RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 ABCC11Q96J66 1382 aa15.83■□□□□ 0.12
CHD3-216ENST00000573936 PTCH1Q13635 1447 aa15.83■□□□□ 0.12
CHD3-216ENST00000573936 ASXL1Q8IXJ9 1541 aa15.83■□□□□ 0.12
CHD3-216ENST00000573936 NALCNQ8IZF0 1738 aa15.82■□□□□ 0.12
CHD3-216ENST00000573936 RXRBP28702 533 aa15.82■□□□□ 0.12
CHD3-216ENST00000573936 SIRT1Q96EB6 747 aa15.82■□□□□ 0.12
CHD3-216ENST00000573936 STK26Q9P289 416 aa15.82■□□□□ 0.12
CHD3-216ENST00000573936 NUTM2BA6NNL0 878 aaPredicted RBP15.81■□□□□ 0.12
CHD3-216ENST00000573936 NUTM2EB1AL46 878 aaPredicted RBP15.81■□□□□ 0.12
CHD3-216ENST00000573936 BRINP3Q76B58 766 aa15.81■□□□□ 0.12
CHD3-216ENST00000573936 NUTM2AQ8IVF1 878 aaPredicted RBP15.81■□□□□ 0.12
CHD3-216ENST00000573936 YTHDC2Q9H6S0 1430 aaKnown RBP15.81■□□□□ 0.12
CHD3-216ENST00000573936 NHSL1Q5SYE7 1610 aa15.8■□□□□ 0.12
CHD3-216ENST00000573936 MST1RQ04912 1400 aa15.8■□□□□ 0.12
CHD3-216ENST00000573936 ADGRL3Q9HAR2 1447 aa15.8■□□□□ 0.12
CHD3-216ENST00000573936 UPF1Q92900 1129 aaKnown RBP eCLIP15.8■□□□□ 0.12
CHD3-216ENST00000573936 TIMELESSQ9UNS1 1208 aa15.8■□□□□ 0.12
CHD3-216ENST00000573936 TECPR2O15040 1411 aa15.79■□□□□ 0.12
CHD3-216ENST00000573936 ROBO2Q9HCK4 1378 aa15.79■□□□□ 0.12
CHD3-216ENST00000573936 KIAA1210Q9ULL0 1709 aa15.77■□□□□ 0.11
CHD3-216ENST00000573936 ADGRB1O14514 1584 aa15.76■□□□□ 0.11
CHD3-216ENST00000573936 KNDC1Q76NI1 1749 aa15.75■□□□□ 0.11
CHD3-216ENST00000573936 WAPLQ7Z5K2 1190 aa15.75■□□□□ 0.11
CHD3-216ENST00000573936 POGKQ9P215 609 aa15.75■□□□□ 0.11
CHD3-216ENST00000573936 TRAK1Q9UPV9 953 aa15.75■□□□□ 0.11
CHD3-216ENST00000573936 DLC1Q96QB1 1528 aa15.74■□□□□ 0.11
CHD3-216ENST00000573936 NBPF1Q3BBV0 1214 aa15.73■□□□□ 0.11
CHD3-216ENST00000573936 PRAM1Q96QH2 718 aa15.73■□□□□ 0.11
CHD3-216ENST00000573936 DDX17Q92841 729 aaKnown RBP15.72■□□□□ 0.11
CHD3-216ENST00000573936 LRRC59Q96AG4 307 aaKnown RBP15.72■□□□□ 0.11
CHD3-216ENST00000573936 AFF2P51816 1311 aa15.71■□□□□ 0.11
CHD3-216ENST00000573936 NBPF8Q3BBV2 869 aa15.71■□□□□ 0.11
CHD3-216ENST00000573936 ROCK2O75116 1388 aaKnown RBP15.71■□□□□ 0.11
CHD3-216ENST00000573936 C1orf167Q5SNV9 1468 aa15.71■□□□□ 0.1
CHD3-216ENST00000573936 QTRT2Q9H974 415 aaKnown RBP15.7■□□□□ 0.1
CHD3-216ENST00000573936 PLEKHH1Q9ULM0 1364 aa15.7■□□□□ 0.1
CHD3-216ENST00000573936 C8orf37Q96NL8 207 aa15.69■□□□□ 0.1
CHD3-216ENST00000573936 PNPLA6Q8IY17 1366 aa15.69■□□□□ 0.1
CHD3-216ENST00000573936 TRPM1Q7Z4N2 1603 aa15.68■□□□□ 0.1
CHD3-216ENST00000573936 SAFB2Q14151 953 aaKnown RBP eCLIP15.68■□□□□ 0.1
CHD3-216ENST00000573936 CDK12Q9NYV4 1490 aaPredicted RBP15.67■□□□□ 0.1
CHD3-216ENST00000573936 GPRASP1Q5JY77 1395 aa15.66■□□□□ 0.1
CHD3-216ENST00000573936 RBM6P78332 1123 aaKnown RBP15.66■□□□□ 0.1
CHD3-216ENST00000573936 NGLY1Q96IV0 654 aa15.66■□□□□ 0.1
CHD3-216ENST00000573936 CARD11Q9BXL7 1154 aa15.66■□□□□ 0.1
CHD3-216ENST00000573936 CDC42BPGQ6DT37 1551 aa15.65■□□□□ 0.1
CHD3-216ENST00000573936 RALGAPBQ86X10 1494 aa15.65■□□□□ 0.1
CHD3-216ENST00000573936 EIF3AQ14152 1382 aaKnown RBP15.64■□□□□ 0.09
CHD3-216ENST00000573936 CENPJQ9HC77 1338 aaPredicted RBP15.64■□□□□ 0.09
CHD3-216ENST00000573936 ORAI2Q96SN7 254 aa15.63■□□□□ 0.09
CHD3-216ENST00000573936 MINK1Q8N4C8 1332 aaPredicted RBP15.63■□□□□ 0.09
CHD3-216ENST00000573936 ARHGEF28Q8N1W1 1705 aaKnown RBP15.63■□□□□ 0.09
CHD3-216ENST00000573936 ADAMTS2O95450 1211 aa15.62■□□□□ 0.09
CHD3-216ENST00000573936 WASLO00401 505 aaPredicted RBP15.61■□□□□ 0.09
CHD3-216ENST00000573936 HIRIP3Q9BW71 556 aaPredicted RBP15.61■□□□□ 0.09
CHD3-216ENST00000573936 RGS12O14924 1447 aa15.6■□□□□ 0.09
CHD3-216ENST00000573936 ADGRB2O60241 1585 aa15.6■□□□□ 0.09
CHD3-216ENST00000573936 SOS2Q07890 1332 aaPredicted RBP15.6■□□□□ 0.09
CHD3-216ENST00000573936 EP400Q96L91 3159 aa15.59■□□□□ 0.09
CHD3-216ENST00000573936 ESCO1Q5FWF5 840 aa15.59■□□□□ 0.09
CHD3-216ENST00000573936 SRCAPQ6ZRS2 3230 aa15.59■□□□□ 0.09
CHD3-216ENST00000573936 COL22A1Q8NFW1 1626 aaPredicted RBP15.58■□□□□ 0.09
CHD3-216ENST00000573936 NUTM2FA1L443 756 aa15.58■□□□□ 0.08
CHD3-216ENST00000573936 USP21Q9UK80 565 aa15.58■□□□□ 0.08
CHD3-216ENST00000573936 ANKARQ7Z5J8 1434 aa15.58■□□□□ 0.08
CHD3-216ENST00000573936 SLC24A1O60721 1099 aa15.57■□□□□ 0.08
CHD3-216ENST00000573936 CDK19Q9BWU1 502 aa15.57■□□□□ 0.08
CHD3-216ENST00000573936 ATAD2Q6PL18 1390 aa15.57■□□□□ 0.08
CHD3-216ENST00000573936 PXDNQ92626 1479 aa15.57■□□□□ 0.08
CHD3-216ENST00000573936 FMN2Q9NZ56 1722 aa15.57■□□□□ 0.08
CHD3-216ENST00000573936 TRPC5Q9UL62 973 aaPredicted RBP15.56■□□□□ 0.08
CHD3-216ENST00000573936 NPHP3Q7Z494 1330 aa15.55■□□□□ 0.08
CHD3-216ENST00000573936 EVC2Q86UK5 1308 aa15.55■□□□□ 0.08
CHD3-216ENST00000573936 ZRANB1Q9UGI0 708 aa15.55■□□□□ 0.08
CHD3-216ENST00000573936 TULP4Q9NRJ4 1543 aa15.54■□□□□ 0.08
CHD3-216ENST00000573936 XPCQ01831 940 aaPredicted RBP15.54■□□□□ 0.08
CHD3-216ENST00000573936 PHF8Q9UPP1 1060 aa15.54■□□□□ 0.08
CHD3-216ENST00000573936 SBNO2Q9Y2G9 1366 aa15.53■□□□□ 0.08
CHD3-216ENST00000573936 SRPK2P78362 688 aaKnown RBP15.53■□□□□ 0.08
CHD3-216ENST00000573936 NUDT16Q96DE0 195 aaKnown RBP15.53■□□□□ 0.08
CHD3-216ENST00000573936 MARF1Q9Y4F3 1742 aaKnown RBP15.52■□□□□ 0.08
CHD3-216ENST00000573936 QRICH2Q9H0J4 1663 aa15.52■□□□□ 0.08
CHD3-216ENST00000573936 KIF1AQ12756 1690 aa15.51■□□□□ 0.07
CHD3-216ENST00000573936 ST20-MTHFSA0A0A6YYL1 179 aa15.51■□□□□ 0.07
CHD3-216ENST00000573936 FOXO3O43524 673 aa15.51■□□□□ 0.07
CHD3-216ENST00000573936 CCDC61Q9Y6R9 512 aa15.51■□□□□ 0.07
CHD3-216ENST00000573936 USP47Q96K76 1375 aa15.5■□□□□ 0.07
CHD3-216ENST00000573936 PRR36Q9H6K5 1346 aa15.5■□□□□ 0.07
CHD3-216ENST00000573936 PSME1Q06323 249 aa15.5■□□□□ 0.07
CHD3-216ENST00000573936 ATRNO75882 1429 aa15.5■□□□□ 0.07
CHD3-216ENST00000573936 CCDC125Q86Z20 511 aa15.49■□□□□ 0.07
CHD3-216ENST00000573936 FNBP4Q8N3X1 1017 aaPredicted RBP15.49■□□□□ 0.07
CHD3-216ENST00000573936 PMFBP1Q8TBY8 1022 aa15.49■□□□□ 0.07
CHD3-216ENST00000573936 CABP2Q9NPB3 220 aa15.49■□□□□ 0.07
CHD3-216ENST00000573936 KRT28Q7Z3Y7 464 aa15.48■□□□□ 0.07
CHD3-216ENST00000573936 PUS7Q96PZ0 661 aaKnown RBP15.48■□□□□ 0.07
CHD3-216ENST00000573936 ATP7BP35670 1465 aa15.47■□□□□ 0.07
CHD3-216ENST00000573936 USP32Q8NFA0 1604 aa15.47■□□□□ 0.07
CHD3-216ENST00000573936 PLEKHG3A1L390 1219 aa15.47■□□□□ 0.07
CHD3-216ENST00000573936 NGDNQ8NEJ9 315 aaKnown RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms