RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 HFM1A2PYH4 1435 aa26.39■■□□□ 1.81
RETREG3-210ENST00000590541 NPHP3Q7Z494 1330 aa26.36■■□□□ 1.81
RETREG3-210ENST00000590541 PXDNQ92626 1479 aa26.36■■□□□ 1.81
RETREG3-210ENST00000590541 FOXD1Q16676 465 aa26.35■■□□□ 1.81
RETREG3-210ENST00000590541 EP400Q96L91 3159 aa26.34■■□□□ 1.81
RETREG3-210ENST00000590541 ESCO1Q5FWF5 840 aa26.34■■□□□ 1.81
RETREG3-210ENST00000590541 CCDC125Q86Z20 511 aa26.33■■□□□ 1.81
RETREG3-210ENST00000590541 MARF1Q9Y4F3 1742 aaKnown RBP26.33■■□□□ 1.81
RETREG3-210ENST00000590541 RPGRIP1LQ68CZ1 1315 aa26.33■■□□□ 1.81
RETREG3-210ENST00000590541 CDC42BPGQ6DT37 1551 aa26.33■■□□□ 1.8
RETREG3-210ENST00000590541 PPARGC1BQ86YN6 1023 aaKnown RBP26.32■■□□□ 1.8
RETREG3-210ENST00000590541 GJD4Q96KN9 370 aaPredicted RBP26.31■■□□□ 1.8
RETREG3-210ENST00000590541 NAIPQ13075 1403 aa26.31■■□□□ 1.8
RETREG3-210ENST00000590541 XPCQ01831 940 aaPredicted RBP26.3■■□□□ 1.8
RETREG3-210ENST00000590541 PPLO60437 1756 aa26.3■■□□□ 1.8
RETREG3-210ENST00000590541 FOXO3O43524 673 aa26.29■■□□□ 1.8
RETREG3-210ENST00000590541 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.25■■□□□ 1.79
RETREG3-210ENST00000590541 GLI3P10071 1580 aa26.24■■□□□ 1.79
RETREG3-210ENST00000590541 SLIT2O94813 1529 aa26.23■■□□□ 1.79
RETREG3-210ENST00000590541 LRPPRCP42704 1394 aaKnown RBP26.22■■□□□ 1.79
RETREG3-210ENST00000590541 NUTM2FA1L443 756 aa26.22■■□□□ 1.79
RETREG3-210ENST00000590541 UNC5CLQ8IV45 518 aa26.22■■□□□ 1.79
RETREG3-210ENST00000590541 RALGAPBQ86X10 1494 aa26.22■■□□□ 1.79
RETREG3-210ENST00000590541 WAPLQ7Z5K2 1190 aa26.21■■□□□ 1.79
RETREG3-210ENST00000590541 TECPR2O15040 1411 aa26.2■■□□□ 1.78
RETREG3-210ENST00000590541 BLMP54132 1417 aaPredicted RBP26.2■■□□□ 1.78
RETREG3-210ENST00000590541 RRBP1Q9P2E9 1410 aaKnown RBP26.2■■□□□ 1.78
RETREG3-210ENST00000590541 ADGRF5Q8IZF2 1346 aa26.19■■□□□ 1.78
RETREG3-210ENST00000590541 SPATA31A3Q5VYP0 1347 aa26.18■■□□□ 1.78
RETREG3-210ENST00000590541 SLC4A1APQ9BWU0 796 aaKnown RBP26.18■■□□□ 1.78
RETREG3-210ENST00000590541 STK26Q9P289 416 aa26.17■■□□□ 1.78
RETREG3-210ENST00000590541 PLEKHH1Q9ULM0 1364 aa26.16■■□□□ 1.78
RETREG3-210ENST00000590541 DEFB132Q7Z7B7 95 aa26.15■■□□□ 1.78
RETREG3-210ENST00000590541 USP32Q8NFA0 1604 aa26.14■■□□□ 1.78
RETREG3-210ENST00000590541 BRWD3Q6RI45 1802 aa26.14■■□□□ 1.78
RETREG3-210ENST00000590541 ABCC11Q96J66 1382 aa26.13■■□□□ 1.77
RETREG3-210ENST00000590541 FMN2Q9NZ56 1722 aa26.13■■□□□ 1.77
RETREG3-210ENST00000590541 CCDC144AA2RUR9 1427 aa26.12■■□□□ 1.77
RETREG3-210ENST00000590541 KIF1AQ12756 1690 aa26.12■■□□□ 1.77
RETREG3-210ENST00000590541 KNDC1Q76NI1 1749 aa26.11■■□□□ 1.77
RETREG3-210ENST00000590541 TMEM132EQ6IEE7 984 aa26.11■■□□□ 1.77
RETREG3-210ENST00000590541 KRT28Q7Z3Y7 464 aa26.1■■□□□ 1.77
RETREG3-210ENST00000590541 SEPT12Q8IYM1 358 aa26.1■■□□□ 1.77
RETREG3-210ENST00000590541 SPATA31E1Q6ZUB1 1445 aa26.08■■□□□ 1.77
RETREG3-210ENST00000590541 RGL3Q3MIN7 710 aa26.08■■□□□ 1.77
RETREG3-210ENST00000590541 IFT172Q9UG01 1749 aa26.08■■□□□ 1.76
RETREG3-210ENST00000590541 VPS72Q15906 364 aa26.07■■□□□ 1.76
RETREG3-210ENST00000590541 ONECUT3O60422 494 aaPredicted RBP26.06■■□□□ 1.76
RETREG3-210ENST00000590541 ANKRD30BQ9BXX2 1392 aa26.06■■□□□ 1.76
RETREG3-210ENST00000590541 TNS3Q68CZ2 1445 aa26.05■■□□□ 1.76
RETREG3-210ENST00000590541 SF3B2Q13435 895 aaKnown RBP26.05■■□□□ 1.76
RETREG3-210ENST00000590541 CABLES1Q8TDN4 633 aa26.05■■□□□ 1.76
RETREG3-210ENST00000590541 PIK3C2GO75747 1445 aa26.05■■□□□ 1.76
RETREG3-210ENST00000590541 YTHDC2Q9H6S0 1430 aaKnown RBP26.05■■□□□ 1.76
RETREG3-210ENST00000590541 LRP5O75197 1615 aa26.03■■□□□ 1.76
RETREG3-210ENST00000590541 PLCH1Q4KWH8 1693 aa26.03■■□□□ 1.76
RETREG3-210ENST00000590541 HAP1P54257 671 aaPredicted RBP26.03■■□□□ 1.76
RETREG3-210ENST00000590541 NWD2Q9ULI1 1742 aa26.02■■□□□ 1.76
RETREG3-210ENST00000590541 PHF8Q9UPP1 1060 aa26.02■■□□□ 1.76
RETREG3-210ENST00000590541 RGPD8O14715 1765 aaPredicted RBP26.02■■□□□ 1.76
RETREG3-210ENST00000590541 KRT27Q7Z3Y8 459 aa26.01■■□□□ 1.75
RETREG3-210ENST00000590541 PSME1Q06323 249 aa26■■□□□ 1.75
RETREG3-210ENST00000590541 SIRT1Q96EB6 747 aa26■■□□□ 1.75
RETREG3-210ENST00000590541 ABCA3Q99758 1704 aa26■■□□□ 1.75
RETREG3-210ENST00000590541 PLEKHG5O94827 1062 aa25.99■■□□□ 1.75
RETREG3-210ENST00000590541 CCDC9Q9Y3X0 531 aaKnown RBP25.99■■□□□ 1.75
RETREG3-210ENST00000590541 SBNO1A3KN83 1393 aa25.98■■□□□ 1.75
RETREG3-210ENST00000590541 NRXN1Q9ULB1 1477 aa25.98■■□□□ 1.75
RETREG3-210ENST00000590541 FAM83GA6ND36 823 aa25.95■■□□□ 1.74
RETREG3-210ENST00000590541 LMOD2Q6P5Q4 547 aa25.94■■□□□ 1.74
RETREG3-210ENST00000590541 C14orf93Q9H972 538 aaKnown RBP25.94■■□□□ 1.74
RETREG3-210ENST00000590541 ARHGEF10O15013 1369 aa25.94■■□□□ 1.74
RETREG3-210ENST00000590541 PSDA5PKW4 1024 aaPredicted RBP25.93■■□□□ 1.74
RETREG3-210ENST00000590541 BAG6P46379 1132 aa25.92■■□□□ 1.74
RETREG3-210ENST00000590541 HRCP23327 699 aa25.91■■□□□ 1.74
RETREG3-210ENST00000590541 MPHOSPH9Q99550 1183 aa25.91■■□□□ 1.74
RETREG3-210ENST00000590541 NRAPQ86VF7 1730 aa25.91■■□□□ 1.74
RETREG3-210ENST00000590541 A0A0G2JS52 829 aa25.89■■□□□ 1.74
RETREG3-210ENST00000590541 MYT1Q01538 1121 aa25.89■■□□□ 1.74
RETREG3-210ENST00000590541 FAM98CQ17RN3 349 aaKnown RBP25.89■■□□□ 1.74
RETREG3-210ENST00000590541 CFAP70Q5T0N1 1121 aa25.89■■□□□ 1.74
RETREG3-210ENST00000590541 DHX57Q6P158 1386 aaKnown RBP25.88■■□□□ 1.73
RETREG3-210ENST00000590541 SAFB2Q14151 953 aaKnown RBP eCLIP25.88■■□□□ 1.73
RETREG3-210ENST00000590541 PMFBP1Q8TBY8 1022 aa25.88■■□□□ 1.73
RETREG3-210ENST00000590541 PRAM1Q96QH2 718 aa25.88■■□□□ 1.73
RETREG3-210ENST00000590541 BTG4Q9NY30 223 aa25.87■■□□□ 1.73
RETREG3-210ENST00000590541 EN1Q05925 392 aaPredicted RBP25.85■■□□□ 1.73
RETREG3-210ENST00000590541 ANKARQ7Z5J8 1434 aa25.85■■□□□ 1.73
RETREG3-210ENST00000590541 TRPM3Q9HCF6 1732 aaPredicted RBP25.85■■□□□ 1.73
RETREG3-210ENST00000590541 COL14A1Q05707 1796 aaKnown RBP25.82■■□□□ 1.72
RETREG3-210ENST00000590541 FAM182BQ5T319 152 aa25.82■■□□□ 1.72
RETREG3-210ENST00000590541 RGPD1P0DJD0 1748 aa25.82■■□□□ 1.72
RETREG3-210ENST00000590541 DLC1Q96QB1 1528 aa25.82■■□□□ 1.72
RETREG3-210ENST00000590541 ALS2Q96Q42 1657 aa25.81■■□□□ 1.72
RETREG3-210ENST00000590541 ADGRB2O60241 1585 aa25.81■■□□□ 1.72
RETREG3-210ENST00000590541 SPATA31A5Q5VU36 1347 aa25.8■■□□□ 1.72
RETREG3-210ENST00000590541 SPATA31A7Q8IWB4 1347 aa25.8■■□□□ 1.72
RETREG3-210ENST00000590541 POGKQ9P215 609 aa25.79■■□□□ 1.72
RETREG3-210ENST00000590541 R3HDM1Q15032 1099 aaKnown RBP25.78■■□□□ 1.72
RETREG3-210ENST00000590541 DISP2A7MBM2 1401 aa25.78■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms