RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 FNBP4Q8N3X1 1017 aaPredicted RBP30.1■■■□□ 2.41
CCDC40-206ENST00000572083 ATRNO75882 1429 aa30.1■■■□□ 2.41
CCDC40-206ENST00000572083 MYOM2P54296 1465 aa30.09■■■□□ 2.41
CCDC40-206ENST00000572083 CDC42BPGQ6DT37 1551 aa30.08■■■□□ 2.41
CCDC40-206ENST00000572083 RRBP1Q9P2E9 1410 aaKnown RBP30.07■■■□□ 2.4
CCDC40-206ENST00000572083 RPGRIP1LQ68CZ1 1315 aa30.06■■■□□ 2.4
CCDC40-206ENST00000572083 PXDNQ92626 1479 aa30.06■■■□□ 2.4
CCDC40-206ENST00000572083 ESCO1Q5FWF5 840 aa30.05■■■□□ 2.4
CCDC40-206ENST00000572083 NPHP3Q7Z494 1330 aa30.04■■■□□ 2.4
CCDC40-206ENST00000572083 MARF1Q9Y4F3 1742 aaKnown RBP30.03■■■□□ 2.4
CCDC40-206ENST00000572083 XPCQ01831 940 aaPredicted RBP30.03■■■□□ 2.4
CCDC40-206ENST00000572083 BCL9LQ86UU0 1499 aa30.01■■■□□ 2.4
CCDC40-206ENST00000572083 SLC4A1APQ9BWU0 796 aaKnown RBP30.01■■■□□ 2.39
CCDC40-206ENST00000572083 FOXO3O43524 673 aa29.98■■■□□ 2.39
CCDC40-206ENST00000572083 NUTM2FA1L443 756 aa29.97■■■□□ 2.39
CCDC40-206ENST00000572083 ZRANB1Q9UGI0 708 aa29.95■■■□□ 2.39
CCDC40-206ENST00000572083 FOXD1Q16676 465 aa29.94■■■□□ 2.38
CCDC40-206ENST00000572083 ADGRF5Q8IZF2 1346 aa29.94■■■□□ 2.38
CCDC40-206ENST00000572083 STK26Q9P289 416 aa29.93■■■□□ 2.38
CCDC40-206ENST00000572083 TECPR2O15040 1411 aa29.92■■■□□ 2.38
CCDC40-206ENST00000572083 WAPLQ7Z5K2 1190 aa29.92■■■□□ 2.38
CCDC40-206ENST00000572083 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.92■■■□□ 2.38
CCDC40-206ENST00000572083 LRPPRCP42704 1394 aaKnown RBP29.91■■■□□ 2.38
CCDC40-206ENST00000572083 GJD4Q96KN9 370 aaPredicted RBP29.91■■■□□ 2.38
CCDC40-206ENST00000572083 PLEKHH1Q9ULM0 1364 aa29.9■■■□□ 2.38
CCDC40-206ENST00000572083 KNDC1Q76NI1 1749 aa29.89■■■□□ 2.38
CCDC40-206ENST00000572083 FMN2Q9NZ56 1722 aa29.88■■■□□ 2.37
CCDC40-206ENST00000572083 IFT172Q9UG01 1749 aa29.88■■■□□ 2.37
CCDC40-206ENST00000572083 GLI3P10071 1580 aa29.88■■■□□ 2.37
CCDC40-206ENST00000572083 CCDC144AA2RUR9 1427 aa29.87■■■□□ 2.37
CCDC40-206ENST00000572083 RALGAPBQ86X10 1494 aa29.87■■■□□ 2.37
CCDC40-206ENST00000572083 RGL3Q3MIN7 710 aa29.86■■■□□ 2.37
CCDC40-206ENST00000572083 CCDC125Q86Z20 511 aa29.86■■■□□ 2.37
CCDC40-206ENST00000572083 KIF1AQ12756 1690 aa29.85■■■□□ 2.37
CCDC40-206ENST00000572083 SLIT2O94813 1529 aa29.85■■■□□ 2.37
CCDC40-206ENST00000572083 TMEM132EQ6IEE7 984 aa29.84■■■□□ 2.37
CCDC40-206ENST00000572083 SPATA31E1Q6ZUB1 1445 aa29.84■■■□□ 2.37
CCDC40-206ENST00000572083 USP32Q8NFA0 1604 aa29.84■■■□□ 2.37
CCDC40-206ENST00000572083 SPATA31A3Q5VYP0 1347 aa29.83■■■□□ 2.37
CCDC40-206ENST00000572083 UNC5CLQ8IV45 518 aa29.83■■■□□ 2.37
CCDC40-206ENST00000572083 ABCC11Q96J66 1382 aa29.82■■■□□ 2.36
CCDC40-206ENST00000572083 ANKRD30BQ9BXX2 1392 aa29.81■■■□□ 2.36
CCDC40-206ENST00000572083 PIK3C2GO75747 1445 aa29.8■■■□□ 2.36
CCDC40-206ENST00000572083 BRWD3Q6RI45 1802 aa29.79■■■□□ 2.36
CCDC40-206ENST00000572083 BLMP54132 1417 aaPredicted RBP29.79■■■□□ 2.36
CCDC40-206ENST00000572083 YTHDC2Q9H6S0 1430 aaKnown RBP29.78■■■□□ 2.36
CCDC40-206ENST00000572083 KRT28Q7Z3Y7 464 aa29.76■■■□□ 2.35
CCDC40-206ENST00000572083 TNS3Q68CZ2 1445 aa29.75■■■□□ 2.35
CCDC40-206ENST00000572083 RGPD8O14715 1765 aaPredicted RBP29.75■■■□□ 2.35
CCDC40-206ENST00000572083 PLEKHG5O94827 1062 aa29.74■■■□□ 2.35
CCDC40-206ENST00000572083 PLCH1Q4KWH8 1693 aa29.74■■■□□ 2.35
CCDC40-206ENST00000572083 HAP1P54257 671 aaPredicted RBP29.73■■■□□ 2.35
CCDC40-206ENST00000572083 DEFB132Q7Z7B7 95 aa29.72■■■□□ 2.35
CCDC40-206ENST00000572083 CABLES1Q8TDN4 633 aa29.72■■■□□ 2.35
CCDC40-206ENST00000572083 ABCA3Q99758 1704 aa29.71■■■□□ 2.35
CCDC40-206ENST00000572083 SEPT12Q8IYM1 358 aa29.7■■■□□ 2.35
CCDC40-206ENST00000572083 PHF8Q9UPP1 1060 aa29.69■■■□□ 2.34
CCDC40-206ENST00000572083 MPHOSPH9Q99550 1183 aa29.68■■■□□ 2.34
CCDC40-206ENST00000572083 NWD2Q9ULI1 1742 aa29.68■■■□□ 2.34
CCDC40-206ENST00000572083 VPS72Q15906 364 aa29.67■■■□□ 2.34
CCDC40-206ENST00000572083 CCDC9Q9Y3X0 531 aaKnown RBP29.66■■■□□ 2.34
CCDC40-206ENST00000572083 NRXN1Q9ULB1 1477 aa29.66■■■□□ 2.34
CCDC40-206ENST00000572083 PSME1Q06323 249 aa29.65■■■□□ 2.34
CCDC40-206ENST00000572083 SF3B2Q13435 895 aaKnown RBP29.65■■■□□ 2.34
CCDC40-206ENST00000572083 LMOD2Q6P5Q4 547 aa29.65■■■□□ 2.34
CCDC40-206ENST00000572083 SAFB2Q14151 953 aaKnown RBP eCLIP29.64■■■□□ 2.34
CCDC40-206ENST00000572083 SBNO1A3KN83 1393 aa29.63■■■□□ 2.33
CCDC40-206ENST00000572083 SIRT1Q96EB6 747 aa29.62■■■□□ 2.33
CCDC40-206ENST00000572083 C14orf93Q9H972 538 aaKnown RBP29.61■■■□□ 2.33
CCDC40-206ENST00000572083 ARHGEF10O15013 1369 aa29.61■■■□□ 2.33
CCDC40-206ENST00000572083 CFAP70Q5T0N1 1121 aa29.6■■■□□ 2.33
CCDC40-206ENST00000572083 KRT27Q7Z3Y8 459 aa29.6■■■□□ 2.33
CCDC40-206ENST00000572083 DHX57Q6P158 1386 aaKnown RBP29.6■■■□□ 2.33
CCDC40-206ENST00000572083 PRAM1Q96QH2 718 aa29.59■■■□□ 2.33
CCDC40-206ENST00000572083 NRAPQ86VF7 1730 aa29.57■■■□□ 2.32
CCDC40-206ENST00000572083 A0A0G2JS52 829 aa29.57■■■□□ 2.32
CCDC40-206ENST00000572083 ONECUT3O60422 494 aaPredicted RBP29.57■■■□□ 2.32
CCDC40-206ENST00000572083 MYT1Q01538 1121 aa29.57■■■□□ 2.32
CCDC40-206ENST00000572083 PMFBP1Q8TBY8 1022 aa29.57■■■□□ 2.32
CCDC40-206ENST00000572083 LRP5O75197 1615 aa29.56■■■□□ 2.32
CCDC40-206ENST00000572083 FAM83GA6ND36 823 aa29.55■■■□□ 2.32
CCDC40-206ENST00000572083 TRPM3Q9HCF6 1732 aaPredicted RBP29.54■■■□□ 2.32
CCDC40-206ENST00000572083 ANKARQ7Z5J8 1434 aa29.53■■■□□ 2.32
CCDC40-206ENST00000572083 ADGRB2O60241 1585 aa29.52■■■□□ 2.32
CCDC40-206ENST00000572083 DLC1Q96QB1 1528 aa29.52■■■□□ 2.32
CCDC40-206ENST00000572083 FAM98CQ17RN3 349 aaKnown RBP29.51■■■□□ 2.31
CCDC40-206ENST00000572083 POGKQ9P215 609 aa29.51■■■□□ 2.31
CCDC40-206ENST00000572083 PSDA5PKW4 1024 aaPredicted RBP29.49■■■□□ 2.31
CCDC40-206ENST00000572083 BTG4Q9NY30 223 aa29.49■■■□□ 2.31
CCDC40-206ENST00000572083 ALS2Q96Q42 1657 aa29.49■■■□□ 2.31
CCDC40-206ENST00000572083 BAG6P46379 1132 aa29.48■■■□□ 2.31
CCDC40-206ENST00000572083 COL14A1Q05707 1796 aaKnown RBP29.48■■■□□ 2.31
CCDC40-206ENST00000572083 HIRIP3Q9BW71 556 aaPredicted RBP29.47■■■□□ 2.31
CCDC40-206ENST00000572083 ADGRB1O14514 1584 aa29.45■■■□□ 2.31
CCDC40-206ENST00000572083 RGPD1P0DJD0 1748 aa29.43■■■□□ 2.3
CCDC40-206ENST00000572083 GPRASP1Q5JY77 1395 aa29.42■■■□□ 2.3
CCDC40-206ENST00000572083 FAM182BQ5T319 152 aa29.42■■■□□ 2.3
CCDC40-206ENST00000572083 TRAK1Q9UPV9 953 aa29.42■■■□□ 2.3
CCDC40-206ENST00000572083 CRYBG1Q9Y4K1 1723 aa29.42■■■□□ 2.3
CCDC40-206ENST00000572083 MINK1Q8N4C8 1332 aaPredicted RBP29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms