RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 MARF1Q9Y4F3 1742 aaKnown RBP29.03■■■□□ 2.24
NUP88-203ENST00000572019 RPGRIP1LQ68CZ1 1315 aa29.02■■■□□ 2.24
NUP88-203ENST00000572019 PXDNQ92626 1479 aa29.02■■■□□ 2.24
NUP88-203ENST00000572019 MYOM2P54296 1465 aa29.01■■■□□ 2.23
NUP88-203ENST00000572019 IFT172Q9UG01 1749 aa29■■■□□ 2.23
NUP88-203ENST00000572019 ADGRF5Q8IZF2 1346 aa29■■■□□ 2.23
NUP88-203ENST00000572019 XPCQ01831 940 aaPredicted RBP29■■■□□ 2.23
NUP88-203ENST00000572019 FNBP4Q8N3X1 1017 aaPredicted RBP28.99■■■□□ 2.23
NUP88-203ENST00000572019 ATRNO75882 1429 aa28.99■■■□□ 2.23
NUP88-203ENST00000572019 ESCO1Q5FWF5 840 aa28.96■■■□□ 2.23
NUP88-203ENST00000572019 NUTM2FA1L443 756 aa28.95■■■□□ 2.22
NUP88-203ENST00000572019 WAPLQ7Z5K2 1190 aa28.95■■■□□ 2.22
NUP88-203ENST00000572019 TRPC5Q9UL62 973 aaPredicted RBP28.95■■■□□ 2.22
NUP88-203ENST00000572019 PLEKHH1Q9ULM0 1364 aa28.95■■■□□ 2.22
NUP88-203ENST00000572019 BCL9LQ86UU0 1499 aa28.95■■■□□ 2.22
NUP88-203ENST00000572019 ATAD2Q6PL18 1390 aa28.93■■■□□ 2.22
NUP88-203ENST00000572019 FOXO3O43524 673 aa28.93■■■□□ 2.22
NUP88-203ENST00000572019 STK26Q9P289 416 aa28.93■■■□□ 2.22
NUP88-203ENST00000572019 SPATA31E1Q6ZUB1 1445 aa28.93■■■□□ 2.22
NUP88-203ENST00000572019 EP400Q96L91 3159 aa28.92■■■□□ 2.22
NUP88-203ENST00000572019 NPHP3Q7Z494 1330 aa28.92■■■□□ 2.22
NUP88-203ENST00000572019 KNDC1Q76NI1 1749 aa28.91■■■□□ 2.22
NUP88-203ENST00000572019 TECPR2O15040 1411 aa28.91■■■□□ 2.22
NUP88-203ENST00000572019 RGL3Q3MIN7 710 aa28.9■■■□□ 2.22
NUP88-203ENST00000572019 FMN2Q9NZ56 1722 aa28.9■■■□□ 2.22
NUP88-203ENST00000572019 RGPD8O14715 1765 aaPredicted RBP28.9■■■□□ 2.22
NUP88-203ENST00000572019 SRCAPQ6ZRS2 3230 aa28.89■■■□□ 2.22
NUP88-203ENST00000572019 TMEM132EQ6IEE7 984 aa28.89■■■□□ 2.22
NUP88-203ENST00000572019 LRPPRCP42704 1394 aaKnown RBP28.87■■■□□ 2.21
NUP88-203ENST00000572019 CCDC144AA2RUR9 1427 aa28.86■■■□□ 2.21
NUP88-203ENST00000572019 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.85■■■□□ 2.21
NUP88-203ENST00000572019 PIK3C2GO75747 1445 aa28.83■■■□□ 2.21
NUP88-203ENST00000572019 GLI3P10071 1580 aa28.83■■■□□ 2.21
NUP88-203ENST00000572019 ABCC11Q96J66 1382 aa28.82■■■□□ 2.2
NUP88-203ENST00000572019 BRWD3Q6RI45 1802 aa28.82■■■□□ 2.2
NUP88-203ENST00000572019 KIF1AQ12756 1690 aa28.8■■■□□ 2.2
NUP88-203ENST00000572019 ANKRD30BQ9BXX2 1392 aa28.79■■■□□ 2.2
NUP88-203ENST00000572019 GJD4Q96KN9 370 aaPredicted RBP28.79■■■□□ 2.2
NUP88-203ENST00000572019 YTHDC2Q9H6S0 1430 aaKnown RBP28.78■■■□□ 2.2
NUP88-203ENST00000572019 MPHOSPH9Q99550 1183 aa28.78■■■□□ 2.2
NUP88-203ENST00000572019 USP32Q8NFA0 1604 aa28.78■■■□□ 2.2
NUP88-203ENST00000572019 SLIT2O94813 1529 aa28.78■■■□□ 2.2
NUP88-203ENST00000572019 SPATA31A3Q5VYP0 1347 aa28.77■■■□□ 2.2
NUP88-203ENST00000572019 RALGAPBQ86X10 1494 aa28.76■■■□□ 2.19
NUP88-203ENST00000572019 ABCA3Q99758 1704 aa28.74■■■□□ 2.19
NUP88-203ENST00000572019 PLCH1Q4KWH8 1693 aa28.71■■■□□ 2.19
NUP88-203ENST00000572019 KRT28Q7Z3Y7 464 aa28.71■■■□□ 2.19
NUP88-203ENST00000572019 UNC5CLQ8IV45 518 aa28.71■■■□□ 2.19
NUP88-203ENST00000572019 PLEKHG5O94827 1062 aa28.7■■■□□ 2.18
NUP88-203ENST00000572019 CABLES1Q8TDN4 633 aa28.7■■■□□ 2.18
NUP88-203ENST00000572019 NRXN1Q9ULB1 1477 aa28.68■■■□□ 2.18
NUP88-203ENST00000572019 CFAP70Q5T0N1 1121 aa28.67■■■□□ 2.18
NUP88-203ENST00000572019 C14orf93Q9H972 538 aaKnown RBP28.67■■■□□ 2.18
NUP88-203ENST00000572019 ZRANB1Q9UGI0 708 aa28.67■■■□□ 2.18
NUP88-203ENST00000572019 TNS3Q68CZ2 1445 aa28.67■■■□□ 2.18
NUP88-203ENST00000572019 SAFB2Q14151 953 aaKnown RBP eCLIP28.65■■■□□ 2.18
NUP88-203ENST00000572019 PHF8Q9UPP1 1060 aa28.65■■■□□ 2.18
NUP88-203ENST00000572019 NWD2Q9ULI1 1742 aa28.63■■■□□ 2.17
NUP88-203ENST00000572019 CCDC125Q86Z20 511 aa28.63■■■□□ 2.17
NUP88-203ENST00000572019 SIRT1Q96EB6 747 aa28.62■■■□□ 2.17
NUP88-203ENST00000572019 DEFB132Q7Z7B7 95 aa28.61■■■□□ 2.17
NUP88-203ENST00000572019 BLMP54132 1417 aaPredicted RBP28.6■■■□□ 2.17
NUP88-203ENST00000572019 PRAM1Q96QH2 718 aa28.6■■■□□ 2.17
NUP88-203ENST00000572019 SEPT12Q8IYM1 358 aa28.59■■■□□ 2.17
NUP88-203ENST00000572019 TRPM3Q9HCF6 1732 aaPredicted RBP28.59■■■□□ 2.17
NUP88-203ENST00000572019 NRAPQ86VF7 1730 aa28.58■■■□□ 2.17
NUP88-203ENST00000572019 SBNO1A3KN83 1393 aa28.57■■■□□ 2.16
NUP88-203ENST00000572019 DHX57Q6P158 1386 aaKnown RBP28.57■■■□□ 2.16
NUP88-203ENST00000572019 VPS72Q15906 364 aa28.56■■■□□ 2.16
NUP88-203ENST00000572019 PMFBP1Q8TBY8 1022 aa28.56■■■□□ 2.16
NUP88-203ENST00000572019 ADGRB1O14514 1584 aa28.55■■■□□ 2.16
NUP88-203ENST00000572019 HAP1P54257 671 aaPredicted RBP28.55■■■□□ 2.16
NUP88-203ENST00000572019 LMOD2Q6P5Q4 547 aa28.55■■■□□ 2.16
NUP88-203ENST00000572019 ADGRB2O60241 1585 aa28.54■■■□□ 2.16
NUP88-203ENST00000572019 DLC1Q96QB1 1528 aa28.54■■■□□ 2.16
NUP88-203ENST00000572019 FAM83GA6ND36 823 aa28.53■■■□□ 2.16
NUP88-203ENST00000572019 PSME1Q06323 249 aa28.53■■■□□ 2.16
NUP88-203ENST00000572019 ALS2Q96Q42 1657 aa28.53■■■□□ 2.16
NUP88-203ENST00000572019 ONECUT3O60422 494 aaPredicted RBP28.5■■■□□ 2.15
NUP88-203ENST00000572019 HIRIP3Q9BW71 556 aaPredicted RBP28.5■■■□□ 2.15
NUP88-203ENST00000572019 CCDC9Q9Y3X0 531 aaKnown RBP28.5■■■□□ 2.15
NUP88-203ENST00000572019 ARHGEF10O15013 1369 aa28.5■■■□□ 2.15
NUP88-203ENST00000572019 CRYBG1Q9Y4K1 1723 aa28.49■■■□□ 2.15
NUP88-203ENST00000572019 PRR36Q9H6K5 1346 aa28.49■■■□□ 2.15
NUP88-203ENST00000572019 ANKARQ7Z5J8 1434 aa28.49■■■□□ 2.15
NUP88-203ENST00000572019 POGKQ9P215 609 aa28.47■■■□□ 2.15
NUP88-203ENST00000572019 KRT27Q7Z3Y8 459 aa28.46■■■□□ 2.15
NUP88-203ENST00000572019 TRAK1Q9UPV9 953 aa28.45■■■□□ 2.14
NUP88-203ENST00000572019 MINK1Q8N4C8 1332 aaPredicted RBP28.44■■■□□ 2.14
NUP88-203ENST00000572019 COL14A1Q05707 1796 aaKnown RBP28.44■■■□□ 2.14
NUP88-203ENST00000572019 RAB3GAP2Q9H2M9 1393 aa28.42■■■□□ 2.14
NUP88-203ENST00000572019 FAM98CQ17RN3 349 aaKnown RBP28.41■■■□□ 2.14
NUP88-203ENST00000572019 BTG4Q9NY30 223 aa28.41■■■□□ 2.14
NUP88-203ENST00000572019 TULP4Q9NRJ4 1543 aa28.41■■■□□ 2.14
NUP88-203ENST00000572019 LRP5O75197 1615 aa28.4■■■□□ 2.14
NUP88-203ENST00000572019 SF3B2Q13435 895 aaKnown RBP28.39■■■□□ 2.14
NUP88-203ENST00000572019 FAM182BQ5T319 152 aa28.39■■■□□ 2.14
NUP88-203ENST00000572019 ACIN1Q9UKV3 1341 aaKnown RBP28.39■■■□□ 2.13
NUP88-203ENST00000572019 A0A0G2JS52 829 aa28.38■■■□□ 2.13
NUP88-203ENST00000572019 MYT1Q01538 1121 aa28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms