RNA–Protein interactions for RNA: ENST00000572351.1

NPLOC4-208, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 5

Gene NPLOC4, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-208ENST00000572351 HIRIP3Q9BW71 556 aaPredicted RBP13.26□□□□□ -0.29
NPLOC4-208ENST00000572351 MSH6P52701 1360 aa13.25□□□□□ -0.29
NPLOC4-208ENST00000572351 HSPA5P11021 654 aaKnown RBP13.25□□□□□ -0.29
NPLOC4-208ENST00000572351 LTBP4Q8N2S1 1624 aa13.24□□□□□ -0.29
NPLOC4-208ENST00000572351 NCOA3Q9Y6Q9 1424 aa13.24□□□□□ -0.29
NPLOC4-208ENST00000572351 ATF3P18847 181 aa13.24□□□□□ -0.29
NPLOC4-208ENST00000572351 C19orf44Q9H6X5 657 aa13.24□□□□□ -0.29
NPLOC4-208ENST00000572351 ADGRL3Q9HAR2 1447 aa13.23□□□□□ -0.29
NPLOC4-208ENST00000572351 CHD2O14647 1828 aaKnown RBP13.23□□□□□ -0.29
NPLOC4-208ENST00000572351 KNDC1Q76NI1 1749 aa13.22□□□□□ -0.29
NPLOC4-208ENST00000572351 SCAF1Q9H7N4 1312 aaKnown RBP13.22□□□□□ -0.29
NPLOC4-208ENST00000572351 SLC24A1O60721 1099 aa13.22□□□□□ -0.29
NPLOC4-208ENST00000572351 CERKQ8TCT0 537 aa13.22□□□□□ -0.29
NPLOC4-208ENST00000572351 SRPK2P78362 688 aaKnown RBP13.21□□□□□ -0.29
NPLOC4-208ENST00000572351 TMF1P82094 1093 aa13.21□□□□□ -0.29
NPLOC4-208ENST00000572351 CADPS2Q86UW7 1296 aa13.21□□□□□ -0.29
NPLOC4-208ENST00000572351 EVC2Q86UK5 1308 aa13.2□□□□□ -0.3
NPLOC4-208ENST00000572351 WASLO00401 505 aaPredicted RBP13.2□□□□□ -0.3
NPLOC4-208ENST00000572351 MAPK8IP2Q13387 824 aaPredicted RBP13.2□□□□□ -0.3
NPLOC4-208ENST00000572351 STRCP1A6NGW2 1772 aa13.2□□□□□ -0.3
NPLOC4-208ENST00000572351 NUTM2FA1L443 756 aa13.19□□□□□ -0.3
NPLOC4-208ENST00000572351 TESK2Q96S53 571 aa13.19□□□□□ -0.3
NPLOC4-208ENST00000572351 CDK19Q9BWU1 502 aa13.19□□□□□ -0.3
NPLOC4-208ENST00000572351 ARHGEF28Q8N1W1 1705 aaKnown RBP13.19□□□□□ -0.3
NPLOC4-208ENST00000572351 SBNO2Q9Y2G9 1366 aa13.19□□□□□ -0.3
NPLOC4-208ENST00000572351 CDCA8Q53HL2 280 aa13.18□□□□□ -0.3
NPLOC4-208ENST00000572351 POLR3GLQ9BT43 218 aa13.18□□□□□ -0.3
NPLOC4-208ENST00000572351 DCCP43146 1447 aa13.17□□□□□ -0.3
NPLOC4-208ENST00000572351 UBAP1LF5GYI3 381 aa13.17□□□□□ -0.3
NPLOC4-208ENST00000572351 TOM1O60784 492 aa13.17□□□□□ -0.3
NPLOC4-208ENST00000572351 CABP2Q9NPB3 220 aa13.17□□□□□ -0.3
NPLOC4-208ENST00000572351 IQSEC2Q5JU85 1478 aa13.16□□□□□ -0.3
NPLOC4-208ENST00000572351 CDC42BPGQ6DT37 1551 aa13.15□□□□□ -0.3
NPLOC4-208ENST00000572351 ESCO1Q5FWF5 840 aa13.14□□□□□ -0.31
NPLOC4-208ENST00000572351 NUDT16Q96DE0 195 aaKnown RBP13.14□□□□□ -0.31
NPLOC4-208ENST00000572351 SLAIN2Q9P270 581 aa13.14□□□□□ -0.31
NPLOC4-208ENST00000572351 DISP3Q9P2K9 1392 aa13.14□□□□□ -0.31
NPLOC4-208ENST00000572351 ADGRB2O60241 1585 aa13.14□□□□□ -0.31
NPLOC4-208ENST00000572351 QRICH2Q9H0J4 1663 aa13.14□□□□□ -0.31
NPLOC4-208ENST00000572351 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.13□□□□□ -0.31
NPLOC4-208ENST00000572351 ATAD2Q6PL18 1390 aa13.13□□□□□ -0.31
NPLOC4-208ENST00000572351 PIP4K2BP78356 416 aa13.13□□□□□ -0.31
NPLOC4-208ENST00000572351 TMC1Q8TDI8 760 aa13.13□□□□□ -0.31
NPLOC4-208ENST00000572351 NALCNQ8IZF0 1738 aa13.13□□□□□ -0.31
NPLOC4-208ENST00000572351 TULP4Q9NRJ4 1543 aa13.13□□□□□ -0.31
NPLOC4-208ENST00000572351 CCDC61Q9Y6R9 512 aa13.12□□□□□ -0.31
NPLOC4-208ENST00000572351 MST1RQ04912 1400 aa13.12□□□□□ -0.31
NPLOC4-208ENST00000572351 ANKARQ7Z5J8 1434 aa13.12□□□□□ -0.31
NPLOC4-208ENST00000572351 C1orf167Q5SNV9 1468 aa13.11□□□□□ -0.31
NPLOC4-208ENST00000572351 NCBP3Q53F19 620 aaKnown RBP13.11□□□□□ -0.31
NPLOC4-208ENST00000572351 PUS7Q96PZ0 661 aaKnown RBP13.11□□□□□ -0.31
NPLOC4-208ENST00000572351 PRR36Q9H6K5 1346 aa13.11□□□□□ -0.31
NPLOC4-208ENST00000572351 ORAI2Q96SN7 254 aa13.1□□□□□ -0.31
NPLOC4-208ENST00000572351 PHF8Q9UPP1 1060 aa13.1□□□□□ -0.31
NPLOC4-208ENST00000572351 PPIP5K1Q6PFW1 1433 aa13.09□□□□□ -0.31
NPLOC4-208ENST00000572351 NGDNQ8NEJ9 315 aaKnown RBP13.09□□□□□ -0.31
NPLOC4-208ENST00000572351 PMFBP1Q8TBY8 1022 aa13.09□□□□□ -0.31
NPLOC4-208ENST00000572351 CABP1Q9NZU7 370 aa13.09□□□□□ -0.31
NPLOC4-208ENST00000572351 ATP7BP35670 1465 aa13.09□□□□□ -0.31
NPLOC4-208ENST00000572351 KIF7Q2M1P5 1343 aa13.09□□□□□ -0.31
NPLOC4-208ENST00000572351 C11orf95C9JLR9 678 aaPredicted RBP13.08□□□□□ -0.32
NPLOC4-208ENST00000572351 BRINP3Q76B58 766 aa13.08□□□□□ -0.32
NPLOC4-208ENST00000572351 CNKSR2Q8WXI2 1034 aa13.07□□□□□ -0.32
NPLOC4-208ENST00000572351 ZNF316A6NFI3 1004 aaPredicted RBP13.06□□□□□ -0.32
NPLOC4-208ENST00000572351 HDGFL2Q7Z4V5 671 aaPredicted RBP13.06□□□□□ -0.32
NPLOC4-208ENST00000572351 SLC12A5Q9H2X9 1139 aa13.06□□□□□ -0.32
NPLOC4-208ENST00000572351 TERF2IPQ9NYB0 399 aa13.06□□□□□ -0.32
NPLOC4-208ENST00000572351 WASHC2AQ641Q2 1341 aa13.06□□□□□ -0.32
NPLOC4-208ENST00000572351 XIRP1Q702N8 1843 aaKnown RBP13.06□□□□□ -0.32
NPLOC4-208ENST00000572351 CCDC7Q96M83 1385 aa13.06□□□□□ -0.32
NPLOC4-208ENST00000572351 NINLQ9Y2I6 1382 aa13.06□□□□□ -0.32
NPLOC4-208ENST00000572351 FMN2Q9NZ56 1722 aa13.05□□□□□ -0.32
NPLOC4-208ENST00000572351 PLEKHG3A1L390 1219 aa13.05□□□□□ -0.32
NPLOC4-208ENST00000572351 FOXO3O43524 673 aa13.05□□□□□ -0.32
NPLOC4-208ENST00000572351 PSME1Q06323 249 aa13.05□□□□□ -0.32
NPLOC4-208ENST00000572351 ACEP12821 1306 aa13.05□□□□□ -0.32
NPLOC4-208ENST00000572351 NPHP3Q7Z494 1330 aa13.05□□□□□ -0.32
NPLOC4-208ENST00000572351 XPCQ01831 940 aaPredicted RBP13.03□□□□□ -0.32
NPLOC4-208ENST00000572351 POTEDQ86YR6 584 aa13.03□□□□□ -0.32
NPLOC4-208ENST00000572351 DDX17Q92841 729 aaKnown RBP13.02□□□□□ -0.33
NPLOC4-208ENST00000572351 ZNF692Q9BU19 519 aaPredicted RBP13.02□□□□□ -0.33
NPLOC4-208ENST00000572351 USP32Q8NFA0 1604 aa13.02□□□□□ -0.33
NPLOC4-208ENST00000572351 PAK3O75914 559 aaPredicted RBP13.01□□□□□ -0.33
NPLOC4-208ENST00000572351 KRT28Q7Z3Y7 464 aa13.01□□□□□ -0.33
NPLOC4-208ENST00000572351 POLR3AO14802 1390 aaPredicted RBP13.01□□□□□ -0.33
NPLOC4-208ENST00000572351 A0A1W2PP64 1363 aa13□□□□□ -0.33
NPLOC4-208ENST00000572351 KTN1Q86UP2 1357 aaKnown RBP13□□□□□ -0.33
NPLOC4-208ENST00000572351 ANKRD36BQ8N2N9 1353 aa13□□□□□ -0.33
NPLOC4-208ENST00000572351 NPM3O75607 178 aaKnown RBP13□□□□□ -0.33
NPLOC4-208ENST00000572351 LMOD2Q6P5Q4 547 aa13□□□□□ -0.33
NPLOC4-208ENST00000572351 FBXO41Q8TF61 875 aa13□□□□□ -0.33
NPLOC4-208ENST00000572351 PANK3Q9H999 370 aa13□□□□□ -0.33
NPLOC4-208ENST00000572351 KIF1AQ12756 1690 aa12.98□□□□□ -0.33
NPLOC4-208ENST00000572351 ROBO1Q9Y6N7 1651 aa12.98□□□□□ -0.33
NPLOC4-208ENST00000572351 USP6P35125 1406 aa12.97□□□□□ -0.33
NPLOC4-208ENST00000572351 CPSF1Q10570 1443 aaKnown RBP12.97□□□□□ -0.33
NPLOC4-208ENST00000572351 SOS2Q07890 1332 aaPredicted RBP12.97□□□□□ -0.33
NPLOC4-208ENST00000572351 DDX10Q13206 875 aaKnown RBP12.97□□□□□ -0.33
NPLOC4-208ENST00000572351 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.97□□□□□ -0.33
NPLOC4-208ENST00000572351 ITSN1Q15811 1721 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms