RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 EP400Q96L91 3159 aa17.64■□□□□ 0.41
CLIP3-204ENST00000590559 MPHOSPH9Q99550 1183 aa17.63■□□□□ 0.41
CLIP3-204ENST00000590559 MARF1Q9Y4F3 1742 aaKnown RBP17.63■□□□□ 0.41
CLIP3-204ENST00000590559 PIK3C2GO75747 1445 aa17.63■□□□□ 0.41
CLIP3-204ENST00000590559 ANKRD30BQ9BXX2 1392 aa17.62■□□□□ 0.41
CLIP3-204ENST00000590559 RGS12O14924 1447 aa17.62■□□□□ 0.41
CLIP3-204ENST00000590559 PXDNQ92626 1479 aa17.62■□□□□ 0.41
CLIP3-204ENST00000590559 C8orf37Q96NL8 207 aa17.61■□□□□ 0.41
CLIP3-204ENST00000590559 LRPPRCP42704 1394 aaKnown RBP17.61■□□□□ 0.41
CLIP3-204ENST00000590559 ABCC11Q96J66 1382 aa17.61■□□□□ 0.41
CLIP3-204ENST00000590559 FMN2Q9NZ56 1722 aa17.61■□□□□ 0.41
CLIP3-204ENST00000590559 QTRT2Q9H974 415 aaKnown RBP17.6■□□□□ 0.41
CLIP3-204ENST00000590559 MYOM2P54296 1465 aa17.6■□□□□ 0.41
CLIP3-204ENST00000590559 NRXN1Q9ULB1 1477 aa17.59■□□□□ 0.41
CLIP3-204ENST00000590559 RBM6P78332 1123 aaKnown RBP17.59■□□□□ 0.41
CLIP3-204ENST00000590559 RGL3Q3MIN7 710 aa17.58■□□□□ 0.4
CLIP3-204ENST00000590559 FNBP4Q8N3X1 1017 aaPredicted RBP17.57■□□□□ 0.4
CLIP3-204ENST00000590559 SRCAPQ6ZRS2 3230 aa17.57■□□□□ 0.4
CLIP3-204ENST00000590559 PLEKHH1Q9ULM0 1364 aa17.56■□□□□ 0.4
CLIP3-204ENST00000590559 NPHP3Q7Z494 1330 aa17.56■□□□□ 0.4
CLIP3-204ENST00000590559 ADAMTS2O95450 1211 aa17.56■□□□□ 0.4
CLIP3-204ENST00000590559 WAPLQ7Z5K2 1190 aa17.56■□□□□ 0.4
CLIP3-204ENST00000590559 RGPD8O14715 1765 aaPredicted RBP17.56■□□□□ 0.4
CLIP3-204ENST00000590559 YTHDC2Q9H6S0 1430 aaKnown RBP17.55■□□□□ 0.4
CLIP3-204ENST00000590559 NGLY1Q96IV0 654 aa17.55■□□□□ 0.4
CLIP3-204ENST00000590559 KIF1AQ12756 1690 aa17.55■□□□□ 0.4
CLIP3-204ENST00000590559 ESCO1Q5FWF5 840 aa17.54■□□□□ 0.4
CLIP3-204ENST00000590559 TMEM132EQ6IEE7 984 aa17.54■□□□□ 0.4
CLIP3-204ENST00000590559 SIRT1Q96EB6 747 aa17.54■□□□□ 0.4
CLIP3-204ENST00000590559 ATRNO75882 1429 aa17.54■□□□□ 0.4
CLIP3-204ENST00000590559 ACIN1Q9UKV3 1341 aaKnown RBP17.53■□□□□ 0.4
CLIP3-204ENST00000590559 STK26Q9P289 416 aa17.53■□□□□ 0.4
CLIP3-204ENST00000590559 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.52■□□□□ 0.4
CLIP3-204ENST00000590559 BCL9LQ86UU0 1499 aa17.52■□□□□ 0.4
CLIP3-204ENST00000590559 C14orf93Q9H972 538 aaKnown RBP17.52■□□□□ 0.4
CLIP3-204ENST00000590559 FOXO3O43524 673 aa17.51■□□□□ 0.39
CLIP3-204ENST00000590559 USP21Q9UK80 565 aa17.51■□□□□ 0.39
CLIP3-204ENST00000590559 TRPC5Q9UL62 973 aaPredicted RBP17.5■□□□□ 0.39
CLIP3-204ENST00000590559 DLC1Q96QB1 1528 aa17.47■□□□□ 0.39
CLIP3-204ENST00000590559 USP32Q8NFA0 1604 aa17.47■□□□□ 0.39
CLIP3-204ENST00000590559 NUTM2FA1L443 756 aa17.47■□□□□ 0.39
CLIP3-204ENST00000590559 XPCQ01831 940 aaPredicted RBP17.47■□□□□ 0.39
CLIP3-204ENST00000590559 SPATA31A3Q5VYP0 1347 aa17.47■□□□□ 0.39
CLIP3-204ENST00000590559 ADGRB1O14514 1584 aa17.46■□□□□ 0.39
CLIP3-204ENST00000590559 CFAP70Q5T0N1 1121 aa17.46■□□□□ 0.39
CLIP3-204ENST00000590559 SLIT2O94813 1529 aa17.46■□□□□ 0.39
CLIP3-204ENST00000590559 ADGRB2O60241 1585 aa17.45■□□□□ 0.38
CLIP3-204ENST00000590559 RAB3GAP2Q9H2M9 1393 aa17.45■□□□□ 0.38
CLIP3-204ENST00000590559 ABCA3Q99758 1704 aa17.45■□□□□ 0.38
CLIP3-204ENST00000590559 DHX57Q6P158 1386 aaKnown RBP17.44■□□□□ 0.38
CLIP3-204ENST00000590559 ATAD2Q6PL18 1390 aa17.44■□□□□ 0.38
CLIP3-204ENST00000590559 GLI3P10071 1580 aa17.44■□□□□ 0.38
CLIP3-204ENST00000590559 KRT28Q7Z3Y7 464 aa17.42■□□□□ 0.38
CLIP3-204ENST00000590559 TRPM3Q9HCF6 1732 aaPredicted RBP17.41■□□□□ 0.38
CLIP3-204ENST00000590559 TNS3Q68CZ2 1445 aa17.41■□□□□ 0.38
CLIP3-204ENST00000590559 NWD2Q9ULI1 1742 aa17.41■□□□□ 0.38
CLIP3-204ENST00000590559 BRWD3Q6RI45 1802 aa17.4■□□□□ 0.38
CLIP3-204ENST00000590559 PLCH1Q4KWH8 1693 aa17.4■□□□□ 0.38
CLIP3-204ENST00000590559 GJD4Q96KN9 370 aaPredicted RBP17.4■□□□□ 0.38
CLIP3-204ENST00000590559 PHF8Q9UPP1 1060 aa17.4■□□□□ 0.38
CLIP3-204ENST00000590559 SBNO1A3KN83 1393 aa17.4■□□□□ 0.38
CLIP3-204ENST00000590559 ANKARQ7Z5J8 1434 aa17.39■□□□□ 0.38
CLIP3-204ENST00000590559 PRAM1Q96QH2 718 aa17.39■□□□□ 0.37
CLIP3-204ENST00000590559 RALGAPBQ86X10 1494 aa17.38■□□□□ 0.37
CLIP3-204ENST00000590559 UNC5CLQ8IV45 518 aa17.38■□□□□ 0.37
CLIP3-204ENST00000590559 ALS2Q96Q42 1657 aa17.38■□□□□ 0.37
CLIP3-204ENST00000590559 CRYBG1Q9Y4K1 1723 aa17.35■□□□□ 0.37
CLIP3-204ENST00000590559 PSME1Q06323 249 aa17.35■□□□□ 0.37
CLIP3-204ENST00000590559 NRAPQ86VF7 1730 aa17.35■□□□□ 0.37
CLIP3-204ENST00000590559 HRCP23327 699 aa17.34■□□□□ 0.37
CLIP3-204ENST00000590559 SAFB2Q14151 953 aaKnown RBP eCLIP17.34■□□□□ 0.37
CLIP3-204ENST00000590559 ARHGEF28Q8N1W1 1705 aaKnown RBP17.34■□□□□ 0.37
CLIP3-204ENST00000590559 TULP4Q9NRJ4 1543 aa17.33■□□□□ 0.37
CLIP3-204ENST00000590559 ARHGEF10O15013 1369 aa17.33■□□□□ 0.36
CLIP3-204ENST00000590559 CCDC125Q86Z20 511 aa17.33■□□□□ 0.36
CLIP3-204ENST00000590559 CABLES1Q8TDN4 633 aa17.33■□□□□ 0.36
CLIP3-204ENST00000590559 PRR36Q9H6K5 1346 aa17.32■□□□□ 0.36
CLIP3-204ENST00000590559 ONECUT3O60422 494 aaPredicted RBP17.32■□□□□ 0.36
CLIP3-204ENST00000590559 STAC3Q96MF2 364 aa17.32■□□□□ 0.36
CLIP3-204ENST00000590559 VPS72Q15906 364 aa17.31■□□□□ 0.36
CLIP3-204ENST00000590559 POGKQ9P215 609 aa17.31■□□□□ 0.36
CLIP3-204ENST00000590559 PMFBP1Q8TBY8 1022 aa17.3■□□□□ 0.36
CLIP3-204ENST00000590559 TRAK1Q9UPV9 953 aa17.3■□□□□ 0.36
CLIP3-204ENST00000590559 ITSN1Q15811 1721 aa17.3■□□□□ 0.36
CLIP3-204ENST00000590559 DCAF11Q8TEB1 546 aa17.29■□□□□ 0.36
CLIP3-204ENST00000590559 COL14A1Q05707 1796 aaKnown RBP17.28■□□□□ 0.36
CLIP3-204ENST00000590559 KIAA1210Q9ULL0 1709 aa17.28■□□□□ 0.36
CLIP3-204ENST00000590559 HIRIP3Q9BW71 556 aaPredicted RBP17.28■□□□□ 0.36
CLIP3-204ENST00000590559 EIF3AQ14152 1382 aaKnown RBP17.28■□□□□ 0.36
CLIP3-204ENST00000590559 FAM83GA6ND36 823 aa17.27■□□□□ 0.36
CLIP3-204ENST00000590559 WASLO00401 505 aaPredicted RBP17.27■□□□□ 0.36
CLIP3-204ENST00000590559 BLMP54132 1417 aaPredicted RBP17.27■□□□□ 0.35
CLIP3-204ENST00000590559 MINK1Q8N4C8 1332 aaPredicted RBP17.26■□□□□ 0.35
CLIP3-204ENST00000590559 ATP7BP35670 1465 aa17.26■□□□□ 0.35
CLIP3-204ENST00000590559 KDM2AQ9Y2K7 1162 aa17.26■□□□□ 0.35
CLIP3-204ENST00000590559 TOPAZ1Q8N9V7 1692 aa17.26■□□□□ 0.35
CLIP3-204ENST00000590559 SEPT12Q8IYM1 358 aa17.25■□□□□ 0.35
CLIP3-204ENST00000590559 HAP1P54257 671 aaPredicted RBP17.24■□□□□ 0.35
CLIP3-204ENST00000590559 LMOD2Q6P5Q4 547 aa17.23■□□□□ 0.35
CLIP3-204ENST00000590559 GPRASP1Q5JY77 1395 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms