RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 SPATA31E1Q6ZUB1 1445 aa15.19■□□□□ 0.02
VPS39-211ENST00000568755 ORAI2Q96SN7 254 aa15.19■□□□□ 0.02
VPS39-211ENST00000568755 EP400Q96L91 3159 aa15.19■□□□□ 0.02
VPS39-211ENST00000568755 CCDC144AA2RUR9 1427 aa15.17■□□□□ 0.02
VPS39-211ENST00000568755 RGS12O14924 1447 aa15.17■□□□□ 0.02
VPS39-211ENST00000568755 TECPR2O15040 1411 aa15.17■□□□□ 0.02
VPS39-211ENST00000568755 C8orf37Q96NL8 207 aa15.17■□□□□ 0.02
VPS39-211ENST00000568755 ADGRF5Q8IZF2 1346 aa15.17■□□□□ 0.02
VPS39-211ENST00000568755 FMN2Q9NZ56 1722 aa15.15■□□□□ 0.02
VPS39-211ENST00000568755 RGPD8O14715 1765 aaPredicted RBP15.15■□□□□ 0.02
VPS39-211ENST00000568755 PXDNQ92626 1479 aa15.14■□□□□ 0.01
VPS39-211ENST00000568755 SRCAPQ6ZRS2 3230 aa15.14■□□□□ 0.01
VPS39-211ENST00000568755 PIK3C2GO75747 1445 aa15.14■□□□□ 0.01
VPS39-211ENST00000568755 MYOM2P54296 1465 aa15.14■□□□□ 0.01
VPS39-211ENST00000568755 LRPPRCP42704 1394 aaKnown RBP15.13■□□□□ 0.01
VPS39-211ENST00000568755 ANKRD30BQ9BXX2 1392 aa15.13■□□□□ 0.01
VPS39-211ENST00000568755 ADAMTS2O95450 1211 aa15.13■□□□□ 0.01
VPS39-211ENST00000568755 RBM6P78332 1123 aaKnown RBP15.13■□□□□ 0.01
VPS39-211ENST00000568755 QTRT2Q9H974 415 aaKnown RBP15.13■□□□□ 0.01
VPS39-211ENST00000568755 MPHOSPH9Q99550 1183 aa15.12■□□□□ 0.01
VPS39-211ENST00000568755 ABCC11Q96J66 1382 aa15.11■□□□□ 0.01
VPS39-211ENST00000568755 NGLY1Q96IV0 654 aa15.11■□□□□ 0.01
VPS39-211ENST00000568755 KIF1AQ12756 1690 aa15.11■□□□□ 0.01
VPS39-211ENST00000568755 NPHP3Q7Z494 1330 aa15.11■□□□□ 0.01
VPS39-211ENST00000568755 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.1■□□□□ 0.01
VPS39-211ENST00000568755 RGL3Q3MIN7 710 aa15.1■□□□□ 0.01
VPS39-211ENST00000568755 PLEKHH1Q9ULM0 1364 aa15.1■□□□□ 0.01
VPS39-211ENST00000568755 ATRNO75882 1429 aa15.09■□□□□ 0.01
VPS39-211ENST00000568755 NRXN1Q9ULB1 1477 aa15.09■□□□□ 0.01
VPS39-211ENST00000568755 ESCO1Q5FWF5 840 aa15.09■□□□□ 0.01
VPS39-211ENST00000568755 WAPLQ7Z5K2 1190 aa15.09■□□□□ 0.01
VPS39-211ENST00000568755 FNBP4Q8N3X1 1017 aaPredicted RBP15.09■□□□□ 0.01
VPS39-211ENST00000568755 YTHDC2Q9H6S0 1430 aaKnown RBP15.09■□□□□ 0.01
VPS39-211ENST00000568755 STK26Q9P289 416 aa15.08■□□□□ 0
VPS39-211ENST00000568755 TMEM132EQ6IEE7 984 aa15.07■□□□□ 0
VPS39-211ENST00000568755 USP21Q9UK80 565 aa15.07■□□□□ 0
VPS39-211ENST00000568755 FOXO3O43524 673 aa15.06■□□□□ 0
VPS39-211ENST00000568755 TRPC5Q9UL62 973 aaPredicted RBP15.06■□□□□ 0
VPS39-211ENST00000568755 BCL9LQ86UU0 1499 aa15.06■□□□□ 0
VPS39-211ENST00000568755 XPCQ01831 940 aaPredicted RBP15.05■□□□□ -0
VPS39-211ENST00000568755 ABCA3Q99758 1704 aa15.04■□□□□ -0
VPS39-211ENST00000568755 USP32Q8NFA0 1604 aa15.04■□□□□ -0
VPS39-211ENST00000568755 NUTM2FA1L443 756 aa15.04■□□□□ -0
VPS39-211ENST00000568755 MAPK8IP2Q13387 824 aaPredicted RBP15.04■□□□□ -0
VPS39-211ENST00000568755 SIRT1Q96EB6 747 aa15.03■□□□□ -0
VPS39-211ENST00000568755 C14orf93Q9H972 538 aaKnown RBP15.03■□□□□ -0
VPS39-211ENST00000568755 BRWD3Q6RI45 1802 aa15.03■□□□□ -0
VPS39-211ENST00000568755 ATAD2Q6PL18 1390 aa15.02■□□□□ -0
VPS39-211ENST00000568755 ACIN1Q9UKV3 1341 aaKnown RBP15.02■□□□□ -0
VPS39-211ENST00000568755 SPATA31A3Q5VYP0 1347 aa15.01□□□□□ -0.01
VPS39-211ENST00000568755 ADGRB2O60241 1585 aa15.01□□□□□ -0.01
VPS39-211ENST00000568755 GLI3P10071 1580 aa15.01□□□□□ -0.01
VPS39-211ENST00000568755 SLIT2O94813 1529 aa15.01□□□□□ -0.01
VPS39-211ENST00000568755 DLC1Q96QB1 1528 aa15.01□□□□□ -0.01
VPS39-211ENST00000568755 PLCH1Q4KWH8 1693 aa15□□□□□ -0.01
VPS39-211ENST00000568755 NWD2Q9ULI1 1742 aa15□□□□□ -0.01
VPS39-211ENST00000568755 ADGRB1O14514 1584 aa14.99□□□□□ -0.01
VPS39-211ENST00000568755 CFAP70Q5T0N1 1121 aa14.99□□□□□ -0.01
VPS39-211ENST00000568755 DHX57Q6P158 1386 aaKnown RBP14.98□□□□□ -0.01
VPS39-211ENST00000568755 TRPM3Q9HCF6 1732 aaPredicted RBP14.98□□□□□ -0.01
VPS39-211ENST00000568755 TNS3Q68CZ2 1445 aa14.98□□□□□ -0.01
VPS39-211ENST00000568755 RAB3GAP2Q9H2M9 1393 aa14.98□□□□□ -0.01
VPS39-211ENST00000568755 KRT28Q7Z3Y7 464 aa14.97□□□□□ -0.01
VPS39-211ENST00000568755 RALGAPBQ86X10 1494 aa14.96□□□□□ -0.01
VPS39-211ENST00000568755 GJD4Q96KN9 370 aaPredicted RBP14.96□□□□□ -0.01
VPS39-211ENST00000568755 PHF8Q9UPP1 1060 aa14.96□□□□□ -0.01
VPS39-211ENST00000568755 ANKARQ7Z5J8 1434 aa14.95□□□□□ -0.02
VPS39-211ENST00000568755 PPP4R3CPQ6ZMV5 832 aa14.95□□□□□ -0.02
VPS39-211ENST00000568755 UNC5CLQ8IV45 518 aa14.95□□□□□ -0.02
VPS39-211ENST00000568755 PRAM1Q96QH2 718 aa14.95□□□□□ -0.02
VPS39-211ENST00000568755 ALS2Q96Q42 1657 aa14.95□□□□□ -0.02
VPS39-211ENST00000568755 SBNO1A3KN83 1393 aa14.95□□□□□ -0.02
VPS39-211ENST00000568755 NRAPQ86VF7 1730 aa14.94□□□□□ -0.02
VPS39-211ENST00000568755 CRYBG1Q9Y4K1 1723 aa14.94□□□□□ -0.02
VPS39-211ENST00000568755 ARHGEF28Q8N1W1 1705 aaKnown RBP14.93□□□□□ -0.02
VPS39-211ENST00000568755 PSME1Q06323 249 aa14.92□□□□□ -0.02
VPS39-211ENST00000568755 SAFB2Q14151 953 aaKnown RBP eCLIP14.92□□□□□ -0.02
VPS39-211ENST00000568755 ARHGEF10O15013 1369 aa14.91□□□□□ -0.02
VPS39-211ENST00000568755 TULP4Q9NRJ4 1543 aa14.91□□□□□ -0.02
VPS39-211ENST00000568755 ITSN1Q15811 1721 aa14.9□□□□□ -0.02
VPS39-211ENST00000568755 CCDC125Q86Z20 511 aa14.9□□□□□ -0.02
VPS39-211ENST00000568755 CABLES1Q8TDN4 633 aa14.9□□□□□ -0.02
VPS39-211ENST00000568755 POGKQ9P215 609 aa14.89□□□□□ -0.03
VPS39-211ENST00000568755 COL14A1Q05707 1796 aaKnown RBP14.88□□□□□ -0.03
VPS39-211ENST00000568755 VPS72Q15906 364 aa14.88□□□□□ -0.03
VPS39-211ENST00000568755 PMFBP1Q8TBY8 1022 aa14.88□□□□□ -0.03
VPS39-211ENST00000568755 PRR36Q9H6K5 1346 aa14.88□□□□□ -0.03
VPS39-211ENST00000568755 BLMP54132 1417 aaPredicted RBP14.87□□□□□ -0.03
VPS39-211ENST00000568755 TRAK1Q9UPV9 953 aa14.87□□□□□ -0.03
VPS39-211ENST00000568755 EIF3AQ14152 1382 aaKnown RBP14.86□□□□□ -0.03
VPS39-211ENST00000568755 HAP1P54257 671 aaPredicted RBP14.86□□□□□ -0.03
VPS39-211ENST00000568755 HIRIP3Q9BW71 556 aaPredicted RBP14.86□□□□□ -0.03
VPS39-211ENST00000568755 ONECUT3O60422 494 aaPredicted RBP14.85□□□□□ -0.03
VPS39-211ENST00000568755 LMOD2Q6P5Q4 547 aa14.85□□□□□ -0.03
VPS39-211ENST00000568755 DCAF11Q8TEB1 546 aa14.85□□□□□ -0.03
VPS39-211ENST00000568755 KIAA1210Q9ULL0 1709 aa14.85□□□□□ -0.03
VPS39-211ENST00000568755 MINK1Q8N4C8 1332 aaPredicted RBP14.85□□□□□ -0.03
VPS39-211ENST00000568755 TOPAZ1Q8N9V7 1692 aa14.84□□□□□ -0.03
VPS39-211ENST00000568755 FAM83GA6ND36 823 aa14.84□□□□□ -0.03
VPS39-211ENST00000568755 SEPT12Q8IYM1 358 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms