5SNV9 1468 aa21.48■■□□□ 1.03
UPF1-202ENST00000594243 TIMELESSQ9UNS1 1208 aa21.47■■□□□ 1.03
UPF1-202ENST00000594243 NBPF8Q3BBV2 869 aa21.46■■□□□ 1.03
UPF1-202ENST00000594243 ROCK2O75116 1388 aaKnown RBP21.45■■□□□ 1.02
UPF1-202ENST00000594243 ORAI2Q96SN7 254 aa21.44■■□□□ 1.02
UPF1-202ENST00000594243 TRPM1Q7Z4N2 1603 aa21.44■■□□□ 1.02
UPF1-202ENST00000594243 NUTM2FA1L443 756 aa21.43■■□□□ 1.02
UPF1-202ENST00000594243 ESCO1Q5FWF5 840 aa21.43■■□□□ 1.02
UPF1-202ENST00000594243 MINK1Q8N4C8 1332 aaPredicted RBP21.43■■□□□ 1.02
UPF1-202ENST00000594243 PHLPP1O60346 1717 aa21.41■■□□□ 1.02
UPF1-202ENST00000594243 HIRIP3Q9BW71 556 aaPredicted RBP21.41■■□□□ 1.02
UPF1-202ENST00000594243 ARHGEF28Q8N1W1 1705 aaKnown RBP21.41■■□□□ 1.02
UPF1-202ENST00000594243 AHDC1Q5TGY3 1603 aaPredicted RBP21.4■■□□□ 1.02
UPF1-202ENST00000594243 WASLO00401 505 aaPredicted RBP21.39■■□□□ 1.01
UPF1-202ENST00000594243 FMN2Q9NZ56 1722 aa21.38■■□□□ 1.01
UPF1-202ENST00000594243 CENPJQ9HC77 1338 aaPredicted RBP21.38■■□□□ 1.01
UPF1-202ENST00000594243 ADGRB2O60241 1585 aa21.38■■□□□ 1.01
UPF1-202ENST00000594243 EIF3AQ14152 1382 aaKnown RBP21.37■■□□□ 1.01
UPF1-202ENST00000594243 LRRC59Q96AG4 307 aaKnown RBP21.37■■□□□ 1.01
UPF1-202ENST00000594243 CARD11Q9BXL7 1154 aa21.37■■□□□ 1.01
UPF1-202ENST00000594243 GPRASP1Q5JY77 1395 aa21.36■■□□□ 1.01
UPF1-202ENST00000594243 SOCS7O14512 581 aa21.36■■□□□ 1.01
UPF1-202ENST00000594243 JCADQ9P266 1359 aa21.36■■□□□ 1.01
UPF1-202ENST00000594243 DDX17Q92841 729 aaKnown RBP21.35■■□□□ 1.01
UPF1-202ENST00000594243 NPHP3Q7Z494 1330 aa21.34■■□□□ 1.01
UPF1-202ENST00000594243 RALGAPBQ86X10 1494 aa21.34■■□□□ 1.01
UPF1-202ENST00000594243 COL16A1Q07092 1604 aaPredicted RBP21.34■■□□□ 1.01
UPF1-202ENST00000594243 NHSL1Q5SYE7 1610 aa21.34■■□□□ 1.01
UPF1-202ENST00000594243 ANKARQ7Z5J8 1434 aa21.34■■□□□ 1.01
UPF1-202ENST00000594243 FOXO3O43524 673 aa21.33■■□□□ 1.01
UPF1-202ENST00000594243 CDK19Q9BWU1 502 aa21.33■■□□□ 1.01
UPF1-202ENST00000594243 PHF8Q9UPP1 1060 aa21.33■■□□□ 1.01
UPF1-202ENST00000594243 SOS2Q07890 1332 aaPredicted RBP21.32■■□□□ 1
UPF1-202ENST00000594243 TULP4Q9NRJ4 1543 aa21.3■■□□□ 1
UPF1-202ENST00000594243 PHF23Q9BUL5 403 aaPredicted RBP21.3■■□□□ 1
UPF1-202ENST00000594243 NUDT16Q96DE0 195 aaKnown RBP21.29■■□□□ 1
UPF1-202ENST00000594243 SPATA31A6Q5VVP1 1343 aa21.29■■□□□ 1
UPF1-202ENST00000594243 KIF1AQ12756 1690 aa21.28■■□□□ 1
UPF1-202ENST00000594243 PRR36Q9H6K5 1346 aa21.28■■□□□ 1
UPF1-202ENST00000594243 SRPK2P78362 688 aaKnown RBP21.27■■□□□ 1
UPF1-202ENST00000594243 PSME1Q06323 249 aa21.27■■□□□ 1
UPF1-202ENST00000594243 PMFBP1Q8TBY8 1022 aa21.27■■□□□ 1
UPF1-202ENST00000594243 USP32Q8NFA0 1604 aa21.26■□□□□ 0.99
UPF1-202ENST00000594243 RGPD8O14715 1765 aaPredicted RBP21.26■□□□□ 0.99
UPF1-202ENST00000594243 QRICH2Q9H0J4 1663 aa21.26■□□□□ 0.99
UPF1-202ENST00000594243 KRT28Q7Z3Y7 464 aa21.26■□□□□ 0.99
UPF1-202ENST00000594243 CCDC61Q9Y6R9 512 aa21.26■□□□□ 0.99
UPF1-202ENST00000594243 EVC2Q86UK5 1308 aa21.26■□□□□ 0.99
UPF1-202ENST00000594243 XPCQ01831 940 aaPredicted RBP21.24■□□□□ 0.99
UPF1-202ENST00000594243 NGDNQ8NEJ9 315 aaKnown RBP21.23■□□□□ 0.99
UPF1-202ENST00000594243 PXDNQ92626 1479 aa21.23■□□□□ 0.99
UPF1-202ENST00000594243 SHPRHQ149N8 1683 aa21.23■□□□□ 0.99
UPF1-202ENST00000594243 ATP7BP35670 1465 aa21.22■□□□□ 0.99
UPF1-202ENST00000594243 SLC24A1O60721 1099 aa21.22■□□□□ 0.99
UPF1-202ENST00000594243 CABP2Q9NPB3 220 aa21.22■□□□□ 0.99
UPF1-202ENST00000594243 PNPLA6Q8IY17 1366 aa21.22■□□□□ 0.99
UPF1-202ENST00000594243 SBNO2Q9Y2G9 1366 aa21.21■□□□□ 0.99
UPF1-202ENST00000594243 PLEKHG3A1L390 1219 aa21.19■□□□□ 0.98
UPF1-202ENST00000594243 NUTM2BA6NNL0 878 aaPredicted RBP21.19■□□□□ 0.98
UPF1-202ENST00000594243 NUTM2EB1AL46 878 aaPredicted RBP21.19■□□□□ 0.98
UPF1-202ENST00000594243 NUTM2AQ8IVF1 878 aaPredicted RBP21.19■□□□□ 0.98
UPF1-202ENST00000594243 SPATA31A3Q5VYP0 1347 aa21.19■□□□□ 0.98
UPF1-202ENST00000594243 ITSN1Q15811 1721 aa21.18■□□□□ 0.98
UPF1-202ENST00000594243 ST20-MTHFSA0A0A6YYL1 179 aa21.18■□□□□ 0.98
UPF1-202ENST00000594243 MEX3CQ5U5Q3 659 aaKnown RBP21.17■□□□□ 0.98
UPF1-202ENST00000594243 SBNO1A3KN83 1393 aa21.17■□□□□ 0.98
UPF1-202ENST00000594243 PPIP5K1Q6PFW1 1433 aa21.15■□□□□ 0.98
UPF1-202ENST00000594243 ACEP12821 1306 aa21.15■□□□□ 0.98
UPF1-202ENST00000594243 POLR3AO14802 1390 aaPredicted RBP21.14■□□□□ 0.98
UPF1-202ENST00000594243 USP47Q96K76 1375 aa21.14■□□□□ 0.98
UPF1-202ENST00000594243 CABP1Q9NZU7 370 aa21.14■□□□□ 0.97
UPF1-202ENST00000594243 TNS3Q68CZ2 1445 aa21.13■□□□□ 0.97
UPF1-202ENST00000594243 LMOD2Q6P5Q4 547 aa21.13■□□□□ 0.97
UPF1-202ENST00000594243 ATAD2Q6PL18 1390 aa21.12■□□□□ 0.97
UPF1-202ENST00000594243 TOPAZ1Q8N9V7 1692 aa21.12■□□□□ 0.97
UPF1-202ENST00000594243 LRP6O75581 1613 aa21.12■□□□□ 0.97
UPF1-202ENST00000594243 PUS7Q96PZ0 661 aaKnown RBP21.12■□□□□ 0.97
UPF1-202ENST00000594243 TESK2Q96S53 571 aa21.12■□□□□ 0.97
UPF1-202ENST00000594243 ARHGEF10O15013 1369 aa21.11■□□□□ 0.97
UPF1-202ENST00000594243 COL22A1Q8NFW1 1626 aaPredicted RBP21.11■□□□□ 0.97
UPF1-202ENST00000594243 PAK3O75914 559 aaPredicted RBP21.11■□□□□ 0.97
UPF1-202ENST00000594243 ZNF692Q9BU19 519 aaPredicted RBP21.09■□□□□ 0.97
UPF1-202ENST00000594243 RGS17Q9UGC6 210 aaPredicted RBP21.09■□□□□ 0.97
UPF1-202ENST00000594243 ADAMTS2O95450 1211 aa21.08■□□□□ 0.97
UPF1-202ENST00000594243 TMF1P82094 1093 aa21.08■□□□□ 0.97
UPF1-202ENST00000594243 HAP1P54257 671 aaPredicted RBP21.07■□□□□ 0.96
UPF1-202ENST00000594243 BRD4O60885 1362 aaPredicted RBP21.07■□□□□ 0.96
UPF1-202ENST00000594243 C8orf37Q96NL8 207 aa21.06■□□□□ 0.96
UPF1-202ENST00000594243 TRPM3Q9HCF6 1732 aaPredicted RBP21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms