RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 ARHGAP23Q9P227 1491 aa9.42□□□□□ -0.9
VPS53-208ENST00000570650 LTKP29376 864 aa9.42□□□□□ -0.9
VPS53-208ENST00000570650 NLRP6P59044 892 aa9.42□□□□□ -0.9
VPS53-208ENST00000570650 SETD1AO15047 1707 aaKnown RBP9.42□□□□□ -0.9
VPS53-208ENST00000570650 UBR1Q8IWV7 1749 aa9.42□□□□□ -0.9
VPS53-208ENST00000570650 SLIT1O75093 1534 aa9.41□□□□□ -0.9
VPS53-208ENST00000570650 CAMSAP2Q08AD1 1489 aa9.41□□□□□ -0.9
VPS53-208ENST00000570650 NCOA2Q15596 1464 aa9.41□□□□□ -0.9
VPS53-208ENST00000570650 TSPY4P0CV99 314 aa9.41□□□□□ -0.9
VPS53-208ENST00000570650 TSPY10P0CW01 314 aa9.41□□□□□ -0.9
VPS53-208ENST00000570650 EID1Q9Y6B2 187 aa9.41□□□□□ -0.9
VPS53-208ENST00000570650 TMEM94Q12767 1356 aa9.4□□□□□ -0.9
VPS53-208ENST00000570650 ROBO1Q9Y6N7 1651 aa9.39□□□□□ -0.91
VPS53-208ENST00000570650 ARHGEF5Q12774 1597 aa9.39□□□□□ -0.91
VPS53-208ENST00000570650 LRRC9Q6ZRR7 1453 aa9.39□□□□□ -0.91
VPS53-208ENST00000570650 JCADQ9P266 1359 aa9.38□□□□□ -0.91
VPS53-208ENST00000570650 KCNA6P17658 529 aa9.38□□□□□ -0.91
VPS53-208ENST00000570650 UPF1Q92900 1129 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS53-208ENST00000570650 EIF2AK4Q9P2K8 1649 aaKnown RBP9.38□□□□□ -0.91
VPS53-208ENST00000570650 MAP3K1Q13233 1512 aa9.37□□□□□ -0.91
VPS53-208ENST00000570650 MAMSTRQ6ZN01 415 aa9.37□□□□□ -0.91
VPS53-208ENST00000570650 PROSER2Q86WR7 435 aaPredicted RBP9.37□□□□□ -0.91
VPS53-208ENST00000570650 L3MBTL3Q96JM7 780 aaPredicted RBP9.37□□□□□ -0.91
VPS53-208ENST00000570650 MROH1Q8NDA8 1641 aa9.37□□□□□ -0.91
VPS53-208ENST00000570650 CFAP65Q6ZU64 1925 aaKnown RBP9.37□□□□□ -0.91
VPS53-208ENST00000570650 TMEM2Q9UHN6 1383 aa9.37□□□□□ -0.91
VPS53-208ENST00000570650 SCUBE2Q9NQ36 999 aa9.36□□□□□ -0.91
VPS53-208ENST00000570650 BOLA1Q9Y3E2 137 aa9.36□□□□□ -0.91
VPS53-208ENST00000570650 MAST1Q9Y2H9 1570 aa9.36□□□□□ -0.91
VPS53-208ENST00000570650 CEP152O94986 1710 aa9.36□□□□□ -0.91
VPS53-208ENST00000570650 PPP1R37O75864 691 aa9.35□□□□□ -0.91
VPS53-208ENST00000570650 ARHGAP31Q2M1Z3 1444 aa9.35□□□□□ -0.91
VPS53-208ENST00000570650 ZNF772Q68DY9 489 aaPredicted RBP9.35□□□□□ -0.91
VPS53-208ENST00000570650 RBM33Q96EV2 1170 aaKnown RBP9.35□□□□□ -0.91
VPS53-208ENST00000570650 PRDM15P57071 1507 aaPredicted RBP9.35□□□□□ -0.91
VPS53-208ENST00000570650 MSH6P52701 1360 aa9.35□□□□□ -0.91
VPS53-208ENST00000570650 NKTRP30414 1462 aaKnown RBP9.34□□□□□ -0.91
VPS53-208ENST00000570650 PHLPP1O60346 1717 aa9.34□□□□□ -0.91
VPS53-208ENST00000570650 MICALL2Q8IY33 904 aa9.34□□□□□ -0.91
VPS53-208ENST00000570650 TRIM52Q96A61 297 aa9.34□□□□□ -0.91
VPS53-208ENST00000570650 TMEM121BQ9BXQ6 578 aaPredicted RBP9.34□□□□□ -0.91
VPS53-208ENST00000570650 PIK3C2BO00750 1634 aa9.34□□□□□ -0.91
VPS53-208ENST00000570650 SPATA31A6Q5VVP1 1343 aa9.33□□□□□ -0.92
VPS53-208ENST00000570650 MEX3CQ5U5Q3 659 aaKnown RBP9.33□□□□□ -0.92
VPS53-208ENST00000570650 SLC26A8Q96RN1 970 aa9.33□□□□□ -0.92
VPS53-208ENST00000570650 SLAIN2Q9P270 581 aa9.33□□□□□ -0.92
VPS53-208ENST00000570650 NWD1Q149M9 1564 aa9.33□□□□□ -0.92
VPS53-208ENST00000570650 FGD6Q6ZV73 1430 aa9.32□□□□□ -0.92
VPS53-208ENST00000570650 EFCAB6Q5THR3 1501 aa9.32□□□□□ -0.92
VPS53-208ENST00000570650 GTPBP6O43824 516 aaPredicted RBP9.32□□□□□ -0.92
VPS53-208ENST00000570650 TET3O43151 1660 aa9.32□□□□□ -0.92
VPS53-208ENST00000570650 DUOX2Q9NRD8 1548 aa9.31□□□□□ -0.92
VPS53-208ENST00000570650 LRP6O75581 1613 aa9.31□□□□□ -0.92
VPS53-208ENST00000570650 COL16A1Q07092 1604 aaPredicted RBP9.31□□□□□ -0.92
VPS53-208ENST00000570650 C3orf67Q6ZVT6 689 aa9.31□□□□□ -0.92
VPS53-208ENST00000570650 BBXQ8WY36 941 aaPredicted RBP9.31□□□□□ -0.92
VPS53-208ENST00000570650 KDM5AP29375 1690 aaKnown RBP9.3□□□□□ -0.92
VPS53-208ENST00000570650 G3V3G9 751 aa9.3□□□□□ -0.92
VPS53-208ENST00000570650 RXRBP28702 533 aa9.3□□□□□ -0.92
VPS53-208ENST00000570650 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.3□□□□□ -0.92
VPS53-208ENST00000570650 CDK12Q9NYV4 1490 aaPredicted RBP9.29□□□□□ -0.92
VPS53-208ENST00000570650 IDI1Q13907 227 aa9.29□□□□□ -0.92
VPS53-208ENST00000570650 SLAIN1Q8ND83 568 aa9.29□□□□□ -0.92
VPS53-208ENST00000570650 BCANQ96GW7 911 aa9.29□□□□□ -0.92
VPS53-208ENST00000570650 ERBINQ96RT1 1412 aa9.29□□□□□ -0.92
VPS53-208ENST00000570650 KANK1Q14678 1352 aa9.27□□□□□ -0.93
VPS53-208ENST00000570650 KIF15Q9NS87 1388 aa9.27□□□□□ -0.93
VPS53-208ENST00000570650 NCOA3Q9Y6Q9 1424 aa9.27□□□□□ -0.93
VPS53-208ENST00000570650 AHDC1Q5TGY3 1603 aaPredicted RBP9.27□□□□□ -0.93
VPS53-208ENST00000570650 SHPRHQ149N8 1683 aa9.26□□□□□ -0.93
VPS53-208ENST00000570650 ADGRB3O60242 1522 aa9.26□□□□□ -0.93
VPS53-208ENST00000570650 MYOM3Q5VTT5 1437 aa9.26□□□□□ -0.93
VPS53-208ENST00000570650 TMEM92Q6UXU6 159 aa9.26□□□□□ -0.93
VPS53-208ENST00000570650 NOS1P29475 1434 aa9.25□□□□□ -0.93
VPS53-208ENST00000570650 C14orf37Q86TY3 774 aa9.25□□□□□ -0.93
VPS53-208ENST00000570650 CADPS2Q86UW7 1296 aa9.25□□□□□ -0.93
VPS53-208ENST00000570650 RRP7BPQ9NSQ0 103 aa9.25□□□□□ -0.93
VPS53-208ENST00000570650 RYDENQ9NUL5 291 aaKnown RBP9.25□□□□□ -0.93
VPS53-208ENST00000570650 LMTK2Q8IWU2 1503 aa9.25□□□□□ -0.93
VPS53-208ENST00000570650 PLEKHG1Q9ULL1 1385 aa9.24□□□□□ -0.93
VPS53-208ENST00000570650 CHD2O14647 1828 aaKnown RBP9.24□□□□□ -0.93
VPS53-208ENST00000570650 NUTM2BA6NNL0 878 aaPredicted RBP9.24□□□□□ -0.93
VPS53-208ENST00000570650 NUTM2EB1AL46 878 aaPredicted RBP9.24□□□□□ -0.93
VPS53-208ENST00000570650 ATF3P18847 181 aa9.24□□□□□ -0.93
VPS53-208ENST00000570650 NUTM2AQ8IVF1 878 aaPredicted RBP9.24□□□□□ -0.93
VPS53-208ENST00000570650 SLC52A1Q9NWF4 448 aa9.24□□□□□ -0.93
VPS53-208ENST00000570650 AFF2P51816 1311 aa9.24□□□□□ -0.93
VPS53-208ENST00000570650 PPP1R15AO75807 674 aaPredicted RBP9.23□□□□□ -0.93
VPS53-208ENST00000570650 HDGFP51858 240 aaKnown RBP9.23□□□□□ -0.93
VPS53-208ENST00000570650 C19orf44Q9H6X5 657 aa9.23□□□□□ -0.93
VPS53-208ENST00000570650 RGS12O14924 1447 aa9.22□□□□□ -0.93
VPS53-208ENST00000570650 ABCC5O15440 1437 aa9.22□□□□□ -0.93
VPS53-208ENST00000570650 ZFYVE9O95405 1425 aa9.22□□□□□ -0.93
VPS53-208ENST00000570650 DIP2AQ14689 1571 aa9.22□□□□□ -0.93
VPS53-208ENST00000570650 TBX22Q9Y458 520 aa9.22□□□□□ -0.93
VPS53-208ENST00000570650 RIMS2Q9UQ26 1411 aa9.22□□□□□ -0.93
VPS53-208ENST00000570650 RBM6P78332 1123 aaKnown RBP9.21□□□□□ -0.94
VPS53-208ENST00000570650 BRINP3Q76B58 766 aa9.21□□□□□ -0.94
VPS53-208ENST00000570650 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.21□□□□□ -0.94
VPS53-208ENST00000570650 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms