RNA–Protein interactions for RNA: ENST00000578789.1

MKS1-207, Transcript of Meckel syndrome, type 1, humanhuman

TSL 4

Gene MKS1, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-207ENST00000578789 COL16A1Q07092 1604 aaPredicted RBP20.92■□□□□ 0.94
MKS1-207ENST00000578789 NHSL1Q5SYE7 1610 aa20.92■□□□□ 0.94
MKS1-207ENST00000578789 ARHGEF28Q8N1W1 1705 aaKnown RBP20.92■□□□□ 0.94
MKS1-207ENST00000578789 L3MBTL2Q969R5 705 aa20.91■□□□□ 0.94
MKS1-207ENST00000578789 FMN2Q9NZ56 1722 aa20.9■□□□□ 0.94
MKS1-207ENST00000578789 ADGRB2O60241 1585 aa20.9■□□□□ 0.94
MKS1-207ENST00000578789 BRINP3Q76B58 766 aa20.9■□□□□ 0.94
MKS1-207ENST00000578789 NEUROD1Q13562 356 aa20.89■□□□□ 0.93
MKS1-207ENST00000578789 TRPM1Q7Z4N2 1603 aa20.88■□□□□ 0.93
MKS1-207ENST00000578789 MED1Q15648 1581 aaPredicted RBP20.86■□□□□ 0.93
MKS1-207ENST00000578789 PRAM1Q96QH2 718 aa20.86■□□□□ 0.93
MKS1-207ENST00000578789 PCGF6Q9BYE7 350 aa20.86■□□□□ 0.93
MKS1-207ENST00000578789 TRAK1Q9UPV9 953 aa20.85■□□□□ 0.93
MKS1-207ENST00000578789 SHPRHQ149N8 1683 aa20.82■□□□□ 0.92
MKS1-207ENST00000578789 NBPF1Q3BBV0 1214 aa20.81■□□□□ 0.92
MKS1-207ENST00000578789 POGKQ9P215 609 aa20.81■□□□□ 0.92
MKS1-207ENST00000578789 TONSLQ96HA7 1378 aa20.81■□□□□ 0.92
MKS1-207ENST00000578789 KIF1AQ12756 1690 aa20.8■□□□□ 0.92
MKS1-207ENST00000578789 JCADQ9P266 1359 aa20.8■□□□□ 0.92
MKS1-207ENST00000578789 USP32Q8NFA0 1604 aa20.78■□□□□ 0.92
MKS1-207ENST00000578789 RGPD8O14715 1765 aaPredicted RBP20.78■□□□□ 0.92
MKS1-207ENST00000578789 SAFB2Q14151 953 aaKnown RBP eCLIP20.78■□□□□ 0.92
MKS1-207ENST00000578789 ORAI2Q96SN7 254 aa20.78■□□□□ 0.92
MKS1-207ENST00000578789 ANKARQ7Z5J8 1434 aa20.77■□□□□ 0.91
MKS1-207ENST00000578789 TULP4Q9NRJ4 1543 aa20.76■□□□□ 0.91
MKS1-207ENST00000578789 CLSPNQ9HAW4 1339 aa20.76■□□□□ 0.91
MKS1-207ENST00000578789 GPRASP1Q5JY77 1395 aa20.75■□□□□ 0.91
MKS1-207ENST00000578789 EIF3AQ14152 1382 aaKnown RBP20.74■□□□□ 0.91
MKS1-207ENST00000578789 DISP3Q9P2K9 1392 aa20.74■□□□□ 0.91
MKS1-207ENST00000578789 NBPF8Q3BBV2 869 aa20.74■□□□□ 0.91
MKS1-207ENST00000578789 RALGAPBQ86X10 1494 aa20.74■□□□□ 0.91
MKS1-207ENST00000578789 MINK1Q8N4C8 1332 aaPredicted RBP20.74■□□□□ 0.91
MKS1-207ENST00000578789 QRICH2Q9H0J4 1663 aa20.73■□□□□ 0.91
MKS1-207ENST00000578789 ROCK2O75116 1388 aaKnown RBP20.73■□□□□ 0.91
MKS1-207ENST00000578789 ESCO1Q5FWF5 840 aa20.73■□□□□ 0.91
MKS1-207ENST00000578789 DDX17Q92841 729 aaKnown RBP20.73■□□□□ 0.91
MKS1-207ENST00000578789 PXDNQ92626 1479 aa20.73■□□□□ 0.91
MKS1-207ENST00000578789 SOS2Q07890 1332 aaPredicted RBP20.73■□□□□ 0.91
MKS1-207ENST00000578789 NUTM2FA1L443 756 aa20.72■□□□□ 0.91
MKS1-207ENST00000578789 HIRIP3Q9BW71 556 aaPredicted RBP20.71■□□□□ 0.91
MKS1-207ENST00000578789 NPHP3Q7Z494 1330 aa20.71■□□□□ 0.91
MKS1-207ENST00000578789 ITSN1Q15811 1721 aa20.7■□□□□ 0.9
MKS1-207ENST00000578789 WASLO00401 505 aaPredicted RBP20.7■□□□□ 0.9
MKS1-207ENST00000578789 LRRC59Q96AG4 307 aaKnown RBP20.7■□□□□ 0.9
MKS1-207ENST00000578789 SPATA31A6Q5VVP1 1343 aa20.7■□□□□ 0.9
MKS1-207ENST00000578789 CENPJQ9HC77 1338 aaPredicted RBP20.69■□□□□ 0.9
MKS1-207ENST00000578789 PNPLA6Q8IY17 1366 aa20.69■□□□□ 0.9
MKS1-207ENST00000578789 ATP7BP35670 1465 aa20.69■□□□□ 0.9
MKS1-207ENST00000578789 LRP6O75581 1613 aa20.68■□□□□ 0.9
MKS1-207ENST00000578789 COL22A1Q8NFW1 1626 aaPredicted RBP20.68■□□□□ 0.9
MKS1-207ENST00000578789 TOPAZ1Q8N9V7 1692 aa20.68■□□□□ 0.9
MKS1-207ENST00000578789 PRR36Q9H6K5 1346 aa20.67■□□□□ 0.9
MKS1-207ENST00000578789 PHF8Q9UPP1 1060 aa20.66■□□□□ 0.9
MKS1-207ENST00000578789 FOXO3O43524 673 aa20.65■□□□□ 0.9
MKS1-207ENST00000578789 TIMELESSQ9UNS1 1208 aa20.63■□□□□ 0.89
MKS1-207ENST00000578789 TRPM3Q9HCF6 1732 aaPredicted RBP20.61■□□□□ 0.89
MKS1-207ENST00000578789 CDK19Q9BWU1 502 aa20.61■□□□□ 0.89
MKS1-207ENST00000578789 CARD11Q9BXL7 1154 aa20.6■□□□□ 0.89
MKS1-207ENST00000578789 SBNO2Q9Y2G9 1366 aa20.59■□□□□ 0.89
MKS1-207ENST00000578789 XPCQ01831 940 aaPredicted RBP20.59■□□□□ 0.89
MKS1-207ENST00000578789 SBNO1A3KN83 1393 aa20.59■□□□□ 0.89
MKS1-207ENST00000578789 NUDT16Q96DE0 195 aaKnown RBP20.58■□□□□ 0.89
MKS1-207ENST00000578789 TNS3Q68CZ2 1445 aa20.58■□□□□ 0.88
MKS1-207ENST00000578789 SPATA31A3Q5VYP0 1347 aa20.57■□□□□ 0.88
MKS1-207ENST00000578789 KRT28Q7Z3Y7 464 aa20.57■□□□□ 0.88
MKS1-207ENST00000578789 PMFBP1Q8TBY8 1022 aa20.57■□□□□ 0.88
MKS1-207ENST00000578789 CCER1Q8TC90 406 aaPredicted RBP20.57■□□□□ 0.88
MKS1-207ENST00000578789 ALS2Q96Q42 1657 aa20.56■□□□□ 0.88
MKS1-207ENST00000578789 PSME1Q06323 249 aa20.55■□□□□ 0.88
MKS1-207ENST00000578789 RGS17Q9UGC6 210 aaPredicted RBP20.55■□□□□ 0.88
MKS1-207ENST00000578789 MARF1Q9Y4F3 1742 aaKnown RBP20.54■□□□□ 0.88
MKS1-207ENST00000578789 CCDC61Q9Y6R9 512 aa20.54■□□□□ 0.88
MKS1-207ENST00000578789 POLR3AO14802 1390 aaPredicted RBP20.54■□□□□ 0.88
MKS1-207ENST00000578789 EVC2Q86UK5 1308 aa20.53■□□□□ 0.88
MKS1-207ENST00000578789 ABCA3Q99758 1704 aa20.53■□□□□ 0.88
MKS1-207ENST00000578789 NUTM2BA6NNL0 878 aaPredicted RBP20.53■□□□□ 0.88
MKS1-207ENST00000578789 NUTM2EB1AL46 878 aaPredicted RBP20.53■□□□□ 0.88
MKS1-207ENST00000578789 NUTM2AQ8IVF1 878 aaPredicted RBP20.53■□□□□ 0.88
MKS1-207ENST00000578789 PLEKHG3A1L390 1219 aa20.52■□□□□ 0.88
MKS1-207ENST00000578789 SRPK2P78362 688 aaKnown RBP20.52■□□□□ 0.88
MKS1-207ENST00000578789 MEX3CQ5U5Q3 659 aaKnown RBP20.52■□□□□ 0.88
MKS1-207ENST00000578789 ILDR2Q71H61 639 aa20.52■□□□□ 0.88
MKS1-207ENST00000578789 PPIP5K1Q6PFW1 1433 aa20.52■□□□□ 0.87
MKS1-207ENST00000578789 ARHGEF10O15013 1369 aa20.51■□□□□ 0.87
MKS1-207ENST00000578789 CABP2Q9NPB3 220 aa20.51■□□□□ 0.87
MKS1-207ENST00000578789 NGDNQ8NEJ9 315 aaKnown RBP20.5■□□□□ 0.87
MKS1-207ENST00000578789 CRYBG1Q9Y4K1 1723 aa20.49■□□□□ 0.87
MKS1-207ENST00000578789 ACEP12821 1306 aa20.47■□□□□ 0.87
MKS1-207ENST00000578789 ATAD2Q6PL18 1390 aa20.46■□□□□ 0.87
MKS1-207ENST00000578789 AKAP12Q02952 1782 aa20.46■□□□□ 0.87
MKS1-207ENST00000578789 USP47Q96K76 1375 aa20.46■□□□□ 0.87
MKS1-207ENST00000578789 ADAMTS2O95450 1211 aa20.44■□□□□ 0.86
MKS1-207ENST00000578789 ZNF772Q68DY9 489 aaPredicted RBP20.44■□□□□ 0.86
MKS1-207ENST00000578789 POTEAQ6S8J7 498 aa20.44■□□□□ 0.86
MKS1-207ENST00000578789 AFF2P51816 1311 aa20.44■□□□□ 0.86
MKS1-207ENST00000578789 BRD4O60885 1362 aaPredicted RBP20.44■□□□□ 0.86
MKS1-207ENST00000578789 C8orf37Q96NL8 207 aa20.43■□□□□ 0.86
MKS1-207ENST00000578789 TESK2Q96S53 571 aa20.43■□□□□ 0.86
MKS1-207ENST00000578789 ST20-MTHFSA0A0A6YYL1 179 aa20.42■□□□□ 0.86
MKS1-207ENST00000578789 CABP1Q9NZU7 370 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms