RNA–Protein interactions for RNA: ENST00000573395.1

RAB40B-208, Transcript of RAB40B, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40B, Length 517 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40B-208ENST00000573395 TECPR2O15040 1411 aa23.87■■□□□ 1.41
RAB40B-208ENST00000573395 C14orf93Q9H972 538 aaKnown RBP23.87■■□□□ 1.41
RAB40B-208ENST00000573395 MYOM2P54296 1465 aa23.87■■□□□ 1.41
RAB40B-208ENST00000573395 YTHDC2Q9H6S0 1430 aaKnown RBP23.86■■□□□ 1.41
RAB40B-208ENST00000573395 ESCO1Q5FWF5 840 aa23.86■■□□□ 1.41
RAB40B-208ENST00000573395 ZNF772Q68DY9 489 aaPredicted RBP23.86■■□□□ 1.41
RAB40B-208ENST00000573395 DHX57Q6P158 1386 aaKnown RBP23.86■■□□□ 1.41
RAB40B-208ENST00000573395 CFAP70Q5T0N1 1121 aa23.85■■□□□ 1.41
RAB40B-208ENST00000573395 CDC42BPGQ6DT37 1551 aa23.84■■□□□ 1.41
RAB40B-208ENST00000573395 NRXN1Q9ULB1 1477 aa23.82■■□□□ 1.4
RAB40B-208ENST00000573395 NUTM2FA1L443 756 aa23.82■■□□□ 1.4
RAB40B-208ENST00000573395 KDM2AQ9Y2K7 1162 aa23.82■■□□□ 1.4
RAB40B-208ENST00000573395 LAMC1P11047 1609 aa23.81■■□□□ 1.4
RAB40B-208ENST00000573395 PNPLA6Q8IY17 1366 aa23.81■■□□□ 1.4
RAB40B-208ENST00000573395 PLEKHH1Q9ULM0 1364 aa23.81■■□□□ 1.4
RAB40B-208ENST00000573395 DCAF11Q8TEB1 546 aa23.81■■□□□ 1.4
RAB40B-208ENST00000573395 KNDC1Q76NI1 1749 aa23.81■■□□□ 1.4
RAB40B-208ENST00000573395 SIRT1Q96EB6 747 aa23.8■■□□□ 1.4
RAB40B-208ENST00000573395 SOS2Q07890 1332 aaPredicted RBP23.8■■□□□ 1.4
RAB40B-208ENST00000573395 NPHP3Q7Z494 1330 aa23.8■■□□□ 1.4
RAB40B-208ENST00000573395 POGKQ9P215 609 aa23.77■■□□□ 1.4
RAB40B-208ENST00000573395 FOXO3O43524 673 aa23.76■■□□□ 1.39
RAB40B-208ENST00000573395 SAFB2Q14151 953 aaKnown RBP eCLIP23.76■■□□□ 1.39
RAB40B-208ENST00000573395 STAC3Q96MF2 364 aa23.76■■□□□ 1.39
RAB40B-208ENST00000573395 C8orf37Q96NL8 207 aa23.76■■□□□ 1.39
RAB40B-208ENST00000573395 PRAM1Q96QH2 718 aa23.75■■□□□ 1.39
RAB40B-208ENST00000573395 AFF2P51816 1311 aa23.75■■□□□ 1.39
RAB40B-208ENST00000573395 ADAMTS2O95450 1211 aa23.74■■□□□ 1.39
RAB40B-208ENST00000573395 XPCQ01831 940 aaPredicted RBP23.73■■□□□ 1.39
RAB40B-208ENST00000573395 NGLY1Q96IV0 654 aa23.72■■□□□ 1.39
RAB40B-208ENST00000573395 RXRBP28702 533 aa23.71■■□□□ 1.39
RAB40B-208ENST00000573395 TRAK1Q9UPV9 953 aa23.71■■□□□ 1.39
RAB40B-208ENST00000573395 FMN2Q9NZ56 1722 aa23.69■■□□□ 1.38
RAB40B-208ENST00000573395 DLC1Q96QB1 1528 aa23.68■■□□□ 1.38
RAB40B-208ENST00000573395 PXDNQ92626 1479 aa23.67■■□□□ 1.38
RAB40B-208ENST00000573395 PHF8Q9UPP1 1060 aa23.66■■□□□ 1.38
RAB40B-208ENST00000573395 QTRT2Q9H974 415 aaKnown RBP23.65■■□□□ 1.38
RAB40B-208ENST00000573395 ADGRB1O14514 1584 aa23.65■■□□□ 1.38
RAB40B-208ENST00000573395 KIF1AQ12756 1690 aa23.64■■□□□ 1.38
RAB40B-208ENST00000573395 PSME1Q06323 249 aa23.63■■□□□ 1.37
RAB40B-208ENST00000573395 KRT28Q7Z3Y7 464 aa23.63■■□□□ 1.37
RAB40B-208ENST00000573395 HIRIP3Q9BW71 556 aaPredicted RBP23.63■■□□□ 1.37
RAB40B-208ENST00000573395 MINK1Q8N4C8 1332 aaPredicted RBP23.62■■□□□ 1.37
RAB40B-208ENST00000573395 USP21Q9UK80 565 aa23.61■■□□□ 1.37
RAB40B-208ENST00000573395 COL22A1Q8NFW1 1626 aaPredicted RBP23.61■■□□□ 1.37
RAB40B-208ENST00000573395 RBM6P78332 1123 aaKnown RBP23.6■■□□□ 1.37
RAB40B-208ENST00000573395 EIF3AQ14152 1382 aaKnown RBP23.6■■□□□ 1.37
RAB40B-208ENST00000573395 HAP1P54257 671 aaPredicted RBP23.59■■□□□ 1.37
RAB40B-208ENST00000573395 ANKARQ7Z5J8 1434 aa23.59■■□□□ 1.37
RAB40B-208ENST00000573395 SPATA31A3Q5VYP0 1347 aa23.59■■□□□ 1.37
RAB40B-208ENST00000573395 LMOD2Q6P5Q4 547 aa23.58■■□□□ 1.37
RAB40B-208ENST00000573395 CDK12Q9NYV4 1490 aaPredicted RBP23.57■■□□□ 1.36
RAB40B-208ENST00000573395 PMFBP1Q8TBY8 1022 aa23.57■■□□□ 1.36
RAB40B-208ENST00000573395 ADGRB2O60241 1585 aa23.57■■□□□ 1.36
RAB40B-208ENST00000573395 TRPC5Q9UL62 973 aaPredicted RBP23.56■■□□□ 1.36
RAB40B-208ENST00000573395 WASLO00401 505 aaPredicted RBP23.55■■□□□ 1.36
RAB40B-208ENST00000573395 FNBP4Q8N3X1 1017 aaPredicted RBP23.55■■□□□ 1.36
RAB40B-208ENST00000573395 PLEKHG5O94827 1062 aa23.54■■□□□ 1.36
RAB40B-208ENST00000573395 RGPD8O14715 1765 aaPredicted RBP23.54■■□□□ 1.36
RAB40B-208ENST00000573395 TNS3Q68CZ2 1445 aa23.53■■□□□ 1.36
RAB40B-208ENST00000573395 SBNO1A3KN83 1393 aa23.51■■□□□ 1.35
RAB40B-208ENST00000573395 GPRASP1Q5JY77 1395 aa23.51■■□□□ 1.35
RAB40B-208ENST00000573395 ARHGEF10O15013 1369 aa23.5■■□□□ 1.35
RAB40B-208ENST00000573395 TULP4Q9NRJ4 1543 aa23.49■■□□□ 1.35
RAB40B-208ENST00000573395 NGDNQ8NEJ9 315 aaKnown RBP23.49■■□□□ 1.35
RAB40B-208ENST00000573395 RGS12O14924 1447 aa23.49■■□□□ 1.35
RAB40B-208ENST00000573395 USP32Q8NFA0 1604 aa23.48■■□□□ 1.35
RAB40B-208ENST00000573395 UPF1Q92900 1129 aaKnown RBP eCLIP23.48■■□□□ 1.35
RAB40B-208ENST00000573395 PRR36Q9H6K5 1346 aa23.48■■□□□ 1.35
RAB40B-208ENST00000573395 CABLES1Q8TDN4 633 aa23.47■■□□□ 1.35
RAB40B-208ENST00000573395 ARHGEF28Q8N1W1 1705 aaKnown RBP23.47■■□□□ 1.35
RAB40B-208ENST00000573395 NEUROD1Q13562 356 aa23.46■■□□□ 1.35
RAB40B-208ENST00000573395 KIAA1210Q9ULL0 1709 aa23.46■■□□□ 1.35
RAB40B-208ENST00000573395 ATRNO75882 1429 aa23.45■■□□□ 1.34
RAB40B-208ENST00000573395 NBPF1Q3BBV0 1214 aa23.45■■□□□ 1.34
RAB40B-208ENST00000573395 MARF1Q9Y4F3 1742 aaKnown RBP23.45■■□□□ 1.34
RAB40B-208ENST00000573395 L3MBTL2Q969R5 705 aa23.44■■□□□ 1.34
RAB40B-208ENST00000573395 NUDT16Q96DE0 195 aaKnown RBP23.44■■□□□ 1.34
RAB40B-208ENST00000573395 BCL9LQ86UU0 1499 aa23.43■■□□□ 1.34
RAB40B-208ENST00000573395 PAK3O75914 559 aaPredicted RBP23.43■■□□□ 1.34
RAB40B-208ENST00000573395 SIN3AQ96ST3 1273 aa23.43■■□□□ 1.34
RAB40B-208ENST00000573395 CDK19Q9BWU1 502 aa23.43■■□□□ 1.34
RAB40B-208ENST00000573395 UNC5CLQ8IV45 518 aa23.42■■□□□ 1.34
RAB40B-208ENST00000573395 GJD4Q96KN9 370 aaPredicted RBP23.4■■□□□ 1.34
RAB40B-208ENST00000573395 CENPJQ9HC77 1338 aaPredicted RBP23.38■■□□□ 1.33
RAB40B-208ENST00000573395 ATP7BP35670 1465 aa23.38■■□□□ 1.33
RAB40B-208ENST00000573395 CCDC9Q9Y3X0 531 aaKnown RBP23.38■■□□□ 1.33
RAB40B-208ENST00000573395 ATAD2Q6PL18 1390 aa23.38■■□□□ 1.33
RAB40B-208ENST00000573395 SLIT2O94813 1529 aa23.38■■□□□ 1.33
RAB40B-208ENST00000573395 ITSN1Q15811 1721 aa23.37■■□□□ 1.33
RAB40B-208ENST00000573395 SRPK2P78362 688 aaKnown RBP23.37■■□□□ 1.33
RAB40B-208ENST00000573395 CCDC61Q9Y6R9 512 aa23.37■■□□□ 1.33
RAB40B-208ENST00000573395 TRPM3Q9HCF6 1732 aaPredicted RBP23.35■■□□□ 1.33
RAB40B-208ENST00000573395 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.33■■□□□ 1.33
RAB40B-208ENST00000573395 ABCA3Q99758 1704 aa23.32■■□□□ 1.32
RAB40B-208ENST00000573395 ACEP12821 1306 aa23.32■■□□□ 1.32
RAB40B-208ENST00000573395 RALGAPBQ86X10 1494 aa23.31■■□□□ 1.32
RAB40B-208ENST00000573395 ROCK2O75116 1388 aaKnown RBP23.31■■□□□ 1.32
RAB40B-208ENST00000573395 FAM83GA6ND36 823 aa23.31■■□□□ 1.32
RAB40B-208ENST00000573395 VPS72Q15906 364 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms