RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 HFM1A2PYH4 1435 aa7.88□□□□□ -1.15
LIG3-210ENST00000588109 RTEL1-TNFRSF6BF6WH68 1400 aa7.88□□□□□ -1.15
LIG3-210ENST00000588109 KIF15Q9NS87 1388 aa7.88□□□□□ -1.15
LIG3-210ENST00000588109 EVI5O60447 810 aa7.88□□□□□ -1.15
LIG3-210ENST00000588109 GCC2Q8IWJ2 1684 aa7.88□□□□□ -1.15
LIG3-210ENST00000588109 KDM6BO15054 1643 aa7.88□□□□□ -1.15
LIG3-210ENST00000588109 PLXNC1O60486 1568 aa7.88□□□□□ -1.15
LIG3-210ENST00000588109 FRMPD1Q5SYB0 1578 aa7.88□□□□□ -1.15
LIG3-210ENST00000588109 NCOA1Q15788 1441 aa7.87□□□□□ -1.15
LIG3-210ENST00000588109 SETD5Q9C0A6 1442 aa7.87□□□□□ -1.15
LIG3-210ENST00000588109 SPDYE16A6NNV3 312 aaPredicted RBP7.87□□□□□ -1.15
LIG3-210ENST00000588109 KCNV2Q8TDN2 545 aa7.87□□□□□ -1.15
LIG3-210ENST00000588109 ZMYM4Q5VZL5 1548 aa7.87□□□□□ -1.15
LIG3-210ENST00000588109 MLH3Q9UHC1 1453 aa7.87□□□□□ -1.15
LIG3-210ENST00000588109 NAIPQ13075 1403 aa7.86□□□□□ -1.15
LIG3-210ENST00000588109 RAB3GAP2Q9H2M9 1393 aa7.86□□□□□ -1.15
LIG3-210ENST00000588109 DUOX2Q9NRD8 1548 aa7.86□□□□□ -1.15
LIG3-210ENST00000588109 KIDINS220Q9ULH0 1771 aa7.86□□□□□ -1.15
LIG3-210ENST00000588109 COL17A1Q9UMD9 1497 aaPredicted RBP7.86□□□□□ -1.15
LIG3-210ENST00000588109 ANKRD50Q9ULJ7 1429 aa7.86□□□□□ -1.15
LIG3-210ENST00000588109 PSDA5PKW4 1024 aaPredicted RBP7.85□□□□□ -1.15
LIG3-210ENST00000588109 FAM205CA6NFA0 338 aa7.85□□□□□ -1.15
LIG3-210ENST00000588109 ARIH1Q9Y4X5 557 aaPredicted RBP7.85□□□□□ -1.15
LIG3-210ENST00000588109 MAGI2Q86UL8 1455 aa7.85□□□□□ -1.15
LIG3-210ENST00000588109 ABCA6Q8N139 1617 aa7.85□□□□□ -1.15
LIG3-210ENST00000588109 LHX6Q9UPM6 363 aa7.84□□□□□ -1.15
LIG3-210ENST00000588109 ERBINQ96RT1 1412 aa7.84□□□□□ -1.15
LIG3-210ENST00000588109 DIP2CQ9Y2E4 1556 aa7.84□□□□□ -1.15
LIG3-210ENST00000588109 A2MP01023 1474 aa7.83□□□□□ -1.16
LIG3-210ENST00000588109 TRIM52Q96A61 297 aa7.83□□□□□ -1.16
LIG3-210ENST00000588109 ANO8Q9HCE9 1232 aaPredicted RBP7.83□□□□□ -1.16
LIG3-210ENST00000588109 YEATS2Q9ULM3 1422 aa7.83□□□□□ -1.16
LIG3-210ENST00000588109 ARHGEF40Q8TER5 1519 aa7.83□□□□□ -1.16
LIG3-210ENST00000588109 VARS2Q5ST30 1063 aaKnown RBP7.82□□□□□ -1.16
LIG3-210ENST00000588109 LCE2DQ5TA82 110 aaPredicted RBP7.82□□□□□ -1.16
LIG3-210ENST00000588109 POTEGQ6S5H5 508 aa7.82□□□□□ -1.16
LIG3-210ENST00000588109 DHX29Q7Z478 1369 aaKnown RBP7.82□□□□□ -1.16
LIG3-210ENST00000588109 ATP10AO60312 1499 aa7.81□□□□□ -1.16
LIG3-210ENST00000588109 ACIN1Q9UKV3 1341 aaKnown RBP7.81□□□□□ -1.16
LIG3-210ENST00000588109 POTEMA6NI47 508 aa7.81□□□□□ -1.16
LIG3-210ENST00000588109 KIF3BO15066 747 aa7.81□□□□□ -1.16
LIG3-210ENST00000588109 HRCP23327 699 aa7.81□□□□□ -1.16
LIG3-210ENST00000588109 PPP4R3BQ5MIZ7 849 aa7.81□□□□□ -1.16
LIG3-210ENST00000588109 EIF2AK4Q9P2K8 1649 aaKnown RBP7.81□□□□□ -1.16
LIG3-210ENST00000588109 NBR1Q14596 966 aa7.8□□□□□ -1.16
LIG3-210ENST00000588109 PDIA6Q15084 440 aa7.8□□□□□ -1.16
LIG3-210ENST00000588109 ZNF454Q8N9F8 522 aa7.8□□□□□ -1.16
LIG3-210ENST00000588109 ARID4BQ4LE39 1312 aaPredicted RBP7.79□□□□□ -1.16
LIG3-210ENST00000588109 KDM4FA0A1W2PPD8 638 aa7.79□□□□□ -1.16
LIG3-210ENST00000588109 GRXCR2A6NFK2 248 aa7.79□□□□□ -1.16
LIG3-210ENST00000588109 CCER1Q8TC90 406 aaPredicted RBP7.79□□□□□ -1.16
LIG3-210ENST00000588109 DDX12PQ92771 950 aa7.79□□□□□ -1.16
LIG3-210ENST00000588109 HS3ST6Q96QI5 342 aa7.79□□□□□ -1.16
LIG3-210ENST00000588109 NUP155O75694 1391 aa7.79□□□□□ -1.16
LIG3-210ENST00000588109 REREQ9P2R6 1566 aa7.79□□□□□ -1.16
LIG3-210ENST00000588109 GGT6Q6P531 493 aa7.78□□□□□ -1.16
LIG3-210ENST00000588109 KANK1Q14678 1352 aa7.78□□□□□ -1.16
LIG3-210ENST00000588109 UNC13BO14795 1591 aa7.78□□□□□ -1.16
LIG3-210ENST00000588109 TULP1O00294 542 aaPredicted RBP7.77□□□□□ -1.17
LIG3-210ENST00000588109 PTGER2P43116 358 aa7.77□□□□□ -1.17
LIG3-210ENST00000588109 SMYD5Q6GMV2 418 aa7.77□□□□□ -1.17
LIG3-210ENST00000588109 EPAS1Q99814 870 aa7.77□□□□□ -1.17
LIG3-210ENST00000588109 DEPDC5O75140 1603 aa7.77□□□□□ -1.17
LIG3-210ENST00000588109 RNF17Q9BXT8 1623 aaKnown RBP7.77□□□□□ -1.17
LIG3-210ENST00000588109 DHX57Q6P158 1386 aaKnown RBP7.76□□□□□ -1.17
LIG3-210ENST00000588109 BCORL1Q5H9F3 1711 aa7.76□□□□□ -1.17
LIG3-210ENST00000588109 PHF14O94880 888 aa7.76□□□□□ -1.17
LIG3-210ENST00000588109 MLECQ14165 292 aa7.76□□□□□ -1.17
LIG3-210ENST00000588109 ZDHHC16Q969W1 377 aa7.76□□□□□ -1.17
LIG3-210ENST00000588109 MPHOSPH9Q99550 1183 aa7.76□□□□□ -1.17
LIG3-210ENST00000588109 AGLP35573 1532 aa7.76□□□□□ -1.17
LIG3-210ENST00000588109 KDM5DQ9BY66 1539 aa7.76□□□□□ -1.17
LIG3-210ENST00000588109 IQGAP3Q86VI3 1631 aa7.75□□□□□ -1.17
LIG3-210ENST00000588109 PRDM15P57071 1507 aaPredicted RBP7.75□□□□□ -1.17
LIG3-210ENST00000588109 FAM135AQ9P2D6 1515 aa7.75□□□□□ -1.17
LIG3-210ENST00000588109 FOSBP53539 338 aa7.75□□□□□ -1.17
LIG3-210ENST00000588109 TYW1BQ6NUM6 668 aa7.75□□□□□ -1.17
LIG3-210ENST00000588109 ZNF687Q8N1G0 1237 aa7.75□□□□□ -1.17
LIG3-210ENST00000588109 FBXW7Q969H0 707 aa7.75□□□□□ -1.17
LIG3-210ENST00000588109 ESF1Q9H501 851 aaKnown RBP7.75□□□□□ -1.17
LIG3-210ENST00000588109 WASHC2CQ9Y4E1 1318 aa7.75□□□□□ -1.17
LIG3-210ENST00000588109 SIGLEC1Q9BZZ2 1709 aa7.75□□□□□ -1.17
LIG3-210ENST00000588109 PZPP20742 1482 aa7.75□□□□□ -1.17
LIG3-210ENST00000588109 SEMA3EO15041 775 aa7.74□□□□□ -1.17
LIG3-210ENST00000588109 MROH1Q8NDA8 1641 aa7.74□□□□□ -1.17
LIG3-210ENST00000588109 RBM33Q96EV2 1170 aaKnown RBP7.73□□□□□ -1.17
LIG3-210ENST00000588109 PCDHGA10Q9Y5H3 936 aa7.73□□□□□ -1.17
LIG3-210ENST00000588109 ZC3H13Q5T200 1668 aaKnown RBP7.73□□□□□ -1.17
LIG3-210ENST00000588109 CEP152O94986 1710 aa7.72□□□□□ -1.17
LIG3-210ENST00000588109 CDAN1Q8IWY9 1227 aa7.72□□□□□ -1.17
LIG3-210ENST00000588109 PCDH10Q9P2E7 1040 aa7.72□□□□□ -1.17
LIG3-210ENST00000588109 TET3O43151 1660 aa7.72□□□□□ -1.17
LIG3-210ENST00000588109 ABCC3O15438 1527 aa7.72□□□□□ -1.17
LIG3-210ENST00000588109 VWDEQ8N2E2 1590 aa7.71□□□□□ -1.17
LIG3-210ENST00000588109 CLTCQ00610 1675 aaKnown RBP7.71□□□□□ -1.18
LIG3-210ENST00000588109 POTEB3A0JP26 581 aa7.71□□□□□ -1.18
LIG3-210ENST00000588109 MAP3K7O43318 606 aa7.71□□□□□ -1.18
LIG3-210ENST00000588109 PBX2P40425 430 aa7.71□□□□□ -1.18
LIG3-210ENST00000588109 POTEBQ6S5H4 581 aa7.71□□□□□ -1.18
LIG3-210ENST00000588109 LMTK2Q8IWU2 1503 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms