RNA–Protein interactions for RNA: ENST00000578044.5

SMARCE1-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,184 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-213ENST00000578044 SOS2Q07890 1332 aaPredicted RBP21.45■■□□□ 1.02
SMARCE1-213ENST00000578044 C14orf93Q9H972 538 aaKnown RBP21.44■■□□□ 1.02
SMARCE1-213ENST00000578044 YTHDC2Q9H6S0 1430 aaKnown RBP21.41■■□□□ 1.02
SMARCE1-213ENST00000578044 PNPLA6Q8IY17 1366 aa21.41■■□□□ 1.02
SMARCE1-213ENST00000578044 MEX3CQ5U5Q3 659 aaKnown RBP21.38■■□□□ 1.01
SMARCE1-213ENST00000578044 CDK12Q9NYV4 1490 aaPredicted RBP21.38■■□□□ 1.01
SMARCE1-213ENST00000578044 DHX57Q6P158 1386 aaKnown RBP21.37■■□□□ 1.01
SMARCE1-213ENST00000578044 NPHP3Q7Z494 1330 aa21.37■■□□□ 1.01
SMARCE1-213ENST00000578044 COL22A1Q8NFW1 1626 aaPredicted RBP21.37■■□□□ 1.01
SMARCE1-213ENST00000578044 DLC1Q96QB1 1528 aa21.36■■□□□ 1.01
SMARCE1-213ENST00000578044 ORAI2Q96SN7 254 aa21.36■■□□□ 1.01
SMARCE1-213ENST00000578044 FMN2Q9NZ56 1722 aa21.34■■□□□ 1.01
SMARCE1-213ENST00000578044 KIF1AQ12756 1690 aa21.33■■□□□ 1
SMARCE1-213ENST00000578044 TMEM132EQ6IEE7 984 aa21.32■■□□□ 1
SMARCE1-213ENST00000578044 WAPLQ7Z5K2 1190 aa21.32■■□□□ 1
SMARCE1-213ENST00000578044 PXDNQ92626 1479 aa21.32■■□□□ 1
SMARCE1-213ENST00000578044 STK26Q9P289 416 aa21.31■■□□□ 1
SMARCE1-213ENST00000578044 DDX17Q92841 729 aaKnown RBP21.3■■□□□ 1
SMARCE1-213ENST00000578044 ADGRB1O14514 1584 aa21.3■■□□□ 1
SMARCE1-213ENST00000578044 ESCO1Q5FWF5 840 aa21.29■■□□□ 1
SMARCE1-213ENST00000578044 CFAP70Q5T0N1 1121 aa21.29■■□□□ 1
SMARCE1-213ENST00000578044 AFF2P51816 1311 aa21.29■■□□□ 1
SMARCE1-213ENST00000578044 PLEKHH1Q9ULM0 1364 aa21.28■■□□□ 1
SMARCE1-213ENST00000578044 NUTM2BA6NNL0 878 aaPredicted RBP21.28■■□□□ 1
SMARCE1-213ENST00000578044 NUTM2EB1AL46 878 aaPredicted RBP21.28■■□□□ 1
SMARCE1-213ENST00000578044 RXRBP28702 533 aa21.28■■□□□ 1
SMARCE1-213ENST00000578044 NUTM2AQ8IVF1 878 aaPredicted RBP21.28■■□□□ 1
SMARCE1-213ENST00000578044 ADGRB2O60241 1585 aa21.27■■□□□ 1
SMARCE1-213ENST00000578044 ANKARQ7Z5J8 1434 aa21.25■□□□□ 0.99
SMARCE1-213ENST00000578044 FNBP4Q8N3X1 1017 aaPredicted RBP21.25■□□□□ 0.99
SMARCE1-213ENST00000578044 MARF1Q9Y4F3 1742 aaKnown RBP21.24■□□□□ 0.99
SMARCE1-213ENST00000578044 FOXO3O43524 673 aa21.23■□□□□ 0.99
SMARCE1-213ENST00000578044 RBM6P78332 1123 aaKnown RBP21.23■□□□□ 0.99
SMARCE1-213ENST00000578044 EIF3AQ14152 1382 aaKnown RBP21.22■□□□□ 0.99
SMARCE1-213ENST00000578044 C8orf37Q96NL8 207 aa21.21■□□□□ 0.99
SMARCE1-213ENST00000578044 DCAF11Q8TEB1 546 aa21.2■□□□□ 0.98
SMARCE1-213ENST00000578044 NGLY1Q96IV0 654 aa21.2■□□□□ 0.98
SMARCE1-213ENST00000578044 PRAM1Q96QH2 718 aa21.2■□□□□ 0.98
SMARCE1-213ENST00000578044 SPATA31A3Q5VYP0 1347 aa21.2■□□□□ 0.98
SMARCE1-213ENST00000578044 KIAA1210Q9ULL0 1709 aa21.2■□□□□ 0.98
SMARCE1-213ENST00000578044 RGPD8O14715 1765 aaPredicted RBP21.2■□□□□ 0.98
SMARCE1-213ENST00000578044 QTRT2Q9H974 415 aaKnown RBP21.19■□□□□ 0.98
SMARCE1-213ENST00000578044 SBNO1A3KN83 1393 aa21.18■□□□□ 0.98
SMARCE1-213ENST00000578044 PSME1Q06323 249 aa21.17■□□□□ 0.98
SMARCE1-213ENST00000578044 POGKQ9P215 609 aa21.17■□□□□ 0.98
SMARCE1-213ENST00000578044 TRPC5Q9UL62 973 aaPredicted RBP21.17■□□□□ 0.98
SMARCE1-213ENST00000578044 PHF8Q9UPP1 1060 aa21.17■□□□□ 0.98
SMARCE1-213ENST00000578044 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.15■□□□□ 0.98
SMARCE1-213ENST00000578044 ADAMTS2O95450 1211 aa21.15■□□□□ 0.98
SMARCE1-213ENST00000578044 ATRNO75882 1429 aa21.14■□□□□ 0.98
SMARCE1-213ENST00000578044 KRT28Q7Z3Y7 464 aa21.14■□□□□ 0.97
SMARCE1-213ENST00000578044 USP21Q9UK80 565 aa21.14■□□□□ 0.97
SMARCE1-213ENST00000578044 USP32Q8NFA0 1604 aa21.14■□□□□ 0.97
SMARCE1-213ENST00000578044 TNS3Q68CZ2 1445 aa21.13■□□□□ 0.97
SMARCE1-213ENST00000578044 ARHGEF10O15013 1369 aa21.13■□□□□ 0.97
SMARCE1-213ENST00000578044 UPF1Q92900 1129 aaKnown RBP eCLIP21.13■□□□□ 0.97
SMARCE1-213ENST00000578044 TULP4Q9NRJ4 1543 aa21.13■□□□□ 0.97
SMARCE1-213ENST00000578044 NUTM2FA1L443 756 aa21.12■□□□□ 0.97
SMARCE1-213ENST00000578044 BCL9LQ86UU0 1499 aa21.12■□□□□ 0.97
SMARCE1-213ENST00000578044 ARHGEF28Q8N1W1 1705 aaKnown RBP21.12■□□□□ 0.97
SMARCE1-213ENST00000578044 RGS12O14924 1447 aa21.12■□□□□ 0.97
SMARCE1-213ENST00000578044 TRAK1Q9UPV9 953 aa21.11■□□□□ 0.97
SMARCE1-213ENST00000578044 KDM2AQ9Y2K7 1162 aa21.11■□□□□ 0.97
SMARCE1-213ENST00000578044 SLIT2O94813 1529 aa21.09■□□□□ 0.97
SMARCE1-213ENST00000578044 WASLO00401 505 aaPredicted RBP21.09■□□□□ 0.97
SMARCE1-213ENST00000578044 XPCQ01831 940 aaPredicted RBP21.08■□□□□ 0.97
SMARCE1-213ENST00000578044 ITSN1Q15811 1721 aa21.07■□□□□ 0.96
SMARCE1-213ENST00000578044 TRPM3Q9HCF6 1732 aaPredicted RBP21.07■□□□□ 0.96
SMARCE1-213ENST00000578044 NWD2Q9ULI1 1742 aa21.07■□□□□ 0.96
SMARCE1-213ENST00000578044 SAFB2Q14151 953 aaKnown RBP eCLIP21.06■□□□□ 0.96
SMARCE1-213ENST00000578044 EP400Q96L91 3159 aa21.05■□□□□ 0.96
SMARCE1-213ENST00000578044 GPRASP1Q5JY77 1395 aa21.05■□□□□ 0.96
SMARCE1-213ENST00000578044 ALS2Q96Q42 1657 aa21.05■□□□□ 0.96
SMARCE1-213ENST00000578044 ABCA3Q99758 1704 aa21.04■□□□□ 0.96
SMARCE1-213ENST00000578044 ATAD2Q6PL18 1390 aa21.03■□□□□ 0.96
SMARCE1-213ENST00000578044 UNC5CLQ8IV45 518 aa21.03■□□□□ 0.96
SMARCE1-213ENST00000578044 GJD4Q96KN9 370 aaPredicted RBP21.03■□□□□ 0.96
SMARCE1-213ENST00000578044 MINK1Q8N4C8 1332 aaPredicted RBP21.03■□□□□ 0.96
SMARCE1-213ENST00000578044 PRR36Q9H6K5 1346 aa21.03■□□□□ 0.96
SMARCE1-213ENST00000578044 ATP7BP35670 1465 aa21.01■□□□□ 0.95
SMARCE1-213ENST00000578044 HIRIP3Q9BW71 556 aaPredicted RBP20.99■□□□□ 0.95
SMARCE1-213ENST00000578044 CCDC125Q86Z20 511 aa20.98■□□□□ 0.95
SMARCE1-213ENST00000578044 PMFBP1Q8TBY8 1022 aa20.98■□□□□ 0.95
SMARCE1-213ENST00000578044 POLR3AO14802 1390 aaPredicted RBP20.97■□□□□ 0.95
SMARCE1-213ENST00000578044 TOPAZ1Q8N9V7 1692 aa20.97■□□□□ 0.95
SMARCE1-213ENST00000578044 ONECUT3O60422 494 aaPredicted RBP20.97■□□□□ 0.95
SMARCE1-213ENST00000578044 VPS72Q15906 364 aa20.97■□□□□ 0.95
SMARCE1-213ENST00000578044 PLCH1Q4KWH8 1693 aa20.96■□□□□ 0.95
SMARCE1-213ENST00000578044 NUDT16Q96DE0 195 aaKnown RBP20.96■□□□□ 0.95
SMARCE1-213ENST00000578044 CCDC61Q9Y6R9 512 aa20.96■□□□□ 0.95
SMARCE1-213ENST00000578044 CRYBG1Q9Y4K1 1723 aa20.95■□□□□ 0.94
SMARCE1-213ENST00000578044 RALGAPBQ86X10 1494 aa20.95■□□□□ 0.94
SMARCE1-213ENST00000578044 GLI3P10071 1580 aa20.95■□□□□ 0.94
SMARCE1-213ENST00000578044 PLEKHG3A1L390 1219 aa20.95■□□□□ 0.94
SMARCE1-213ENST00000578044 BRD4O60885 1362 aaPredicted RBP20.95■□□□□ 0.94
SMARCE1-213ENST00000578044 HAP1P54257 671 aaPredicted RBP20.94■□□□□ 0.94
SMARCE1-213ENST00000578044 NGDNQ8NEJ9 315 aaKnown RBP20.94■□□□□ 0.94
SMARCE1-213ENST00000578044 COL14A1Q05707 1796 aaKnown RBP20.93■□□□□ 0.94
SMARCE1-213ENST00000578044 CDK19Q9BWU1 502 aa20.93■□□□□ 0.94
SMARCE1-213ENST00000578044 NBPF1Q3BBV0 1214 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms