RNA–Protein interactions for RNA: ENST00000581514.1

SCN4A-202, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

TSL 3

Gene SCN4A, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-202ENST00000581514 RBM6P78332 1123 aaKnown RBP22.22■■□□□ 1.15
SCN4A-202ENST00000581514 RGL3Q3MIN7 710 aa22.22■■□□□ 1.15
SCN4A-202ENST00000581514 NGLY1Q96IV0 654 aa22.22■■□□□ 1.15
SCN4A-202ENST00000581514 RGS12O14924 1447 aa22.22■■□□□ 1.15
SCN4A-202ENST00000581514 MPHOSPH9Q99550 1183 aa22.21■■□□□ 1.15
SCN4A-202ENST00000581514 ANKRD30BQ9BXX2 1392 aa22.2■■□□□ 1.14
SCN4A-202ENST00000581514 TECPR2O15040 1411 aa22.19■■□□□ 1.14
SCN4A-202ENST00000581514 COL22A1Q8NFW1 1626 aaPredicted RBP22.19■■□□□ 1.14
SCN4A-202ENST00000581514 ESCO1Q5FWF5 840 aa22.18■■□□□ 1.14
SCN4A-202ENST00000581514 STK26Q9P289 416 aa22.18■■□□□ 1.14
SCN4A-202ENST00000581514 LRPPRCP42704 1394 aaKnown RBP22.17■■□□□ 1.14
SCN4A-202ENST00000581514 NPHP3Q7Z494 1330 aa22.17■■□□□ 1.14
SCN4A-202ENST00000581514 KNDC1Q76NI1 1749 aa22.17■■□□□ 1.14
SCN4A-202ENST00000581514 WAPLQ7Z5K2 1190 aa22.16■■□□□ 1.14
SCN4A-202ENST00000581514 PXDNQ92626 1479 aa22.15■■□□□ 1.14
SCN4A-202ENST00000581514 ABCC11Q96J66 1382 aa22.15■■□□□ 1.14
SCN4A-202ENST00000581514 PIK3C2GO75747 1445 aa22.14■■□□□ 1.14
SCN4A-202ENST00000581514 TMEM132EQ6IEE7 984 aa22.14■■□□□ 1.13
SCN4A-202ENST00000581514 USP21Q9UK80 565 aa22.14■■□□□ 1.13
SCN4A-202ENST00000581514 MYOM2P54296 1465 aa22.14■■□□□ 1.13
SCN4A-202ENST00000581514 FNBP4Q8N3X1 1017 aaPredicted RBP22.13■■□□□ 1.13
SCN4A-202ENST00000581514 PLEKHH1Q9ULM0 1364 aa22.12■■□□□ 1.13
SCN4A-202ENST00000581514 FOXO3O43524 673 aa22.12■■□□□ 1.13
SCN4A-202ENST00000581514 TRPC5Q9UL62 973 aaPredicted RBP22.12■■□□□ 1.13
SCN4A-202ENST00000581514 NUTM2FA1L443 756 aa22.11■■□□□ 1.13
SCN4A-202ENST00000581514 XPCQ01831 940 aaPredicted RBP22.11■■□□□ 1.13
SCN4A-202ENST00000581514 YTHDC2Q9H6S0 1430 aaKnown RBP22.1■■□□□ 1.13
SCN4A-202ENST00000581514 FMN2Q9NZ56 1722 aa22.1■■□□□ 1.13
SCN4A-202ENST00000581514 MARF1Q9Y4F3 1742 aaKnown RBP22.1■■□□□ 1.13
SCN4A-202ENST00000581514 ATRNO75882 1429 aa22.09■■□□□ 1.13
SCN4A-202ENST00000581514 ACIN1Q9UKV3 1341 aaKnown RBP22.07■■□□□ 1.12
SCN4A-202ENST00000581514 KIF1AQ12756 1690 aa22.06■■□□□ 1.12
SCN4A-202ENST00000581514 NRXN1Q9ULB1 1477 aa22.05■■□□□ 1.12
SCN4A-202ENST00000581514 ATAD2Q6PL18 1390 aa22.05■■□□□ 1.12
SCN4A-202ENST00000581514 SIRT1Q96EB6 747 aa22.05■■□□□ 1.12
SCN4A-202ENST00000581514 C14orf93Q9H972 538 aaKnown RBP22.05■■□□□ 1.12
SCN4A-202ENST00000581514 BCL9LQ86UU0 1499 aa22.04■■□□□ 1.12
SCN4A-202ENST00000581514 RGPD8O14715 1765 aaPredicted RBP22.02■■□□□ 1.12
SCN4A-202ENST00000581514 SPATA31A3Q5VYP0 1347 aa22.02■■□□□ 1.12
SCN4A-202ENST00000581514 DHX57Q6P158 1386 aaKnown RBP22.01■■□□□ 1.11
SCN4A-202ENST00000581514 CFAP70Q5T0N1 1121 aa22.01■■□□□ 1.11
SCN4A-202ENST00000581514 TNKS1BP1Q9C0C2 1729 aaKnown RBP22■■□□□ 1.11
SCN4A-202ENST00000581514 KRT28Q7Z3Y7 464 aa21.99■■□□□ 1.11
SCN4A-202ENST00000581514 GJD4Q96KN9 370 aaPredicted RBP21.97■■□□□ 1.11
SCN4A-202ENST00000581514 PHF8Q9UPP1 1060 aa21.97■■□□□ 1.11
SCN4A-202ENST00000581514 RAB3GAP2Q9H2M9 1393 aa21.97■■□□□ 1.11
SCN4A-202ENST00000581514 EP400Q96L91 3159 aa21.97■■□□□ 1.11
SCN4A-202ENST00000581514 USP32Q8NFA0 1604 aa21.96■■□□□ 1.11
SCN4A-202ENST00000581514 PRAM1Q96QH2 718 aa21.96■■□□□ 1.11
SCN4A-202ENST00000581514 SLIT2O94813 1529 aa21.96■■□□□ 1.11
SCN4A-202ENST00000581514 SAFB2Q14151 953 aaKnown RBP eCLIP21.95■■□□□ 1.1
SCN4A-202ENST00000581514 TNS3Q68CZ2 1445 aa21.95■■□□□ 1.1
SCN4A-202ENST00000581514 DLC1Q96QB1 1528 aa21.95■■□□□ 1.1
SCN4A-202ENST00000581514 UNC5CLQ8IV45 518 aa21.94■■□□□ 1.1
SCN4A-202ENST00000581514 PSME1Q06323 249 aa21.93■■□□□ 1.1
SCN4A-202ENST00000581514 GLI3P10071 1580 aa21.92■■□□□ 1.1
SCN4A-202ENST00000581514 RALGAPBQ86X10 1494 aa21.91■■□□□ 1.1
SCN4A-202ENST00000581514 SBNO1A3KN83 1393 aa21.91■■□□□ 1.1
SCN4A-202ENST00000581514 POGKQ9P215 609 aa21.91■■□□□ 1.1
SCN4A-202ENST00000581514 ADGRB1O14514 1584 aa21.91■■□□□ 1.1
SCN4A-202ENST00000581514 HAP1P54257 671 aaPredicted RBP21.9■■□□□ 1.1
SCN4A-202ENST00000581514 ADGRB2O60241 1585 aa21.9■■□□□ 1.1
SCN4A-202ENST00000581514 ANKARQ7Z5J8 1434 aa21.89■■□□□ 1.1
SCN4A-202ENST00000581514 ABCA3Q99758 1704 aa21.89■■□□□ 1.1
SCN4A-202ENST00000581514 CABLES1Q8TDN4 633 aa21.89■■□□□ 1.09
SCN4A-202ENST00000581514 CCDC125Q86Z20 511 aa21.88■■□□□ 1.09
SCN4A-202ENST00000581514 ARHGEF10O15013 1369 aa21.87■■□□□ 1.09
SCN4A-202ENST00000581514 PLCH1Q4KWH8 1693 aa21.87■■□□□ 1.09
SCN4A-202ENST00000581514 NWD2Q9ULI1 1742 aa21.86■■□□□ 1.09
SCN4A-202ENST00000581514 BRWD3Q6RI45 1802 aa21.86■■□□□ 1.09
SCN4A-202ENST00000581514 PLEKHG5O94827 1062 aa21.86■■□□□ 1.09
SCN4A-202ENST00000581514 LMOD2Q6P5Q4 547 aa21.86■■□□□ 1.09
SCN4A-202ENST00000581514 PMFBP1Q8TBY8 1022 aa21.86■■□□□ 1.09
SCN4A-202ENST00000581514 TRAK1Q9UPV9 953 aa21.86■■□□□ 1.09
SCN4A-202ENST00000581514 KDM2AQ9Y2K7 1162 aa21.84■■□□□ 1.09
SCN4A-202ENST00000581514 SRCAPQ6ZRS2 3230 aa21.84■■□□□ 1.09
SCN4A-202ENST00000581514 TRPM3Q9HCF6 1732 aaPredicted RBP21.83■■□□□ 1.09
SCN4A-202ENST00000581514 VPS72Q15906 364 aa21.83■■□□□ 1.09
SCN4A-202ENST00000581514 HIRIP3Q9BW71 556 aaPredicted RBP21.83■■□□□ 1.09
SCN4A-202ENST00000581514 MINK1Q8N4C8 1332 aaPredicted RBP21.82■■□□□ 1.08
SCN4A-202ENST00000581514 DCAF11Q8TEB1 546 aa21.82■■□□□ 1.08
SCN4A-202ENST00000581514 ZRANB1Q9UGI0 708 aa21.82■■□□□ 1.08
SCN4A-202ENST00000581514 EIF3AQ14152 1382 aaKnown RBP21.82■■□□□ 1.08
SCN4A-202ENST00000581514 PRR36Q9H6K5 1346 aa21.8■■□□□ 1.08
SCN4A-202ENST00000581514 TULP4Q9NRJ4 1543 aa21.8■■□□□ 1.08
SCN4A-202ENST00000581514 SEPT12Q8IYM1 358 aa21.8■■□□□ 1.08
SCN4A-202ENST00000581514 STAC3Q96MF2 364 aa21.8■■□□□ 1.08
SCN4A-202ENST00000581514 BLMP54132 1417 aaPredicted RBP21.8■■□□□ 1.08
SCN4A-202ENST00000581514 ALS2Q96Q42 1657 aa21.79■■□□□ 1.08
SCN4A-202ENST00000581514 GPRASP1Q5JY77 1395 aa21.79■■□□□ 1.08
SCN4A-202ENST00000581514 FAM83GA6ND36 823 aa21.79■■□□□ 1.08
SCN4A-202ENST00000581514 CCDC9Q9Y3X0 531 aaKnown RBP21.79■■□□□ 1.08
SCN4A-202ENST00000581514 WASLO00401 505 aaPredicted RBP21.78■■□□□ 1.08
SCN4A-202ENST00000581514 ONECUT3O60422 494 aaPredicted RBP21.77■■□□□ 1.08
SCN4A-202ENST00000581514 NRAPQ86VF7 1730 aa21.77■■□□□ 1.08
SCN4A-202ENST00000581514 HRCP23327 699 aa21.76■■□□□ 1.07
SCN4A-202ENST00000581514 ARHGEF28Q8N1W1 1705 aaKnown RBP21.75■■□□□ 1.07
SCN4A-202ENST00000581514 COL14A1Q05707 1796 aaKnown RBP21.74■■□□□ 1.07
SCN4A-202ENST00000581514 KRT27Q7Z3Y8 459 aa21.73■■□□□ 1.07
SCN4A-202ENST00000581514 ITSN1Q15811 1721 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms