RNA–Protein interactions for RNA: ENST00000587259.5

VMP1-204, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-204ENST00000587259 ADAMTS2O95450 1211 aa11.74□□□□□ -0.53
VMP1-204ENST00000587259 PNPLA6Q8IY17 1366 aa11.74□□□□□ -0.53
VMP1-204ENST00000587259 CLTCL1P53675 1640 aa11.74□□□□□ -0.53
VMP1-204ENST00000587259 SPHKAPQ2M3C7 1700 aa11.74□□□□□ -0.53
VMP1-204ENST00000587259 RGS12O14924 1447 aa11.73□□□□□ -0.53
VMP1-204ENST00000587259 DCCP43146 1447 aa11.73□□□□□ -0.53
VMP1-204ENST00000587259 NALCNQ8IZF0 1738 aa11.73□□□□□ -0.53
VMP1-204ENST00000587259 SETD5Q9C0A6 1442 aa11.73□□□□□ -0.53
VMP1-204ENST00000587259 NHSL1Q5SYE7 1610 aa11.72□□□□□ -0.53
VMP1-204ENST00000587259 NEXMIFQ5QGS0 1516 aa11.72□□□□□ -0.53
VMP1-204ENST00000587259 ADGRL3Q9HAR2 1447 aa11.72□□□□□ -0.53
VMP1-204ENST00000587259 ORAI2Q96SN7 254 aa11.72□□□□□ -0.53
VMP1-204ENST00000587259 QTRT2Q9H974 415 aaKnown RBP11.72□□□□□ -0.53
VMP1-204ENST00000587259 LRRC59Q96AG4 307 aaKnown RBP11.71□□□□□ -0.53
VMP1-204ENST00000587259 C1orf167Q5SNV9 1468 aa11.7□□□□□ -0.54
VMP1-204ENST00000587259 ROBO2Q9HCK4 1378 aa11.7□□□□□ -0.54
VMP1-204ENST00000587259 NGLY1Q96IV0 654 aa11.69□□□□□ -0.54
VMP1-204ENST00000587259 XPCQ01831 940 aaPredicted RBP11.68□□□□□ -0.54
VMP1-204ENST00000587259 CDK12Q9NYV4 1490 aaPredicted RBP11.68□□□□□ -0.54
VMP1-204ENST00000587259 RBM6P78332 1123 aaKnown RBP11.67□□□□□ -0.54
VMP1-204ENST00000587259 NUTM2FA1L443 756 aa11.66□□□□□ -0.54
VMP1-204ENST00000587259 USP21Q9UK80 565 aa11.65□□□□□ -0.54
VMP1-204ENST00000587259 NAIPQ13075 1403 aa11.65□□□□□ -0.54
VMP1-204ENST00000587259 SRCAPQ6ZRS2 3230 aa11.65□□□□□ -0.54
VMP1-204ENST00000587259 SOS2Q07890 1332 aaPredicted RBP11.64□□□□□ -0.55
VMP1-204ENST00000587259 KIF1BO60333 1816 aa11.63□□□□□ -0.55
VMP1-204ENST00000587259 PTCH1Q13635 1447 aa11.63□□□□□ -0.55
VMP1-204ENST00000587259 RRBP1Q9P2E9 1410 aaKnown RBP11.62□□□□□ -0.55
VMP1-204ENST00000587259 PLEKHG5O94827 1062 aa11.62□□□□□ -0.55
VMP1-204ENST00000587259 ESCO1Q5FWF5 840 aa11.62□□□□□ -0.55
VMP1-204ENST00000587259 WAPLQ7Z5K2 1190 aa11.62□□□□□ -0.55
VMP1-204ENST00000587259 STK26Q9P289 416 aa11.62□□□□□ -0.55
VMP1-204ENST00000587259 VGFO15240 615 aaPredicted RBP11.61□□□□□ -0.55
VMP1-204ENST00000587259 FOXO3O43524 673 aa11.61□□□□□ -0.55
VMP1-204ENST00000587259 ADGRF5Q8IZF2 1346 aa11.6□□□□□ -0.55
VMP1-204ENST00000587259 PLEKHH1Q9ULM0 1364 aa11.6□□□□□ -0.55
VMP1-204ENST00000587259 RGL3Q3MIN7 710 aa11.6□□□□□ -0.55
VMP1-204ENST00000587259 LAMC1P11047 1609 aa11.6□□□□□ -0.55
VMP1-204ENST00000587259 ATRNO75882 1429 aa11.6□□□□□ -0.55
VMP1-204ENST00000587259 ATAD2Q6PL18 1390 aa11.59□□□□□ -0.55
VMP1-204ENST00000587259 ZEB1P37275 1124 aaPredicted RBP11.59□□□□□ -0.55
VMP1-204ENST00000587259 TMEM132EQ6IEE7 984 aa11.59□□□□□ -0.55
VMP1-204ENST00000587259 FNBP4Q8N3X1 1017 aaPredicted RBP11.59□□□□□ -0.55
VMP1-204ENST00000587259 TRPC5Q9UL62 973 aaPredicted RBP11.59□□□□□ -0.55
VMP1-204ENST00000587259 MYOM2P54296 1465 aa11.58□□□□□ -0.56
VMP1-204ENST00000587259 BCL9LQ86UU0 1499 aa11.58□□□□□ -0.56
VMP1-204ENST00000587259 PXDNQ92626 1479 aa11.58□□□□□ -0.56
VMP1-204ENST00000587259 HRCP23327 699 aa11.58□□□□□ -0.56
VMP1-204ENST00000587259 PPLO60437 1756 aa11.58□□□□□ -0.56
VMP1-204ENST00000587259 HFM1A2PYH4 1435 aa11.57□□□□□ -0.56
VMP1-204ENST00000587259 EP400Q96L91 3159 aa11.57□□□□□ -0.56
VMP1-204ENST00000587259 COL22A1Q8NFW1 1626 aaPredicted RBP11.57□□□□□ -0.56
VMP1-204ENST00000587259 RPGRIP1LQ68CZ1 1315 aa11.56□□□□□ -0.56
VMP1-204ENST00000587259 NPHP3Q7Z494 1330 aa11.56□□□□□ -0.56
VMP1-204ENST00000587259 PRAG1Q86YV5 1406 aa11.55□□□□□ -0.56
VMP1-204ENST00000587259 CDC42BPGQ6DT37 1551 aa11.54□□□□□ -0.56
VMP1-204ENST00000587259 CABLES1Q8TDN4 633 aa11.54□□□□□ -0.56
VMP1-204ENST00000587259 GJD4Q96KN9 370 aaPredicted RBP11.54□□□□□ -0.56
VMP1-204ENST00000587259 RBM42Q9BTD8 480 aaKnown RBP11.53□□□□□ -0.56
VMP1-204ENST00000587259 SAFB2Q14151 953 aaKnown RBP eCLIP11.52□□□□□ -0.57
VMP1-204ENST00000587259 DEFB132Q7Z7B7 95 aa11.52□□□□□ -0.57
VMP1-204ENST00000587259 ZRANB1Q9UGI0 708 aa11.52□□□□□ -0.57
VMP1-204ENST00000587259 GLI3P10071 1580 aa11.52□□□□□ -0.57
VMP1-204ENST00000587259 LRPPRCP42704 1394 aaKnown RBP11.52□□□□□ -0.57
VMP1-204ENST00000587259 SPATA31E1Q6ZUB1 1445 aa11.52□□□□□ -0.57
VMP1-204ENST00000587259 RALGAPBQ86X10 1494 aa11.51□□□□□ -0.57
VMP1-204ENST00000587259 ATXN8OSP0DMR3 200 aa11.51□□□□□ -0.57
VMP1-204ENST00000587259 SPATA31A3Q5VYP0 1347 aa11.51□□□□□ -0.57
VMP1-204ENST00000587259 MARF1Q9Y4F3 1742 aaKnown RBP11.51□□□□□ -0.57
VMP1-204ENST00000587259 CCDC144AA2RUR9 1427 aa11.51□□□□□ -0.57
VMP1-204ENST00000587259 KRT28Q7Z3Y7 464 aa11.5□□□□□ -0.57
VMP1-204ENST00000587259 UNC5CLQ8IV45 518 aa11.5□□□□□ -0.57
VMP1-204ENST00000587259 TECPR2O15040 1411 aa11.5□□□□□ -0.57
VMP1-204ENST00000587259 LMOD2Q6P5Q4 547 aa11.49□□□□□ -0.57
VMP1-204ENST00000587259 MPHOSPH9Q99550 1183 aa11.49□□□□□ -0.57
VMP1-204ENST00000587259 YTHDC2Q9H6S0 1430 aaKnown RBP11.49□□□□□ -0.57
VMP1-204ENST00000587259 SLIT2O94813 1529 aa11.49□□□□□ -0.57
VMP1-204ENST00000587259 FMN2Q9NZ56 1722 aa11.49□□□□□ -0.57
VMP1-204ENST00000587259 CFAP70Q5T0N1 1121 aa11.48□□□□□ -0.57
VMP1-204ENST00000587259 CCDC9Q9Y3X0 531 aaKnown RBP11.48□□□□□ -0.57
VMP1-204ENST00000587259 ABCC11Q96J66 1382 aa11.48□□□□□ -0.57
VMP1-204ENST00000587259 PIK3C2GO75747 1445 aa11.48□□□□□ -0.57
VMP1-204ENST00000587259 IFT172Q9UG01 1749 aa11.48□□□□□ -0.57
VMP1-204ENST00000587259 RGPD8O14715 1765 aaPredicted RBP11.48□□□□□ -0.57
VMP1-204ENST00000587259 BRWD3Q6RI45 1802 aa11.48□□□□□ -0.57
VMP1-204ENST00000587259 USP32Q8NFA0 1604 aa11.47□□□□□ -0.57
VMP1-204ENST00000587259 HAP1P54257 671 aaPredicted RBP11.47□□□□□ -0.57
VMP1-204ENST00000587259 SEPT12Q8IYM1 358 aa11.47□□□□□ -0.57
VMP1-204ENST00000587259 PMFBP1Q8TBY8 1022 aa11.47□□□□□ -0.57
VMP1-204ENST00000587259 PHF8Q9UPP1 1060 aa11.47□□□□□ -0.57
VMP1-204ENST00000587259 ANKRD30BQ9BXX2 1392 aa11.46□□□□□ -0.57
VMP1-204ENST00000587259 KNDC1Q76NI1 1749 aa11.46□□□□□ -0.58
VMP1-204ENST00000587259 TNS3Q68CZ2 1445 aa11.45□□□□□ -0.58
VMP1-204ENST00000587259 FAM182BQ5T319 152 aa11.45□□□□□ -0.58
VMP1-204ENST00000587259 PRAM1Q96QH2 718 aa11.45□□□□□ -0.58
VMP1-204ENST00000587259 HIRIP3Q9BW71 556 aaPredicted RBP11.45□□□□□ -0.58
VMP1-204ENST00000587259 ZBTB12Q9Y330 459 aaPredicted RBP11.45□□□□□ -0.58
VMP1-204ENST00000587259 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.45□□□□□ -0.58
VMP1-204ENST00000587259 BLMP54132 1417 aaPredicted RBP11.44□□□□□ -0.58
VMP1-204ENST00000587259 A0A0G2JS52 829 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms