RNA–Protein interactions for RNA: ENST00000571190.1

CIITA-206, Transcript of class II major histocompatibility complex transactivator, humanhuman

Gene CIITA, Length 479 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-206ENST00000571190 CDK12Q9NYV4 1490 aaPredicted RBP26.2■■□□□ 1.78
CIITA-206ENST00000571190 ADAMTS2O95450 1211 aa26.2■■□□□ 1.78
CIITA-206ENST00000571190 TMEM132EQ6IEE7 984 aa26.2■■□□□ 1.78
CIITA-206ENST00000571190 QTRT2Q9H974 415 aaKnown RBP26.2■■□□□ 1.78
CIITA-206ENST00000571190 TECPR2O15040 1411 aa26.2■■□□□ 1.78
CIITA-206ENST00000571190 LRPPRCP42704 1394 aaKnown RBP26.2■■□□□ 1.78
CIITA-206ENST00000571190 ABCC11Q96J66 1382 aa26.18■■□□□ 1.78
CIITA-206ENST00000571190 ESCO1Q5FWF5 840 aa26.17■■□□□ 1.78
CIITA-206ENST00000571190 PLEKHH1Q9ULM0 1364 aa26.17■■□□□ 1.78
CIITA-206ENST00000571190 PIK3C2GO75747 1445 aa26.16■■□□□ 1.78
CIITA-206ENST00000571190 NGLY1Q96IV0 654 aa26.16■■□□□ 1.78
CIITA-206ENST00000571190 RBM6P78332 1123 aaKnown RBP26.14■■□□□ 1.78
CIITA-206ENST00000571190 CDC42BPGQ6DT37 1551 aa26.14■■□□□ 1.78
CIITA-206ENST00000571190 NPHP3Q7Z494 1330 aa26.13■■□□□ 1.77
CIITA-206ENST00000571190 NUTM2FA1L443 756 aa26.12■■□□□ 1.77
CIITA-206ENST00000571190 FOXO3O43524 673 aa26.12■■□□□ 1.77
CIITA-206ENST00000571190 RGS12O14924 1447 aa26.12■■□□□ 1.77
CIITA-206ENST00000571190 C14orf93Q9H972 538 aaKnown RBP26.11■■□□□ 1.77
CIITA-206ENST00000571190 PXDNQ92626 1479 aa26.11■■□□□ 1.77
CIITA-206ENST00000571190 XPCQ01831 940 aaPredicted RBP26.1■■□□□ 1.77
CIITA-206ENST00000571190 FNBP4Q8N3X1 1017 aaPredicted RBP26.1■■□□□ 1.77
CIITA-206ENST00000571190 YTHDC2Q9H6S0 1430 aaKnown RBP26.1■■□□□ 1.77
CIITA-206ENST00000571190 SIRT1Q96EB6 747 aa26.08■■□□□ 1.77
CIITA-206ENST00000571190 USP21Q9UK80 565 aa26.08■■□□□ 1.77
CIITA-206ENST00000571190 MYOM2P54296 1465 aa26.08■■□□□ 1.77
CIITA-206ENST00000571190 ACIN1Q9UKV3 1341 aaKnown RBP26.07■■□□□ 1.76
CIITA-206ENST00000571190 NRXN1Q9ULB1 1477 aa26.06■■□□□ 1.76
CIITA-206ENST00000571190 IFT172Q9UG01 1749 aa26.06■■□□□ 1.76
CIITA-206ENST00000571190 CFAP70Q5T0N1 1121 aa26.06■■□□□ 1.76
CIITA-206ENST00000571190 RAB3GAP2Q9H2M9 1393 aa26.04■■□□□ 1.76
CIITA-206ENST00000571190 COL22A1Q8NFW1 1626 aaPredicted RBP26.03■■□□□ 1.76
CIITA-206ENST00000571190 TRPC5Q9UL62 973 aaPredicted RBP26.02■■□□□ 1.76
CIITA-206ENST00000571190 ATRNO75882 1429 aa26■■□□□ 1.75
CIITA-206ENST00000571190 BCL9LQ86UU0 1499 aa25.99■■□□□ 1.75
CIITA-206ENST00000571190 SPATA31A3Q5VYP0 1347 aa25.99■■□□□ 1.75
CIITA-206ENST00000571190 DHX57Q6P158 1386 aaKnown RBP25.98■■□□□ 1.75
CIITA-206ENST00000571190 KNDC1Q76NI1 1749 aa25.98■■□□□ 1.75
CIITA-206ENST00000571190 KRT28Q7Z3Y7 464 aa25.96■■□□□ 1.75
CIITA-206ENST00000571190 PRAM1Q96QH2 718 aa25.96■■□□□ 1.75
CIITA-206ENST00000571190 SAFB2Q14151 953 aaKnown RBP eCLIP25.94■■□□□ 1.74
CIITA-206ENST00000571190 PHF8Q9UPP1 1060 aa25.94■■□□□ 1.74
CIITA-206ENST00000571190 FMN2Q9NZ56 1722 aa25.93■■□□□ 1.74
CIITA-206ENST00000571190 GJD4Q96KN9 370 aaPredicted RBP25.89■■□□□ 1.74
CIITA-206ENST00000571190 ATAD2Q6PL18 1390 aa25.89■■□□□ 1.74
CIITA-206ENST00000571190 ADGRB1O14514 1584 aa25.87■■□□□ 1.73
CIITA-206ENST00000571190 POGKQ9P215 609 aa25.87■■□□□ 1.73
CIITA-206ENST00000571190 SLIT2O94813 1529 aa25.87■■□□□ 1.73
CIITA-206ENST00000571190 DLC1Q96QB1 1528 aa25.87■■□□□ 1.73
CIITA-206ENST00000571190 UNC5CLQ8IV45 518 aa25.86■■□□□ 1.73
CIITA-206ENST00000571190 CABLES1Q8TDN4 633 aa25.86■■□□□ 1.73
CIITA-206ENST00000571190 TRAK1Q9UPV9 953 aa25.86■■□□□ 1.73
CIITA-206ENST00000571190 KIF1AQ12756 1690 aa25.85■■□□□ 1.73
CIITA-206ENST00000571190 PSME1Q06323 249 aa25.85■■□□□ 1.73
CIITA-206ENST00000571190 KDM2AQ9Y2K7 1162 aa25.85■■□□□ 1.73
CIITA-206ENST00000571190 TNS3Q68CZ2 1445 aa25.85■■□□□ 1.73
CIITA-206ENST00000571190 SBNO1A3KN83 1393 aa25.84■■□□□ 1.73
CIITA-206ENST00000571190 DCAF11Q8TEB1 546 aa25.84■■□□□ 1.73
CIITA-206ENST00000571190 PMFBP1Q8TBY8 1022 aa25.83■■□□□ 1.73
CIITA-206ENST00000571190 HRCP23327 699 aa25.82■■□□□ 1.72
CIITA-206ENST00000571190 HIRIP3Q9BW71 556 aaPredicted RBP25.82■■□□□ 1.72
CIITA-206ENST00000571190 ANKARQ7Z5J8 1434 aa25.81■■□□□ 1.72
CIITA-206ENST00000571190 PRR36Q9H6K5 1346 aa25.8■■□□□ 1.72
CIITA-206ENST00000571190 RALGAPBQ86X10 1494 aa25.79■■□□□ 1.72
CIITA-206ENST00000571190 MINK1Q8N4C8 1332 aaPredicted RBP25.79■■□□□ 1.72
CIITA-206ENST00000571190 PLEKHG5O94827 1062 aa25.78■■□□□ 1.72
CIITA-206ENST00000571190 LMOD2Q6P5Q4 547 aa25.77■■□□□ 1.72
CIITA-206ENST00000571190 STAC3Q96MF2 364 aa25.77■■□□□ 1.72
CIITA-206ENST00000571190 ADGRB2O60241 1585 aa25.77■■□□□ 1.72
CIITA-206ENST00000571190 USP32Q8NFA0 1604 aa25.77■■□□□ 1.72
CIITA-206ENST00000571190 HAP1P54257 671 aaPredicted RBP25.76■■□□□ 1.71
CIITA-206ENST00000571190 ARHGEF10O15013 1369 aa25.76■■□□□ 1.71
CIITA-206ENST00000571190 MARF1Q9Y4F3 1742 aaKnown RBP25.75■■□□□ 1.71
CIITA-206ENST00000571190 GLI3P10071 1580 aa25.75■■□□□ 1.71
CIITA-206ENST00000571190 WASLO00401 505 aaPredicted RBP25.75■■□□□ 1.71
CIITA-206ENST00000571190 FAM83GA6ND36 823 aa25.74■■□□□ 1.71
CIITA-206ENST00000571190 VPS72Q15906 364 aa25.74■■□□□ 1.71
CIITA-206ENST00000571190 CCDC125Q86Z20 511 aa25.72■■□□□ 1.71
CIITA-206ENST00000571190 RGPD8O14715 1765 aaPredicted RBP25.72■■□□□ 1.71
CIITA-206ENST00000571190 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.71■■□□□ 1.71
CIITA-206ENST00000571190 ONECUT3O60422 494 aaPredicted RBP25.7■■□□□ 1.7
CIITA-206ENST00000571190 TULP4Q9NRJ4 1543 aa25.69■■□□□ 1.7
CIITA-206ENST00000571190 SEPT12Q8IYM1 358 aa25.69■■□□□ 1.7
CIITA-206ENST00000571190 EIF3AQ14152 1382 aaKnown RBP25.68■■□□□ 1.7
CIITA-206ENST00000571190 GPRASP1Q5JY77 1395 aa25.68■■□□□ 1.7
CIITA-206ENST00000571190 NGDNQ8NEJ9 315 aaKnown RBP25.64■■□□□ 1.7
CIITA-206ENST00000571190 CCDC9Q9Y3X0 531 aaKnown RBP25.64■■□□□ 1.7
CIITA-206ENST00000571190 NUDT16Q96DE0 195 aaKnown RBP25.63■■□□□ 1.69
CIITA-206ENST00000571190 TRPM3Q9HCF6 1732 aaPredicted RBP25.63■■□□□ 1.69
CIITA-206ENST00000571190 BTG4Q9NY30 223 aa25.62■■□□□ 1.69
CIITA-206ENST00000571190 ZRANB1Q9UGI0 708 aa25.62■■□□□ 1.69
CIITA-206ENST00000571190 BLMP54132 1417 aaPredicted RBP25.62■■□□□ 1.69
CIITA-206ENST00000571190 EP400Q96L91 3159 aa25.61■■□□□ 1.69
CIITA-206ENST00000571190 ABCA3Q99758 1704 aa25.61■■□□□ 1.69
CIITA-206ENST00000571190 ATP7BP35670 1465 aa25.6■■□□□ 1.69
CIITA-206ENST00000571190 CDK19Q9BWU1 502 aa25.59■■□□□ 1.69
CIITA-206ENST00000571190 PAK3O75914 559 aaPredicted RBP25.58■■□□□ 1.69
CIITA-206ENST00000571190 NBPF1Q3BBV0 1214 aa25.58■■□□□ 1.69
CIITA-206ENST00000571190 KRT27Q7Z3Y8 459 aa25.58■■□□□ 1.69
CIITA-206ENST00000571190 DEFB132Q7Z7B7 95 aa25.58■■□□□ 1.69
CIITA-206ENST00000571190 PLCH1Q4KWH8 1693 aa25.58■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms