RNA–Protein interactions for RNA: ENST00000576708.5

NUP88-212, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-212ENST00000576708 NPATQ14207 1427 aa9.86□□□□□ -0.83
NUP88-212ENST00000576708 NBR1Q14596 966 aa9.86□□□□□ -0.83
NUP88-212ENST00000576708 VPS8Q8N3P4 1428 aa9.86□□□□□ -0.83
NUP88-212ENST00000576708 UPF1Q92900 1129 aaKnown RBP eCLIP9.86□□□□□ -0.83
NUP88-212ENST00000576708 CCDC141Q6ZP82 1450 aa9.85□□□□□ -0.83
NUP88-212ENST00000576708 LRRC9Q6ZRR7 1453 aa9.85□□□□□ -0.83
NUP88-212ENST00000576708 FBXO31Q5XUX0 539 aaPredicted RBP9.85□□□□□ -0.83
NUP88-212ENST00000576708 ARHGEF1Q92888 912 aaKnown RBP9.84□□□□□ -0.83
NUP88-212ENST00000576708 MYO3AQ8NEV4 1616 aa9.84□□□□□ -0.83
NUP88-212ENST00000576708 DPYSL4O14531 572 aa9.83□□□□□ -0.84
NUP88-212ENST00000576708 LTBP4Q8N2S1 1624 aa9.82□□□□□ -0.84
NUP88-212ENST00000576708 TSPY4P0CV99 314 aa9.82□□□□□ -0.84
NUP88-212ENST00000576708 TSPY10P0CW01 314 aa9.82□□□□□ -0.84
NUP88-212ENST00000576708 RSPH4AQ5TD94 716 aa9.82□□□□□ -0.84
NUP88-212ENST00000576708 CEP170BQ9Y4F5 1589 aaPredicted RBP9.82□□□□□ -0.84
NUP88-212ENST00000576708 ZNF335Q9H4Z2 1342 aaPredicted RBP9.82□□□□□ -0.84
NUP88-212ENST00000576708 ARHGEF5Q12774 1597 aa9.81□□□□□ -0.84
NUP88-212ENST00000576708 WASHC2CQ9Y4E1 1318 aa9.81□□□□□ -0.84
NUP88-212ENST00000576708 ZNF142P52746 1687 aaPredicted RBP9.8□□□□□ -0.84
NUP88-212ENST00000576708 TNRQ92752 1358 aa9.79□□□□□ -0.84
NUP88-212ENST00000576708 MAP3K9P80192 1104 aa9.79□□□□□ -0.84
NUP88-212ENST00000576708 A2ML1A8K2U0 1454 aa9.79□□□□□ -0.84
NUP88-212ENST00000576708 TCOF1Q13428 1488 aaKnown RBP9.79□□□□□ -0.84
NUP88-212ENST00000576708 DNMT1P26358 1616 aaKnown RBP9.78□□□□□ -0.84
NUP88-212ENST00000576708 KDM5DQ9BY66 1539 aa9.78□□□□□ -0.84
NUP88-212ENST00000576708 ST18O60284 1047 aa9.78□□□□□ -0.84
NUP88-212ENST00000576708 MYOM3Q5VTT5 1437 aa9.78□□□□□ -0.84
NUP88-212ENST00000576708 PZPP20742 1482 aa9.78□□□□□ -0.84
NUP88-212ENST00000576708 PLA2R1Q13018 1463 aa9.78□□□□□ -0.84
NUP88-212ENST00000576708 MAP3K1Q13233 1512 aa9.77□□□□□ -0.84
NUP88-212ENST00000576708 SEMA3EO15041 775 aa9.77□□□□□ -0.85
NUP88-212ENST00000576708 OXER1Q8TDS5 423 aa9.77□□□□□ -0.85
NUP88-212ENST00000576708 MAST1Q9Y2H9 1570 aa9.76□□□□□ -0.85
NUP88-212ENST00000576708 ARIH1Q9Y4X5 557 aaPredicted RBP9.76□□□□□ -0.85
NUP88-212ENST00000576708 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.75□□□□□ -0.85
NUP88-212ENST00000576708 MIA2Q96PC5 1412 aa9.75□□□□□ -0.85
NUP88-212ENST00000576708 HOXB3P14651 431 aaPredicted RBP9.75□□□□□ -0.85
NUP88-212ENST00000576708 ABCC3O15438 1527 aa9.75□□□□□ -0.85
NUP88-212ENST00000576708 UBAP1LF5GYI3 381 aa9.74□□□□□ -0.85
NUP88-212ENST00000576708 PTCD2Q8WV60 388 aaKnown RBP9.74□□□□□ -0.85
NUP88-212ENST00000576708 RRP7BPQ9NSQ0 103 aa9.74□□□□□ -0.85
NUP88-212ENST00000576708 NEURL4Q96JN8 1562 aa9.74□□□□□ -0.85
NUP88-212ENST00000576708 MROH1Q8NDA8 1641 aa9.74□□□□□ -0.85
NUP88-212ENST00000576708 RNF17Q9BXT8 1623 aaKnown RBP9.74□□□□□ -0.85
NUP88-212ENST00000576708 ABCC5O15440 1437 aa9.73□□□□□ -0.85
NUP88-212ENST00000576708 FAM135AQ9P2D6 1515 aa9.73□□□□□ -0.85
NUP88-212ENST00000576708 SLC34A2O95436 690 aa9.73□□□□□ -0.85
NUP88-212ENST00000576708 CHIC2Q9UKJ5 165 aa9.73□□□□□ -0.85
NUP88-212ENST00000576708 PCDHGA4Q9Y5G9 962 aa9.73□□□□□ -0.85
NUP88-212ENST00000576708 DISP3Q9P2K9 1392 aa9.73□□□□□ -0.85
NUP88-212ENST00000576708 IQSEC2Q5JU85 1478 aa9.72□□□□□ -0.85
NUP88-212ENST00000576708 PTPN23Q9H3S7 1636 aa9.72□□□□□ -0.85
NUP88-212ENST00000576708 DOK7Q18PE1 504 aa9.72□□□□□ -0.85
NUP88-212ENST00000576708 ANKLE2Q86XL3 938 aa9.72□□□□□ -0.85
NUP88-212ENST00000576708 THEMISQ8N1K5 641 aaPredicted RBP9.72□□□□□ -0.85
NUP88-212ENST00000576708 KHSRPQ92945 711 aaKnown RBP eCLIP9.72□□□□□ -0.85
NUP88-212ENST00000576708 KIF15Q9NS87 1388 aa9.72□□□□□ -0.85
NUP88-212ENST00000576708 UGGT1Q9NYU2 1555 aa9.71□□□□□ -0.85
NUP88-212ENST00000576708 CEP152O94986 1710 aa9.71□□□□□ -0.85
NUP88-212ENST00000576708 TBC1D12O60347 775 aa9.71□□□□□ -0.86
NUP88-212ENST00000576708 EVI5O60447 810 aa9.71□□□□□ -0.86
NUP88-212ENST00000576708 MLLT3P42568 568 aaPredicted RBP9.71□□□□□ -0.86
NUP88-212ENST00000576708 PDIA6Q15084 440 aa9.71□□□□□ -0.86
NUP88-212ENST00000576708 ILDR2Q71H61 639 aa9.71□□□□□ -0.86
NUP88-212ENST00000576708 ERVK-7P63135 1459 aa9.71□□□□□ -0.86
NUP88-212ENST00000576708 NLRP1Q9C000 1473 aa9.71□□□□□ -0.86
NUP88-212ENST00000576708 DUOX2Q9NRD8 1548 aa9.71□□□□□ -0.86
NUP88-212ENST00000576708 SPATA31D1Q6ZQQ2 1576 aa9.71□□□□□ -0.86
NUP88-212ENST00000576708 EIF2AK4Q9P2K8 1649 aaKnown RBP9.71□□□□□ -0.86
NUP88-212ENST00000576708 POLR1AO95602 1720 aaPredicted RBP9.7□□□□□ -0.86
NUP88-212ENST00000576708 MMRN1Q13201 1228 aa9.7□□□□□ -0.86
NUP88-212ENST00000576708 ARSIQ5FYB1 569 aa9.7□□□□□ -0.86
NUP88-212ENST00000576708 ZNF710Q8N1W2 664 aa9.7□□□□□ -0.86
NUP88-212ENST00000576708 DAPK1P53355 1430 aa9.7□□□□□ -0.86
NUP88-212ENST00000576708 FGD6Q6ZV73 1430 aa9.7□□□□□ -0.86
NUP88-212ENST00000576708 SPDYE16A6NNV3 312 aaPredicted RBP9.69□□□□□ -0.86
NUP88-212ENST00000576708 CROCC2H7BZ55 1655 aa9.69□□□□□ -0.86
NUP88-212ENST00000576708 NPHP4O75161 1426 aaPredicted RBP9.69□□□□□ -0.86
NUP88-212ENST00000576708 ZC3H13Q5T200 1668 aaKnown RBP9.69□□□□□ -0.86
NUP88-212ENST00000576708 SHANK2Q9UPX8 1470 aa9.69□□□□□ -0.86
NUP88-212ENST00000576708 CFAP65Q6ZU64 1925 aaKnown RBP9.68□□□□□ -0.86
NUP88-212ENST00000576708 VWDEQ8N2E2 1590 aa9.68□□□□□ -0.86
NUP88-212ENST00000576708 TESPA1A2RU30 521 aaPredicted RBP9.68□□□□□ -0.86
NUP88-212ENST00000576708 PIP4K2BP78356 416 aa9.68□□□□□ -0.86
NUP88-212ENST00000576708 SNPHO15079 494 aa9.67□□□□□ -0.86
NUP88-212ENST00000576708 NUDT7P0C024 238 aa9.67□□□□□ -0.86
NUP88-212ENST00000576708 SPNS2Q8IVW8 549 aa9.67□□□□□ -0.86
NUP88-212ENST00000576708 MED14O60244 1454 aa9.66□□□□□ -0.86
NUP88-212ENST00000576708 ERBINQ96RT1 1412 aa9.66□□□□□ -0.86
NUP88-212ENST00000576708 GRXCR2A6NFK2 248 aa9.66□□□□□ -0.86
NUP88-212ENST00000576708 RIMBP2O15034 1052 aa9.66□□□□□ -0.86
NUP88-212ENST00000576708 LTKP29376 864 aa9.66□□□□□ -0.86
NUP88-212ENST00000576708 FAM50AQ14320 339 aaKnown RBP9.66□□□□□ -0.86
NUP88-212ENST00000576708 DDX12PQ92771 950 aa9.66□□□□□ -0.86
NUP88-212ENST00000576708 DEPDC5O75140 1603 aa9.66□□□□□ -0.86
NUP88-212ENST00000576708 CPS1P31327 1500 aa9.66□□□□□ -0.86
NUP88-212ENST00000576708 PRDM15P57071 1507 aaPredicted RBP9.66□□□□□ -0.86
NUP88-212ENST00000576708 UBR1Q8IWV7 1749 aa9.65□□□□□ -0.86
NUP88-212ENST00000576708 ANKRD30AQ9BXX3 1397 aa9.65□□□□□ -0.86
NUP88-212ENST00000576708 HSPA1LP34931 641 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms