RNA–Protein interactions for RNA: ENST00000585799.5

SMARCA4-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,842 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-208ENST00000585799 PTPRTO14522 1441 aa16.02■□□□□ 0.15
SMARCA4-208ENST00000585799 UNC13BO14795 1591 aa16.02■□□□□ 0.15
SMARCA4-208ENST00000585799 NCKAP5LQ9HCH0 1330 aa16.01■□□□□ 0.15
SMARCA4-208ENST00000585799 RRS1Q15050 365 aaKnown RBP16■□□□□ 0.15
SMARCA4-208ENST00000585799 SLFN5Q08AF3 891 aa16■□□□□ 0.15
SMARCA4-208ENST00000585799 ITPRIPQ8IWB1 547 aa16■□□□□ 0.15
SMARCA4-208ENST00000585799 PNNQ9H307 717 aaKnown RBP16■□□□□ 0.15
SMARCA4-208ENST00000585799 WWC1Q8IX03 1113 aa16■□□□□ 0.15
SMARCA4-208ENST00000585799 LRPPRCP42704 1394 aaKnown RBP16■□□□□ 0.15
SMARCA4-208ENST00000585799 MYT1Q01538 1121 aa15.99■□□□□ 0.15
SMARCA4-208ENST00000585799 TRPM2O94759 1503 aa15.99■□□□□ 0.15
SMARCA4-208ENST00000585799 DUSP27Q5VZP5 1158 aa15.99■□□□□ 0.15
SMARCA4-208ENST00000585799 SPINK5Q9NQ38 1064 aaPredicted RBP15.99■□□□□ 0.15
SMARCA4-208ENST00000585799 PLEKHH1Q9ULM0 1364 aa15.99■□□□□ 0.15
SMARCA4-208ENST00000585799 NME9Q86XW9 330 aa15.98■□□□□ 0.15
SMARCA4-208ENST00000585799 PRKAR2BP31323 418 aa15.98■□□□□ 0.15
SMARCA4-208ENST00000585799 ASXL1Q8IXJ9 1541 aa15.98■□□□□ 0.15
SMARCA4-208ENST00000585799 NUDT16Q96DE0 195 aaKnown RBP15.98■□□□□ 0.15
SMARCA4-208ENST00000585799 CLTCL1P53675 1640 aa15.97■□□□□ 0.15
SMARCA4-208ENST00000585799 NEO1Q92859 1461 aa15.97■□□□□ 0.15
SMARCA4-208ENST00000585799 ZRANB1Q9UGI0 708 aa15.97■□□□□ 0.15
SMARCA4-208ENST00000585799 MLH3Q9UHC1 1453 aa15.97■□□□□ 0.15
SMARCA4-208ENST00000585799 TSPOAP1O95153 1857 aa15.96■□□□□ 0.15
SMARCA4-208ENST00000585799 PDE4AP27815 886 aa15.96■□□□□ 0.15
SMARCA4-208ENST00000585799 NOP58Q9Y2X3 529 aaKnown RBP15.96■□□□□ 0.15
SMARCA4-208ENST00000585799 AMPHP49418 695 aa15.96■□□□□ 0.14
SMARCA4-208ENST00000585799 THUMPD2Q9BTF0 503 aaKnown RBP15.96■□□□□ 0.14
SMARCA4-208ENST00000585799 DMRT2Q9Y5R5 561 aa15.96■□□□□ 0.14
SMARCA4-208ENST00000585799 ABCA9Q8IUA7 1624 aa15.95■□□□□ 0.14
SMARCA4-208ENST00000585799 EMILIN1Q9Y6C2 1016 aa15.95■□□□□ 0.14
SMARCA4-208ENST00000585799 FYB1O15117 783 aa15.95■□□□□ 0.14
SMARCA4-208ENST00000585799 EXOSC9Q06265 439 aaKnown RBP15.95■□□□□ 0.14
SMARCA4-208ENST00000585799 ATAD2Q6PL18 1390 aa15.95■□□□□ 0.14
SMARCA4-208ENST00000585799 E9PCH4 1651 aa15.95■□□□□ 0.14
SMARCA4-208ENST00000585799 TRPM1Q7Z4N2 1603 aa15.94■□□□□ 0.14
SMARCA4-208ENST00000585799 ARAP3Q8WWN8 1544 aa15.94■□□□□ 0.14
SMARCA4-208ENST00000585799 CCDC61Q9Y6R9 512 aa15.93■□□□□ 0.14
SMARCA4-208ENST00000585799 WASLO00401 505 aaPredicted RBP15.92■□□□□ 0.14
SMARCA4-208ENST00000585799 UPF2Q9HAU5 1272 aaKnown RBP15.92■□□□□ 0.14
SMARCA4-208ENST00000585799 ZMYM3Q14202 1370 aa15.91■□□□□ 0.14
SMARCA4-208ENST00000585799 RIMBP3CA6NJZ7 1639 aa15.91■□□□□ 0.14
SMARCA4-208ENST00000585799 RIMBP3BA6NNM3 1639 aa15.91■□□□□ 0.14
SMARCA4-208ENST00000585799 RIMBP3Q9UFD9 1639 aa15.91■□□□□ 0.14
SMARCA4-208ENST00000585799 APBB1O00213 710 aa15.91■□□□□ 0.14
SMARCA4-208ENST00000585799 RIMS2Q9UQ26 1411 aa15.91■□□□□ 0.14
SMARCA4-208ENST00000585799 ERVK-7P63135 1459 aa15.91■□□□□ 0.14
SMARCA4-208ENST00000585799 TET3O43151 1660 aa15.9■□□□□ 0.14
SMARCA4-208ENST00000585799 CENPQQ7L2Z9 268 aaPredicted RBP15.9■□□□□ 0.14
SMARCA4-208ENST00000585799 RTF1Q92541 710 aaKnown RBP15.9■□□□□ 0.14
SMARCA4-208ENST00000585799 HECW2Q9P2P5 1572 aa15.89■□□□□ 0.13
SMARCA4-208ENST00000585799 A0A1W2PP64 1363 aa15.89■□□□□ 0.13
SMARCA4-208ENST00000585799 TMPOP42166 694 aaKnown RBP15.89■□□□□ 0.13
SMARCA4-208ENST00000585799 ZKSCAN2Q63HK3 967 aa15.89■□□□□ 0.13
SMARCA4-208ENST00000585799 EFCAB6Q5THR3 1501 aa15.89■□□□□ 0.13
SMARCA4-208ENST00000585799 SLC4A3P48751 1232 aa15.89■□□□□ 0.13
SMARCA4-208ENST00000585799 NLRP6P59044 892 aa15.89■□□□□ 0.13
SMARCA4-208ENST00000585799 TNRQ92752 1358 aa15.88■□□□□ 0.13
SMARCA4-208ENST00000585799 THEMISQ8N1K5 641 aaPredicted RBP15.88■□□□□ 0.13
SMARCA4-208ENST00000585799 AMOTL2Q9Y2J4 779 aa15.88■□□□□ 0.13
SMARCA4-208ENST00000585799 ANKRD36BQ8N2N9 1353 aa15.88■□□□□ 0.13
SMARCA4-208ENST00000585799 NGEFQ8N5V2 710 aa15.88■□□□□ 0.13
SMARCA4-208ENST00000585799 YTHDC2Q9H6S0 1430 aaKnown RBP15.88■□□□□ 0.13
SMARCA4-208ENST00000585799 ABCC3O15438 1527 aa15.87■□□□□ 0.13
SMARCA4-208ENST00000585799 IPO8O15397 1037 aaKnown RBP15.87■□□□□ 0.13
SMARCA4-208ENST00000585799 DCTN1Q14203 1278 aa15.87■□□□□ 0.13
SMARCA4-208ENST00000585799 SULT6B1Q6IMI4 303 aa15.87■□□□□ 0.13
SMARCA4-208ENST00000585799 MS4A1P11836 297 aa15.86■□□□□ 0.13
SMARCA4-208ENST00000585799 PPP6R1Q9UPN7 881 aa15.86■□□□□ 0.13
SMARCA4-208ENST00000585799 TNNQ9UQP3 1299 aa15.86■□□□□ 0.13
SMARCA4-208ENST00000585799 SPHKAPQ2M3C7 1700 aa15.86■□□□□ 0.13
SMARCA4-208ENST00000585799 DZIP1LQ8IYY4 767 aaKnown RBP15.86■□□□□ 0.13
SMARCA4-208ENST00000585799 NECTIN2Q92692 538 aa15.85■□□□□ 0.13
SMARCA4-208ENST00000585799 RWDD1Q9H446 243 aaPredicted RBP15.85■□□□□ 0.13
SMARCA4-208ENST00000585799 INO80Q9ULG1 1556 aaPredicted RBP15.85■□□□□ 0.13
SMARCA4-208ENST00000585799 KIDINS220Q9ULH0 1771 aa15.85■□□□□ 0.13
SMARCA4-208ENST00000585799 CEP152O94986 1710 aa15.84■□□□□ 0.13
SMARCA4-208ENST00000585799 RNF17Q9BXT8 1623 aaKnown RBP15.84■□□□□ 0.13
SMARCA4-208ENST00000585799 PIK3C2GO75747 1445 aa15.84■□□□□ 0.13
SMARCA4-208ENST00000585799 XPCQ01831 940 aaPredicted RBP15.84■□□□□ 0.13
SMARCA4-208ENST00000585799 IPO9Q96P70 1041 aaKnown RBP15.84■□□□□ 0.13
SMARCA4-208ENST00000585799 WDR63Q8IWG1 891 aa15.83■□□□□ 0.12
SMARCA4-208ENST00000585799 MSH5O43196 834 aa15.83■□□□□ 0.12
SMARCA4-208ENST00000585799 CALD1Q05682 793 aaKnown RBP15.83■□□□□ 0.12
SMARCA4-208ENST00000585799 MADDQ8WXG6 1647 aa15.83■□□□□ 0.12
SMARCA4-208ENST00000585799 KIF1BO60333 1816 aa15.82■□□□□ 0.12
SMARCA4-208ENST00000585799 RARSP54136 660 aaKnown RBP15.82■□□□□ 0.12
SMARCA4-208ENST00000585799 SLC4A10Q6U841 1118 aa15.82■□□□□ 0.12
SMARCA4-208ENST00000585799 FANCIQ9NVI1 1328 aa15.82■□□□□ 0.12
SMARCA4-208ENST00000585799 MYOM2P54296 1465 aa15.82■□□□□ 0.12
SMARCA4-208ENST00000585799 ABTB2Q8N961 1025 aa15.81■□□□□ 0.12
SMARCA4-208ENST00000585799 PPRC1Q5VV67 1664 aaKnown RBP15.81■□□□□ 0.12
SMARCA4-208ENST00000585799 SPRYD3Q8NCJ5 442 aa15.81■□□□□ 0.12
SMARCA4-208ENST00000585799 CFAP74Q9C0B2 1584 aa15.81■□□□□ 0.12
SMARCA4-208ENST00000585799 POLR3AO14802 1390 aaPredicted RBP15.81■□□□□ 0.12
SMARCA4-208ENST00000585799 LTKP29376 864 aa15.81■□□□□ 0.12
SMARCA4-208ENST00000585799 PSME1Q06323 249 aa15.81■□□□□ 0.12
SMARCA4-208ENST00000585799 NOB1Q9ULX3 412 aaKnown RBP15.81■□□□□ 0.12
SMARCA4-208ENST00000585799 POLKQ9UBT6 870 aa15.8■□□□□ 0.12
SMARCA4-208ENST00000585799 HAP1P54257 671 aaPredicted RBP15.8■□□□□ 0.12
SMARCA4-208ENST00000585799 ZNF692Q9BU19 519 aaPredicted RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms