RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 ADGRF5Q8IZF2 1346 aa17.77■□□□□ 0.44
LIG3-209ENST00000586435 FOXD1Q16676 465 aa17.77■□□□□ 0.44
LIG3-209ENST00000586435 RGS12O14924 1447 aa17.77■□□□□ 0.44
LIG3-209ENST00000586435 PIK3C2GO75747 1445 aa17.77■□□□□ 0.44
LIG3-209ENST00000586435 LRPPRCP42704 1394 aaKnown RBP17.77■□□□□ 0.43
LIG3-209ENST00000586435 MARF1Q9Y4F3 1742 aaKnown RBP17.76■□□□□ 0.43
LIG3-209ENST00000586435 RBM6P78332 1123 aaKnown RBP17.76■□□□□ 0.43
LIG3-209ENST00000586435 MPHOSPH9Q99550 1183 aa17.75■□□□□ 0.43
LIG3-209ENST00000586435 ABCC11Q96J66 1382 aa17.75■□□□□ 0.43
LIG3-209ENST00000586435 FMN2Q9NZ56 1722 aa17.75■□□□□ 0.43
LIG3-209ENST00000586435 PXDNQ92626 1479 aa17.75■□□□□ 0.43
LIG3-209ENST00000586435 NPHP3Q7Z494 1330 aa17.74■□□□□ 0.43
LIG3-209ENST00000586435 ACIN1Q9UKV3 1341 aaKnown RBP17.74■□□□□ 0.43
LIG3-209ENST00000586435 QTRT2Q9H974 415 aaKnown RBP17.74■□□□□ 0.43
LIG3-209ENST00000586435 MYOM2P54296 1465 aa17.74■□□□□ 0.43
LIG3-209ENST00000586435 KIF1AQ12756 1690 aa17.72■□□□□ 0.43
LIG3-209ENST00000586435 NGLY1Q96IV0 654 aa17.72■□□□□ 0.43
LIG3-209ENST00000586435 ADAMTS2O95450 1211 aa17.71■□□□□ 0.43
LIG3-209ENST00000586435 RGL3Q3MIN7 710 aa17.71■□□□□ 0.43
LIG3-209ENST00000586435 NRXN1Q9ULB1 1477 aa17.7■□□□□ 0.42
LIG3-209ENST00000586435 ESCO1Q5FWF5 840 aa17.7■□□□□ 0.42
LIG3-209ENST00000586435 FNBP4Q8N3X1 1017 aaPredicted RBP17.7■□□□□ 0.42
LIG3-209ENST00000586435 YTHDC2Q9H6S0 1430 aaKnown RBP17.7■□□□□ 0.42
LIG3-209ENST00000586435 ATRNO75882 1429 aa17.68■□□□□ 0.42
LIG3-209ENST00000586435 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.68■□□□□ 0.42
LIG3-209ENST00000586435 USP21Q9UK80 565 aa17.68■□□□□ 0.42
LIG3-209ENST00000586435 TRPC5Q9UL62 973 aaPredicted RBP17.68■□□□□ 0.42
LIG3-209ENST00000586435 PLEKHH1Q9ULM0 1364 aa17.67■□□□□ 0.42
LIG3-209ENST00000586435 WAPLQ7Z5K2 1190 aa17.67■□□□□ 0.42
LIG3-209ENST00000586435 SIRT1Q96EB6 747 aa17.67■□□□□ 0.42
LIG3-209ENST00000586435 STK26Q9P289 416 aa17.67■□□□□ 0.42
LIG3-209ENST00000586435 RGPD8O14715 1765 aaPredicted RBP17.66■□□□□ 0.42
LIG3-209ENST00000586435 FOXO3O43524 673 aa17.65■□□□□ 0.42
LIG3-209ENST00000586435 TMEM132EQ6IEE7 984 aa17.65■□□□□ 0.42
LIG3-209ENST00000586435 C14orf93Q9H972 538 aaKnown RBP17.64■□□□□ 0.41
LIG3-209ENST00000586435 ATAD2Q6PL18 1390 aa17.64■□□□□ 0.41
LIG3-209ENST00000586435 BCL9LQ86UU0 1499 aa17.63■□□□□ 0.41
LIG3-209ENST00000586435 DLC1Q96QB1 1528 aa17.62■□□□□ 0.41
LIG3-209ENST00000586435 DHX57Q6P158 1386 aaKnown RBP17.62■□□□□ 0.41
LIG3-209ENST00000586435 USP32Q8NFA0 1604 aa17.61■□□□□ 0.41
LIG3-209ENST00000586435 NUTM2FA1L443 756 aa17.61■□□□□ 0.41
LIG3-209ENST00000586435 XPCQ01831 940 aaPredicted RBP17.61■□□□□ 0.41
LIG3-209ENST00000586435 SPATA31A3Q5VYP0 1347 aa17.61■□□□□ 0.41
LIG3-209ENST00000586435 ADGRB2O60241 1585 aa17.61■□□□□ 0.41
LIG3-209ENST00000586435 ABCA3Q99758 1704 aa17.59■□□□□ 0.41
LIG3-209ENST00000586435 SLIT2O94813 1529 aa17.59■□□□□ 0.41
LIG3-209ENST00000586435 ADGRB1O14514 1584 aa17.58■□□□□ 0.41
LIG3-209ENST00000586435 TNS3Q68CZ2 1445 aa17.58■□□□□ 0.41
LIG3-209ENST00000586435 RAB3GAP2Q9H2M9 1393 aa17.58■□□□□ 0.4
LIG3-209ENST00000586435 CFAP70Q5T0N1 1121 aa17.58■□□□□ 0.4
LIG3-209ENST00000586435 ANKARQ7Z5J8 1434 aa17.56■□□□□ 0.4
LIG3-209ENST00000586435 NWD2Q9ULI1 1742 aa17.56■□□□□ 0.4
LIG3-209ENST00000586435 GLI3P10071 1580 aa17.56■□□□□ 0.4
LIG3-209ENST00000586435 SBNO1A3KN83 1393 aa17.55■□□□□ 0.4
LIG3-209ENST00000586435 PLCH1Q4KWH8 1693 aa17.55■□□□□ 0.4
LIG3-209ENST00000586435 KRT28Q7Z3Y7 464 aa17.55■□□□□ 0.4
LIG3-209ENST00000586435 GJD4Q96KN9 370 aaPredicted RBP17.55■□□□□ 0.4
LIG3-209ENST00000586435 PHF8Q9UPP1 1060 aa17.55■□□□□ 0.4
LIG3-209ENST00000586435 RALGAPBQ86X10 1494 aa17.53■□□□□ 0.4
LIG3-209ENST00000586435 PSME1Q06323 249 aa17.53■□□□□ 0.4
LIG3-209ENST00000586435 UNC5CLQ8IV45 518 aa17.53■□□□□ 0.4
LIG3-209ENST00000586435 PRAM1Q96QH2 718 aa17.53■□□□□ 0.4
LIG3-209ENST00000586435 TRPM3Q9HCF6 1732 aaPredicted RBP17.52■□□□□ 0.4
LIG3-209ENST00000586435 EP400Q96L91 3159 aa17.52■□□□□ 0.4
LIG3-209ENST00000586435 ARHGEF10O15013 1369 aa17.52■□□□□ 0.39
LIG3-209ENST00000586435 BRWD3Q6RI45 1802 aa17.51■□□□□ 0.39
LIG3-209ENST00000586435 CCDC125Q86Z20 511 aa17.51■□□□□ 0.39
LIG3-209ENST00000586435 ALS2Q96Q42 1657 aa17.5■□□□□ 0.39
LIG3-209ENST00000586435 EIF3AQ14152 1382 aaKnown RBP17.5■□□□□ 0.39
LIG3-209ENST00000586435 TULP4Q9NRJ4 1543 aa17.49■□□□□ 0.39
LIG3-209ENST00000586435 SAFB2Q14151 953 aaKnown RBP eCLIP17.49■□□□□ 0.39
LIG3-209ENST00000586435 STAC3Q96MF2 364 aa17.49■□□□□ 0.39
LIG3-209ENST00000586435 POGKQ9P215 609 aa17.49■□□□□ 0.39
LIG3-209ENST00000586435 ARHGEF28Q8N1W1 1705 aaKnown RBP17.48■□□□□ 0.39
LIG3-209ENST00000586435 NRAPQ86VF7 1730 aa17.47■□□□□ 0.39
LIG3-209ENST00000586435 ITSN1Q15811 1721 aa17.47■□□□□ 0.39
LIG3-209ENST00000586435 HRCP23327 699 aa17.46■□□□□ 0.39
LIG3-209ENST00000586435 HAP1P54257 671 aaPredicted RBP17.46■□□□□ 0.39
LIG3-209ENST00000586435 VPS72Q15906 364 aa17.46■□□□□ 0.39
LIG3-209ENST00000586435 CRYBG1Q9Y4K1 1723 aa17.46■□□□□ 0.39
LIG3-209ENST00000586435 BLMP54132 1417 aaPredicted RBP17.45■□□□□ 0.38
LIG3-209ENST00000586435 COL14A1Q05707 1796 aaKnown RBP17.44■□□□□ 0.38
LIG3-209ENST00000586435 CABLES1Q8TDN4 633 aa17.44■□□□□ 0.38
LIG3-209ENST00000586435 TRAK1Q9UPV9 953 aa17.44■□□□□ 0.38
LIG3-209ENST00000586435 PMFBP1Q8TBY8 1022 aa17.43■□□□□ 0.38
LIG3-209ENST00000586435 DCAF11Q8TEB1 546 aa17.43■□□□□ 0.38
LIG3-209ENST00000586435 PRR36Q9H6K5 1346 aa17.43■□□□□ 0.38
LIG3-209ENST00000586435 GPRASP1Q5JY77 1395 aa17.42■□□□□ 0.38
LIG3-209ENST00000586435 KIAA1210Q9ULL0 1709 aa17.42■□□□□ 0.38
LIG3-209ENST00000586435 ONECUT3O60422 494 aaPredicted RBP17.42■□□□□ 0.38
LIG3-209ENST00000586435 MINK1Q8N4C8 1332 aaPredicted RBP17.42■□□□□ 0.38
LIG3-209ENST00000586435 WASLO00401 505 aaPredicted RBP17.41■□□□□ 0.38
LIG3-209ENST00000586435 LMOD2Q6P5Q4 547 aa17.41■□□□□ 0.38
LIG3-209ENST00000586435 HIRIP3Q9BW71 556 aaPredicted RBP17.41■□□□□ 0.38
LIG3-209ENST00000586435 ZRANB1Q9UGI0 708 aa17.41■□□□□ 0.38
LIG3-209ENST00000586435 ATP7BP35670 1465 aa17.4■□□□□ 0.38
LIG3-209ENST00000586435 SEPT12Q8IYM1 358 aa17.4■□□□□ 0.38
LIG3-209ENST00000586435 KDM2AQ9Y2K7 1162 aa17.4■□□□□ 0.38
LIG3-209ENST00000586435 FAM83GA6ND36 823 aa17.39■□□□□ 0.37
LIG3-209ENST00000586435 TOPAZ1Q8N9V7 1692 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms