RNA–Protein interactions for RNA: ENST00000578415.1

TSEN54-205, Transcript of tRNA splicing endonuclease subunit 54, humanhuman

TSL 3

Gene TSEN54, Length 994 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSEN54-205ENST00000578415 USP21Q9UK80 565 aa31.53■■■□□ 2.64
TSEN54-205ENST00000578415 ESCO1Q5FWF5 840 aa31.52■■■□□ 2.64
TSEN54-205ENST00000578415 FNBP4Q8N3X1 1017 aaPredicted RBP31.52■■■□□ 2.64
TSEN54-205ENST00000578415 COL22A1Q8NFW1 1626 aaPredicted RBP31.52■■■□□ 2.64
TSEN54-205ENST00000578415 CCDC144AA2RUR9 1427 aa31.51■■■□□ 2.64
TSEN54-205ENST00000578415 SPATA31E1Q6ZUB1 1445 aa31.51■■■□□ 2.64
TSEN54-205ENST00000578415 MYOM2P54296 1465 aa31.51■■■□□ 2.63
TSEN54-205ENST00000578415 NPHP3Q7Z494 1330 aa31.5■■■□□ 2.63
TSEN54-205ENST00000578415 TECPR2O15040 1411 aa31.5■■■□□ 2.63
TSEN54-205ENST00000578415 PXDNQ92626 1479 aa31.5■■■□□ 2.63
TSEN54-205ENST00000578415 RGL3Q3MIN7 710 aa31.48■■■□□ 2.63
TSEN54-205ENST00000578415 TRPC5Q9UL62 973 aaPredicted RBP31.48■■■□□ 2.63
TSEN54-205ENST00000578415 LRPPRCP42704 1394 aaKnown RBP31.47■■■□□ 2.63
TSEN54-205ENST00000578415 WAPLQ7Z5K2 1190 aa31.47■■■□□ 2.63
TSEN54-205ENST00000578415 STK26Q9P289 416 aa31.47■■■□□ 2.63
TSEN54-205ENST00000578415 FOXO3O43524 673 aa31.46■■■□□ 2.63
TSEN54-205ENST00000578415 ATRNO75882 1429 aa31.46■■■□□ 2.63
TSEN54-205ENST00000578415 ANKRD30BQ9BXX2 1392 aa31.45■■■□□ 2.63
TSEN54-205ENST00000578415 XPCQ01831 940 aaPredicted RBP31.45■■■□□ 2.63
TSEN54-205ENST00000578415 ABCC11Q96J66 1382 aa31.43■■■□□ 2.62
TSEN54-205ENST00000578415 PLEKHH1Q9ULM0 1364 aa31.43■■■□□ 2.62
TSEN54-205ENST00000578415 NUTM2FA1L443 756 aa31.42■■■□□ 2.62
TSEN54-205ENST00000578415 TMEM132EQ6IEE7 984 aa31.42■■■□□ 2.62
TSEN54-205ENST00000578415 MPHOSPH9Q99550 1183 aa31.42■■■□□ 2.62
TSEN54-205ENST00000578415 ATAD2Q6PL18 1390 aa31.42■■■□□ 2.62
TSEN54-205ENST00000578415 PIK3C2GO75747 1445 aa31.41■■■□□ 2.62
TSEN54-205ENST00000578415 IFT172Q9UG01 1749 aa31.41■■■□□ 2.62
TSEN54-205ENST00000578415 BCL9LQ86UU0 1499 aa31.4■■■□□ 2.62
TSEN54-205ENST00000578415 KNDC1Q76NI1 1749 aa31.37■■■□□ 2.61
TSEN54-205ENST00000578415 YTHDC2Q9H6S0 1430 aaKnown RBP31.35■■■□□ 2.61
TSEN54-205ENST00000578415 FMN2Q9NZ56 1722 aa31.31■■■□□ 2.6
TSEN54-205ENST00000578415 SPATA31A3Q5VYP0 1347 aa31.3■■■□□ 2.6
TSEN54-205ENST00000578415 MARF1Q9Y4F3 1742 aaKnown RBP31.3■■■□□ 2.6
TSEN54-205ENST00000578415 SIRT1Q96EB6 747 aa31.28■■■□□ 2.6
TSEN54-205ENST00000578415 GJD4Q96KN9 370 aaPredicted RBP31.28■■■□□ 2.6
TSEN54-205ENST00000578415 C14orf93Q9H972 538 aaKnown RBP31.27■■■□□ 2.6
TSEN54-205ENST00000578415 KIF1AQ12756 1690 aa31.26■■■□□ 2.6
TSEN54-205ENST00000578415 NRXN1Q9ULB1 1477 aa31.26■■■□□ 2.59
TSEN54-205ENST00000578415 SLIT2O94813 1529 aa31.24■■■□□ 2.59
TSEN54-205ENST00000578415 KRT28Q7Z3Y7 464 aa31.24■■■□□ 2.59
TSEN54-205ENST00000578415 CFAP70Q5T0N1 1121 aa31.22■■■□□ 2.59
TSEN54-205ENST00000578415 UNC5CLQ8IV45 518 aa31.22■■■□□ 2.59
TSEN54-205ENST00000578415 EP400Q96L91 3159 aa31.22■■■□□ 2.59
TSEN54-205ENST00000578415 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.21■■■□□ 2.59
TSEN54-205ENST00000578415 RALGAPBQ86X10 1494 aa31.21■■■□□ 2.59
TSEN54-205ENST00000578415 SRCAPQ6ZRS2 3230 aa31.2■■■□□ 2.59
TSEN54-205ENST00000578415 GLI3P10071 1580 aa31.19■■■□□ 2.58
TSEN54-205ENST00000578415 PHF8Q9UPP1 1060 aa31.19■■■□□ 2.58
TSEN54-205ENST00000578415 USP32Q8NFA0 1604 aa31.19■■■□□ 2.58
TSEN54-205ENST00000578415 DHX57Q6P158 1386 aaKnown RBP31.18■■■□□ 2.58
TSEN54-205ENST00000578415 TNS3Q68CZ2 1445 aa31.18■■■□□ 2.58
TSEN54-205ENST00000578415 CCDC125Q86Z20 511 aa31.17■■■□□ 2.58
TSEN54-205ENST00000578415 PRAM1Q96QH2 718 aa31.16■■■□□ 2.58
TSEN54-205ENST00000578415 SAFB2Q14151 953 aaKnown RBP eCLIP31.14■■■□□ 2.58
TSEN54-205ENST00000578415 CABLES1Q8TDN4 633 aa31.14■■■□□ 2.58
TSEN54-205ENST00000578415 ACIN1Q9UKV3 1341 aaKnown RBP31.14■■■□□ 2.58
TSEN54-205ENST00000578415 PSME1Q06323 249 aa31.13■■■□□ 2.57
TSEN54-205ENST00000578415 ZRANB1Q9UGI0 708 aa31.13■■■□□ 2.57
TSEN54-205ENST00000578415 RGPD8O14715 1765 aaPredicted RBP31.12■■■□□ 2.57
TSEN54-205ENST00000578415 SBNO1A3KN83 1393 aa31.12■■■□□ 2.57
TSEN54-205ENST00000578415 DLC1Q96QB1 1528 aa31.1■■■□□ 2.57
TSEN54-205ENST00000578415 HAP1P54257 671 aaPredicted RBP31.09■■■□□ 2.57
TSEN54-205ENST00000578415 PLEKHG5O94827 1062 aa31.07■■■□□ 2.56
TSEN54-205ENST00000578415 VPS72Q15906 364 aa31.07■■■□□ 2.56
TSEN54-205ENST00000578415 ANKARQ7Z5J8 1434 aa31.07■■■□□ 2.56
TSEN54-205ENST00000578415 ARHGEF10O15013 1369 aa31.06■■■□□ 2.56
TSEN54-205ENST00000578415 POGKQ9P215 609 aa31.06■■■□□ 2.56
TSEN54-205ENST00000578415 BLMP54132 1417 aaPredicted RBP31.06■■■□□ 2.56
TSEN54-205ENST00000578415 ADGRB1O14514 1584 aa31.05■■■□□ 2.56
TSEN54-205ENST00000578415 LMOD2Q6P5Q4 547 aa31.05■■■□□ 2.56
TSEN54-205ENST00000578415 SEPT12Q8IYM1 358 aa31.05■■■□□ 2.56
TSEN54-205ENST00000578415 PMFBP1Q8TBY8 1022 aa31.05■■■□□ 2.56
TSEN54-205ENST00000578415 ADGRB2O60241 1585 aa31.04■■■□□ 2.56
TSEN54-205ENST00000578415 ABCA3Q99758 1704 aa31.04■■■□□ 2.56
TSEN54-205ENST00000578415 RAB3GAP2Q9H2M9 1393 aa31.04■■■□□ 2.56
TSEN54-205ENST00000578415 PLCH1Q4KWH8 1693 aa31.02■■■□□ 2.56
TSEN54-205ENST00000578415 NWD2Q9ULI1 1742 aa31.01■■■□□ 2.55
TSEN54-205ENST00000578415 ONECUT3O60422 494 aaPredicted RBP31■■■□□ 2.55
TSEN54-205ENST00000578415 BRWD3Q6RI45 1802 aa31■■■□□ 2.55
TSEN54-205ENST00000578415 FAM83GA6ND36 823 aa30.99■■■□□ 2.55
TSEN54-205ENST00000578415 HIRIP3Q9BW71 556 aaPredicted RBP30.99■■■□□ 2.55
TSEN54-205ENST00000578415 TRAK1Q9UPV9 953 aa30.99■■■□□ 2.55
TSEN54-205ENST00000578415 CCDC9Q9Y3X0 531 aaKnown RBP30.98■■■□□ 2.55
TSEN54-205ENST00000578415 DEFB132Q7Z7B7 95 aa30.97■■■□□ 2.55
TSEN54-205ENST00000578415 PRR36Q9H6K5 1346 aa30.97■■■□□ 2.55
TSEN54-205ENST00000578415 TRPM3Q9HCF6 1732 aaPredicted RBP30.95■■■□□ 2.54
TSEN54-205ENST00000578415 MINK1Q8N4C8 1332 aaPredicted RBP30.95■■■□□ 2.54
TSEN54-205ENST00000578415 KRT27Q7Z3Y8 459 aa30.93■■■□□ 2.54
TSEN54-205ENST00000578415 KDM2AQ9Y2K7 1162 aa30.92■■■□□ 2.54
TSEN54-205ENST00000578415 TULP4Q9NRJ4 1543 aa30.92■■■□□ 2.54
TSEN54-205ENST00000578415 EIF3AQ14152 1382 aaKnown RBP30.91■■■□□ 2.54
TSEN54-205ENST00000578415 GPRASP1Q5JY77 1395 aa30.91■■■□□ 2.54
TSEN54-205ENST00000578415 DCAF11Q8TEB1 546 aa30.9■■■□□ 2.54
TSEN54-205ENST00000578415 ALS2Q96Q42 1657 aa30.9■■■□□ 2.54
TSEN54-205ENST00000578415 NRAPQ86VF7 1730 aa30.9■■■□□ 2.54
TSEN54-205ENST00000578415 WASLO00401 505 aaPredicted RBP30.89■■■□□ 2.54
TSEN54-205ENST00000578415 SF3B2Q13435 895 aaKnown RBP30.89■■■□□ 2.54
TSEN54-205ENST00000578415 BTG4Q9NY30 223 aa30.88■■■□□ 2.53
TSEN54-205ENST00000578415 FAM98CQ17RN3 349 aaKnown RBP30.86■■■□□ 2.53
TSEN54-205ENST00000578415 A0A0G2JS52 829 aa30.83■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms