RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-222ENST00000584908 NEUROD1Q13562 356 aa23.48■■□□□ 1.35
ERBB2-222ENST00000584908 PCGF6Q9BYE7 350 aa23.48■■□□□ 1.35
ERBB2-222ENST00000584908 ARHGEF28Q8N1W1 1705 aaKnown RBP23.47■■□□□ 1.35
ERBB2-222ENST00000584908 BRINP3Q76B58 766 aa23.47■■□□□ 1.35
ERBB2-222ENST00000584908 COL16A1Q07092 1604 aaPredicted RBP23.46■■□□□ 1.35
ERBB2-222ENST00000584908 NHSL1Q5SYE7 1610 aa23.46■■□□□ 1.35
ERBB2-222ENST00000584908 FMN2Q9NZ56 1722 aa23.45■■□□□ 1.34
ERBB2-222ENST00000584908 ADGRB2O60241 1585 aa23.45■■□□□ 1.34
ERBB2-222ENST00000584908 PRAM1Q96QH2 718 aa23.44■■□□□ 1.34
ERBB2-222ENST00000584908 TRPM1Q7Z4N2 1603 aa23.44■■□□□ 1.34
ERBB2-222ENST00000584908 TRAK1Q9UPV9 953 aa23.42■■□□□ 1.34
ERBB2-222ENST00000584908 NBPF1Q3BBV0 1214 aa23.4■■□□□ 1.34
ERBB2-222ENST00000584908 POGKQ9P215 609 aa23.38■■□□□ 1.33
ERBB2-222ENST00000584908 CLSPNQ9HAW4 1339 aa23.37■■□□□ 1.33
ERBB2-222ENST00000584908 TONSLQ96HA7 1378 aa23.37■■□□□ 1.33
ERBB2-222ENST00000584908 MED1Q15648 1581 aaPredicted RBP23.36■■□□□ 1.33
ERBB2-222ENST00000584908 ORAI2Q96SN7 254 aa23.35■■□□□ 1.33
ERBB2-222ENST00000584908 SHPRHQ149N8 1683 aa23.34■■□□□ 1.33
ERBB2-222ENST00000584908 RGPD8O14715 1765 aaPredicted RBP23.34■■□□□ 1.33
ERBB2-222ENST00000584908 SAFB2Q14151 953 aaKnown RBP eCLIP23.33■■□□□ 1.33
ERBB2-222ENST00000584908 JCADQ9P266 1359 aa23.33■■□□□ 1.33
ERBB2-222ENST00000584908 USP32Q8NFA0 1604 aa23.32■■□□□ 1.32
ERBB2-222ENST00000584908 KIF1AQ12756 1690 aa23.32■■□□□ 1.32
ERBB2-222ENST00000584908 NBPF8Q3BBV2 869 aa23.32■■□□□ 1.32
ERBB2-222ENST00000584908 GPRASP1Q5JY77 1395 aa23.32■■□□□ 1.32
ERBB2-222ENST00000584908 ANKARQ7Z5J8 1434 aa23.32■■□□□ 1.32
ERBB2-222ENST00000584908 SOS2Q07890 1332 aaPredicted RBP23.29■■□□□ 1.32
ERBB2-222ENST00000584908 ESCO1Q5FWF5 840 aa23.29■■□□□ 1.32
ERBB2-222ENST00000584908 TULP4Q9NRJ4 1543 aa23.28■■□□□ 1.32
ERBB2-222ENST00000584908 ROCK2O75116 1388 aaKnown RBP23.28■■□□□ 1.32
ERBB2-222ENST00000584908 EIF3AQ14152 1382 aaKnown RBP23.28■■□□□ 1.32
ERBB2-222ENST00000584908 MINK1Q8N4C8 1332 aaPredicted RBP23.28■■□□□ 1.32
ERBB2-222ENST00000584908 RALGAPBQ86X10 1494 aa23.27■■□□□ 1.32
ERBB2-222ENST00000584908 WASLO00401 505 aaPredicted RBP23.27■■□□□ 1.32
ERBB2-222ENST00000584908 DDX17Q92841 729 aaKnown RBP23.27■■□□□ 1.32
ERBB2-222ENST00000584908 LRRC59Q96AG4 307 aaKnown RBP23.27■■□□□ 1.32
ERBB2-222ENST00000584908 DISP3Q9P2K9 1392 aa23.26■■□□□ 1.31
ERBB2-222ENST00000584908 NPHP3Q7Z494 1330 aa23.26■■□□□ 1.31
ERBB2-222ENST00000584908 NUTM2FA1L443 756 aa23.26■■□□□ 1.31
ERBB2-222ENST00000584908 HIRIP3Q9BW71 556 aaPredicted RBP23.26■■□□□ 1.31
ERBB2-222ENST00000584908 PXDNQ92626 1479 aa23.26■■□□□ 1.31
ERBB2-222ENST00000584908 QRICH2Q9H0J4 1663 aa23.26■■□□□ 1.31
ERBB2-222ENST00000584908 TIMELESSQ9UNS1 1208 aa23.25■■□□□ 1.31
ERBB2-222ENST00000584908 SPATA31A6Q5VVP1 1343 aa23.24■■□□□ 1.31
ERBB2-222ENST00000584908 CENPJQ9HC77 1338 aaPredicted RBP23.24■■□□□ 1.31
ERBB2-222ENST00000584908 ITSN1Q15811 1721 aa23.22■■□□□ 1.31
ERBB2-222ENST00000584908 PRR36Q9H6K5 1346 aa23.21■■□□□ 1.31
ERBB2-222ENST00000584908 PHF8Q9UPP1 1060 aa23.21■■□□□ 1.31
ERBB2-222ENST00000584908 PNPLA6Q8IY17 1366 aa23.21■■□□□ 1.31
ERBB2-222ENST00000584908 ATP7BP35670 1465 aa23.21■■□□□ 1.31
ERBB2-222ENST00000584908 FOXO3O43524 673 aa23.2■■□□□ 1.3
ERBB2-222ENST00000584908 COL22A1Q8NFW1 1626 aaPredicted RBP23.19■■□□□ 1.3
ERBB2-222ENST00000584908 TOPAZ1Q8N9V7 1692 aa23.19■■□□□ 1.3
ERBB2-222ENST00000584908 LRP6O75581 1613 aa23.18■■□□□ 1.3
ERBB2-222ENST00000584908 CDK19Q9BWU1 502 aa23.17■■□□□ 1.3
ERBB2-222ENST00000584908 CARD11Q9BXL7 1154 aa23.15■■□□□ 1.3
ERBB2-222ENST00000584908 SBNO2Q9Y2G9 1366 aa23.15■■□□□ 1.3
ERBB2-222ENST00000584908 CCER1Q8TC90 406 aaPredicted RBP23.13■■□□□ 1.29
ERBB2-222ENST00000584908 NUDT16Q96DE0 195 aaKnown RBP23.13■■□□□ 1.29
ERBB2-222ENST00000584908 TRPM3Q9HCF6 1732 aaPredicted RBP23.12■■□□□ 1.29
ERBB2-222ENST00000584908 XPCQ01831 940 aaPredicted RBP23.11■■□□□ 1.29
ERBB2-222ENST00000584908 KRT28Q7Z3Y7 464 aa23.11■■□□□ 1.29
ERBB2-222ENST00000584908 SPATA31A3Q5VYP0 1347 aa23.11■■□□□ 1.29
ERBB2-222ENST00000584908 SBNO1A3KN83 1393 aa23.11■■□□□ 1.29
ERBB2-222ENST00000584908 PMFBP1Q8TBY8 1022 aa23.1■■□□□ 1.29
ERBB2-222ENST00000584908 PSME1Q06323 249 aa23.09■■□□□ 1.29
ERBB2-222ENST00000584908 PHF23Q9BUL5 403 aaPredicted RBP23.09■■□□□ 1.29
ERBB2-222ENST00000584908 CCDC61Q9Y6R9 512 aa23.09■■□□□ 1.29
ERBB2-222ENST00000584908 TNS3Q68CZ2 1445 aa23.09■■□□□ 1.29
ERBB2-222ENST00000584908 RGS17Q9UGC6 210 aaPredicted RBP23.08■■□□□ 1.29
ERBB2-222ENST00000584908 POLR3AO14802 1390 aaPredicted RBP23.08■■□□□ 1.29
ERBB2-222ENST00000584908 PLEKHG3A1L390 1219 aa23.08■■□□□ 1.28
ERBB2-222ENST00000584908 EVC2Q86UK5 1308 aa23.07■■□□□ 1.28
ERBB2-222ENST00000584908 ALS2Q96Q42 1657 aa23.07■■□□□ 1.28
ERBB2-222ENST00000584908 SRPK2P78362 688 aaKnown RBP23.06■■□□□ 1.28
ERBB2-222ENST00000584908 MARF1Q9Y4F3 1742 aaKnown RBP23.05■■□□□ 1.28
ERBB2-222ENST00000584908 CABP2Q9NPB3 220 aa23.05■■□□□ 1.28
ERBB2-222ENST00000584908 NUTM2BA6NNL0 878 aaPredicted RBP23.04■■□□□ 1.28
ERBB2-222ENST00000584908 NUTM2EB1AL46 878 aaPredicted RBP23.04■■□□□ 1.28
ERBB2-222ENST00000584908 NUTM2AQ8IVF1 878 aaPredicted RBP23.04■■□□□ 1.28
ERBB2-222ENST00000584908 NGDNQ8NEJ9 315 aaKnown RBP23.04■■□□□ 1.28
ERBB2-222ENST00000584908 PPIP5K1Q6PFW1 1433 aa23.03■■□□□ 1.28
ERBB2-222ENST00000584908 ARHGEF10O15013 1369 aa23.03■■□□□ 1.28
ERBB2-222ENST00000584908 ILDR2Q71H61 639 aa23.03■■□□□ 1.28
ERBB2-222ENST00000584908 ABCA3Q99758 1704 aa23.02■■□□□ 1.27
ERBB2-222ENST00000584908 ACEP12821 1306 aa23.01■■□□□ 1.27
ERBB2-222ENST00000584908 MEX3CQ5U5Q3 659 aaKnown RBP23.01■■□□□ 1.27
ERBB2-222ENST00000584908 ATAD2Q6PL18 1390 aa22.99■■□□□ 1.27
ERBB2-222ENST00000584908 CRYBG1Q9Y4K1 1723 aa22.98■■□□□ 1.27
ERBB2-222ENST00000584908 TESK2Q96S53 571 aa22.98■■□□□ 1.27
ERBB2-222ENST00000584908 ST20-MTHFSA0A0A6YYL1 179 aa22.97■■□□□ 1.27
ERBB2-222ENST00000584908 PUS7Q96PZ0 661 aaKnown RBP22.97■■□□□ 1.27
ERBB2-222ENST00000584908 BRD4O60885 1362 aaPredicted RBP22.97■■□□□ 1.27
ERBB2-222ENST00000584908 USP47Q96K76 1375 aa22.97■■□□□ 1.27
ERBB2-222ENST00000584908 AKAP12Q02952 1782 aa22.96■■□□□ 1.27
ERBB2-222ENST00000584908 SLC24A1O60721 1099 aa22.96■■□□□ 1.27
ERBB2-222ENST00000584908 CABP1Q9NZU7 370 aa22.96■■□□□ 1.27
ERBB2-222ENST00000584908 ZNF772Q68DY9 489 aaPredicted RBP22.95■■□□□ 1.26
ERBB2-222ENST00000584908 POTEAQ6S8J7 498 aa22.95■■□□□ 1.26
ERBB2-222ENST00000584908 ADAMTS2O95450 1211 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms