RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 PRAM1Q96QH2 718 aa20.98■□□□□ 0.95
VRK3-206ENST00000594090 TRPM1Q7Z4N2 1603 aa20.98■□□□□ 0.95
VRK3-206ENST00000594090 TONSLQ96HA7 1378 aa20.97■□□□□ 0.95
VRK3-206ENST00000594090 TRAK1Q9UPV9 953 aa20.97■□□□□ 0.95
VRK3-206ENST00000594090 PHLPP1O60346 1717 aa20.97■□□□□ 0.95
VRK3-206ENST00000594090 AHDC1Q5TGY3 1603 aaPredicted RBP20.97■□□□□ 0.95
VRK3-206ENST00000594090 C1orf167Q5SNV9 1468 aa20.97■□□□□ 0.95
VRK3-206ENST00000594090 FMN2Q9NZ56 1722 aa20.96■□□□□ 0.95
VRK3-206ENST00000594090 BRINP3Q76B58 766 aa20.95■□□□□ 0.95
VRK3-206ENST00000594090 ADGRB2O60241 1585 aa20.95■□□□□ 0.94
VRK3-206ENST00000594090 COL16A1Q07092 1604 aaPredicted RBP20.94■□□□□ 0.94
VRK3-206ENST00000594090 NHSL1Q5SYE7 1610 aa20.94■□□□□ 0.94
VRK3-206ENST00000594090 NBPF1Q3BBV0 1214 aa20.94■□□□□ 0.94
VRK3-206ENST00000594090 POGKQ9P215 609 aa20.94■□□□□ 0.94
VRK3-206ENST00000594090 SAFB2Q14151 953 aaKnown RBP eCLIP20.93■□□□□ 0.94
VRK3-206ENST00000594090 CLSPNQ9HAW4 1339 aa20.9■□□□□ 0.94
VRK3-206ENST00000594090 NBPF8Q3BBV2 869 aa20.88■□□□□ 0.93
VRK3-206ENST00000594090 ROCK2O75116 1388 aaKnown RBP20.87■□□□□ 0.93
VRK3-206ENST00000594090 ORAI2Q96SN7 254 aa20.87■□□□□ 0.93
VRK3-206ENST00000594090 MED1Q15648 1581 aaPredicted RBP20.86■□□□□ 0.93
VRK3-206ENST00000594090 NUTM2FA1L443 756 aa20.86■□□□□ 0.93
VRK3-206ENST00000594090 MINK1Q8N4C8 1332 aaPredicted RBP20.85■□□□□ 0.93
VRK3-206ENST00000594090 HIRIP3Q9BW71 556 aaPredicted RBP20.85■□□□□ 0.93
VRK3-206ENST00000594090 RALGAPBQ86X10 1494 aa20.84■□□□□ 0.93
VRK3-206ENST00000594090 USP32Q8NFA0 1604 aa20.84■□□□□ 0.93
VRK3-206ENST00000594090 RGPD8O14715 1765 aaPredicted RBP20.84■□□□□ 0.93
VRK3-206ENST00000594090 KIF1AQ12756 1690 aa20.83■□□□□ 0.93
VRK3-206ENST00000594090 GPRASP1Q5JY77 1395 aa20.83■□□□□ 0.93
VRK3-206ENST00000594090 ESCO1Q5FWF5 840 aa20.83■□□□□ 0.93
VRK3-206ENST00000594090 DDX17Q92841 729 aaKnown RBP20.83■□□□□ 0.93
VRK3-206ENST00000594090 QRICH2Q9H0J4 1663 aa20.83■□□□□ 0.92
VRK3-206ENST00000594090 JCADQ9P266 1359 aa20.82■□□□□ 0.92
VRK3-206ENST00000594090 ANKARQ7Z5J8 1434 aa20.82■□□□□ 0.92
VRK3-206ENST00000594090 SHPRHQ149N8 1683 aa20.82■□□□□ 0.92
VRK3-206ENST00000594090 TULP4Q9NRJ4 1543 aa20.82■□□□□ 0.92
VRK3-206ENST00000594090 CCER1Q8TC90 406 aaPredicted RBP20.81■□□□□ 0.92
VRK3-206ENST00000594090 EIF3AQ14152 1382 aaKnown RBP20.81■□□□□ 0.92
VRK3-206ENST00000594090 WASLO00401 505 aaPredicted RBP20.79■□□□□ 0.92
VRK3-206ENST00000594090 CENPJQ9HC77 1338 aaPredicted RBP20.79■□□□□ 0.92
VRK3-206ENST00000594090 SOS2Q07890 1332 aaPredicted RBP20.78■□□□□ 0.92
VRK3-206ENST00000594090 NPHP3Q7Z494 1330 aa20.78■□□□□ 0.92
VRK3-206ENST00000594090 PXDNQ92626 1479 aa20.77■□□□□ 0.92
VRK3-206ENST00000594090 ATP7BP35670 1465 aa20.76■□□□□ 0.91
VRK3-206ENST00000594090 DISP3Q9P2K9 1392 aa20.76■□□□□ 0.91
VRK3-206ENST00000594090 PRR36Q9H6K5 1346 aa20.76■□□□□ 0.91
VRK3-206ENST00000594090 ITSN1Q15811 1721 aa20.75■□□□□ 0.91
VRK3-206ENST00000594090 TIMELESSQ9UNS1 1208 aa20.75■□□□□ 0.91
VRK3-206ENST00000594090 PHF8Q9UPP1 1060 aa20.75■□□□□ 0.91
VRK3-206ENST00000594090 FOXO3O43524 673 aa20.74■□□□□ 0.91
VRK3-206ENST00000594090 LRRC59Q96AG4 307 aaKnown RBP20.74■□□□□ 0.91
VRK3-206ENST00000594090 CARD11Q9BXL7 1154 aa20.74■□□□□ 0.91
VRK3-206ENST00000594090 TOPAZ1Q8N9V7 1692 aa20.73■□□□□ 0.91
VRK3-206ENST00000594090 PNPLA6Q8IY17 1366 aa20.73■□□□□ 0.91
VRK3-206ENST00000594090 SPATA31A6Q5VVP1 1343 aa20.72■□□□□ 0.91
VRK3-206ENST00000594090 CDK19Q9BWU1 502 aa20.72■□□□□ 0.91
VRK3-206ENST00000594090 LRP6O75581 1613 aa20.71■□□□□ 0.91
VRK3-206ENST00000594090 XPCQ01831 940 aaPredicted RBP20.7■□□□□ 0.9
VRK3-206ENST00000594090 COL22A1Q8NFW1 1626 aaPredicted RBP20.69■□□□□ 0.9
VRK3-206ENST00000594090 PMFBP1Q8TBY8 1022 aa20.69■□□□□ 0.9
VRK3-206ENST00000594090 NUDT16Q96DE0 195 aaKnown RBP20.69■□□□□ 0.9
VRK3-206ENST00000594090 SBNO2Q9Y2G9 1366 aa20.67■□□□□ 0.9
VRK3-206ENST00000594090 SRPK2P78362 688 aaKnown RBP20.66■□□□□ 0.9
VRK3-206ENST00000594090 KRT28Q7Z3Y7 464 aa20.66■□□□□ 0.9
VRK3-206ENST00000594090 TRPM3Q9HCF6 1732 aaPredicted RBP20.65■□□□□ 0.9
VRK3-206ENST00000594090 PHF23Q9BUL5 403 aaPredicted RBP20.65■□□□□ 0.9
VRK3-206ENST00000594090 EVC2Q86UK5 1308 aa20.65■□□□□ 0.9
VRK3-206ENST00000594090 TNS3Q68CZ2 1445 aa20.64■□□□□ 0.89
VRK3-206ENST00000594090 CABP2Q9NPB3 220 aa20.63■□□□□ 0.89
VRK3-206ENST00000594090 CCDC61Q9Y6R9 512 aa20.63■□□□□ 0.89
VRK3-206ENST00000594090 SPATA31A3Q5VYP0 1347 aa20.63■□□□□ 0.89
VRK3-206ENST00000594090 SBNO1A3KN83 1393 aa20.63■□□□□ 0.89
VRK3-206ENST00000594090 NUTM2BA6NNL0 878 aaPredicted RBP20.62■□□□□ 0.89
VRK3-206ENST00000594090 NUTM2EB1AL46 878 aaPredicted RBP20.62■□□□□ 0.89
VRK3-206ENST00000594090 PSME1Q06323 249 aa20.62■□□□□ 0.89
VRK3-206ENST00000594090 NUTM2AQ8IVF1 878 aaPredicted RBP20.62■□□□□ 0.89
VRK3-206ENST00000594090 NGDNQ8NEJ9 315 aaKnown RBP20.61■□□□□ 0.89
VRK3-206ENST00000594090 PPIP5K1Q6PFW1 1433 aa20.61■□□□□ 0.89
VRK3-206ENST00000594090 POLR3AO14802 1390 aaPredicted RBP20.61■□□□□ 0.89
VRK3-206ENST00000594090 ALS2Q96Q42 1657 aa20.6■□□□□ 0.89
VRK3-206ENST00000594090 MEX3CQ5U5Q3 659 aaKnown RBP20.6■□□□□ 0.89
VRK3-206ENST00000594090 USP47Q96K76 1375 aa20.59■□□□□ 0.89
VRK3-206ENST00000594090 PLEKHG3A1L390 1219 aa20.59■□□□□ 0.89
VRK3-206ENST00000594090 ACEP12821 1306 aa20.58■□□□□ 0.88
VRK3-206ENST00000594090 RGS17Q9UGC6 210 aaPredicted RBP20.57■□□□□ 0.88
VRK3-206ENST00000594090 ARHGEF10O15013 1369 aa20.57■□□□□ 0.88
VRK3-206ENST00000594090 ABCA3Q99758 1704 aa20.57■□□□□ 0.88
VRK3-206ENST00000594090 ST20-MTHFSA0A0A6YYL1 179 aa20.56■□□□□ 0.88
VRK3-206ENST00000594090 ATAD2Q6PL18 1390 aa20.56■□□□□ 0.88
VRK3-206ENST00000594090 TESK2Q96S53 571 aa20.55■□□□□ 0.88
VRK3-206ENST00000594090 MARF1Q9Y4F3 1742 aaKnown RBP20.55■□□□□ 0.88
VRK3-206ENST00000594090 LMOD2Q6P5Q4 547 aa20.53■□□□□ 0.88
VRK3-206ENST00000594090 CABP1Q9NZU7 370 aa20.53■□□□□ 0.88
VRK3-206ENST00000594090 ADAMTS2O95450 1211 aa20.53■□□□□ 0.88
VRK3-206ENST00000594090 ILDR2Q71H61 639 aa20.53■□□□□ 0.88
VRK3-206ENST00000594090 AKAP12Q02952 1782 aa20.51■□□□□ 0.87
VRK3-206ENST00000594090 CRYBG1Q9Y4K1 1723 aa20.51■□□□□ 0.87
VRK3-206ENST00000594090 PAK3O75914 559 aaPredicted RBP20.51■□□□□ 0.87
VRK3-206ENST00000594090 C8orf37Q96NL8 207 aa20.5■□□□□ 0.87
VRK3-206ENST00000594090 USP6P35125 1406 aa20.49■□□□□ 0.87
VRK3-206ENST00000594090 AFF2P51816 1311 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms