RNA–Protein interactions for RNA: ENST00000568676.5

HERPUD1-215, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 571 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-215ENST00000568676 CDC42BPGQ6DT37 1551 aa23.69■■□□□ 1.38
HERPUD1-215ENST00000568676 FNBP4Q8N3X1 1017 aaPredicted RBP23.68■■□□□ 1.38
HERPUD1-215ENST00000568676 USP21Q9UK80 565 aa23.68■■□□□ 1.38
HERPUD1-215ENST00000568676 ATAD2Q6PL18 1390 aa23.66■■□□□ 1.38
HERPUD1-215ENST00000568676 LRPPRCP42704 1394 aaKnown RBP23.65■■□□□ 1.38
HERPUD1-215ENST00000568676 CCDC144AA2RUR9 1427 aa23.63■■□□□ 1.37
HERPUD1-215ENST00000568676 TECPR2O15040 1411 aa23.63■■□□□ 1.37
HERPUD1-215ENST00000568676 FOXD1Q16676 465 aa23.63■■□□□ 1.37
HERPUD1-215ENST00000568676 ESCO1Q5FWF5 840 aa23.63■■□□□ 1.37
HERPUD1-215ENST00000568676 MYOM2P54296 1465 aa23.62■■□□□ 1.37
HERPUD1-215ENST00000568676 ANKRD30BQ9BXX2 1392 aa23.62■■□□□ 1.37
HERPUD1-215ENST00000568676 ATRNO75882 1429 aa23.61■■□□□ 1.37
HERPUD1-215ENST00000568676 PXDNQ92626 1479 aa23.61■■□□□ 1.37
HERPUD1-215ENST00000568676 ABCC11Q96J66 1382 aa23.58■■□□□ 1.37
HERPUD1-215ENST00000568676 ADGRF5Q8IZF2 1346 aa23.58■■□□□ 1.36
HERPUD1-215ENST00000568676 SPATA31E1Q6ZUB1 1445 aa23.57■■□□□ 1.36
HERPUD1-215ENST00000568676 FOXO3O43524 673 aa23.56■■□□□ 1.36
HERPUD1-215ENST00000568676 CCDC125Q86Z20 511 aa23.56■■□□□ 1.36
HERPUD1-215ENST00000568676 ACIN1Q9UKV3 1341 aaKnown RBP23.56■■□□□ 1.36
HERPUD1-215ENST00000568676 KNDC1Q76NI1 1749 aa23.55■■□□□ 1.36
HERPUD1-215ENST00000568676 BCL9LQ86UU0 1499 aa23.54■■□□□ 1.36
HERPUD1-215ENST00000568676 MARF1Q9Y4F3 1742 aaKnown RBP23.53■■□□□ 1.36
HERPUD1-215ENST00000568676 IFT172Q9UG01 1749 aa23.53■■□□□ 1.36
HERPUD1-215ENST00000568676 PIK3C2GO75747 1445 aa23.52■■□□□ 1.36
HERPUD1-215ENST00000568676 RGL3Q3MIN7 710 aa23.52■■□□□ 1.36
HERPUD1-215ENST00000568676 SIRT1Q96EB6 747 aa23.52■■□□□ 1.36
HERPUD1-215ENST00000568676 STK26Q9P289 416 aa23.52■■□□□ 1.36
HERPUD1-215ENST00000568676 WAPLQ7Z5K2 1190 aa23.51■■□□□ 1.35
HERPUD1-215ENST00000568676 KIF1AQ12756 1690 aa23.51■■□□□ 1.35
HERPUD1-215ENST00000568676 GJD4Q96KN9 370 aaPredicted RBP23.5■■□□□ 1.35
HERPUD1-215ENST00000568676 MPHOSPH9Q99550 1183 aa23.5■■□□□ 1.35
HERPUD1-215ENST00000568676 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.49■■□□□ 1.35
HERPUD1-215ENST00000568676 YTHDC2Q9H6S0 1430 aaKnown RBP23.49■■□□□ 1.35
HERPUD1-215ENST00000568676 FMN2Q9NZ56 1722 aa23.48■■□□□ 1.35
HERPUD1-215ENST00000568676 XPCQ01831 940 aaPredicted RBP23.48■■□□□ 1.35
HERPUD1-215ENST00000568676 SPATA31A3Q5VYP0 1347 aa23.48■■□□□ 1.35
HERPUD1-215ENST00000568676 ZRANB1Q9UGI0 708 aa23.47■■□□□ 1.35
HERPUD1-215ENST00000568676 TMEM132EQ6IEE7 984 aa23.46■■□□□ 1.35
HERPUD1-215ENST00000568676 UNC5CLQ8IV45 518 aa23.46■■□□□ 1.35
HERPUD1-215ENST00000568676 SLIT2O94813 1529 aa23.45■■□□□ 1.34
HERPUD1-215ENST00000568676 PLEKHH1Q9ULM0 1364 aa23.45■■□□□ 1.34
HERPUD1-215ENST00000568676 NUTM2FA1L443 756 aa23.45■■□□□ 1.34
HERPUD1-215ENST00000568676 PSME1Q06323 249 aa23.43■■□□□ 1.34
HERPUD1-215ENST00000568676 C14orf93Q9H972 538 aaKnown RBP23.43■■□□□ 1.34
HERPUD1-215ENST00000568676 KRT28Q7Z3Y7 464 aa23.42■■□□□ 1.34
HERPUD1-215ENST00000568676 DHX57Q6P158 1386 aaKnown RBP23.41■■□□□ 1.34
HERPUD1-215ENST00000568676 USP32Q8NFA0 1604 aa23.41■■□□□ 1.34
HERPUD1-215ENST00000568676 RALGAPBQ86X10 1494 aa23.4■■□□□ 1.34
HERPUD1-215ENST00000568676 NRXN1Q9ULB1 1477 aa23.4■■□□□ 1.34
HERPUD1-215ENST00000568676 TNS3Q68CZ2 1445 aa23.4■■□□□ 1.34
HERPUD1-215ENST00000568676 PHF8Q9UPP1 1060 aa23.39■■□□□ 1.33
HERPUD1-215ENST00000568676 HAP1P54257 671 aaPredicted RBP23.38■■□□□ 1.33
HERPUD1-215ENST00000568676 EP400Q96L91 3159 aa23.38■■□□□ 1.33
HERPUD1-215ENST00000568676 SBNO1A3KN83 1393 aa23.38■■□□□ 1.33
HERPUD1-215ENST00000568676 GLI3P10071 1580 aa23.37■■□□□ 1.33
HERPUD1-215ENST00000568676 BLMP54132 1417 aaPredicted RBP23.37■■□□□ 1.33
HERPUD1-215ENST00000568676 ARHGEF10O15013 1369 aa23.37■■□□□ 1.33
HERPUD1-215ENST00000568676 VPS72Q15906 364 aa23.34■■□□□ 1.33
HERPUD1-215ENST00000568676 ANKARQ7Z5J8 1434 aa23.33■■□□□ 1.33
HERPUD1-215ENST00000568676 DLC1Q96QB1 1528 aa23.33■■□□□ 1.33
HERPUD1-215ENST00000568676 CFAP70Q5T0N1 1121 aa23.33■■□□□ 1.33
HERPUD1-215ENST00000568676 NWD2Q9ULI1 1742 aa23.33■■□□□ 1.32
HERPUD1-215ENST00000568676 SRCAPQ6ZRS2 3230 aa23.33■■□□□ 1.32
HERPUD1-215ENST00000568676 ONECUT3O60422 494 aaPredicted RBP23.31■■□□□ 1.32
HERPUD1-215ENST00000568676 SF3B2Q13435 895 aaKnown RBP23.31■■□□□ 1.32
HERPUD1-215ENST00000568676 PRAM1Q96QH2 718 aa23.31■■□□□ 1.32
HERPUD1-215ENST00000568676 RGPD8O14715 1765 aaPredicted RBP23.29■■□□□ 1.32
HERPUD1-215ENST00000568676 EIF3AQ14152 1382 aaKnown RBP23.29■■□□□ 1.32
HERPUD1-215ENST00000568676 ADGRB2O60241 1585 aa23.29■■□□□ 1.32
HERPUD1-215ENST00000568676 SEPT12Q8IYM1 358 aa23.29■■□□□ 1.32
HERPUD1-215ENST00000568676 POGKQ9P215 609 aa23.29■■□□□ 1.32
HERPUD1-215ENST00000568676 PLCH1Q4KWH8 1693 aa23.28■■□□□ 1.32
HERPUD1-215ENST00000568676 LMOD2Q6P5Q4 547 aa23.27■■□□□ 1.32
HERPUD1-215ENST00000568676 ABCA3Q99758 1704 aa23.26■■□□□ 1.31
HERPUD1-215ENST00000568676 CABLES1Q8TDN4 633 aa23.26■■□□□ 1.31
HERPUD1-215ENST00000568676 SAFB2Q14151 953 aaKnown RBP eCLIP23.25■■□□□ 1.31
HERPUD1-215ENST00000568676 CCDC9Q9Y3X0 531 aaKnown RBP23.25■■□□□ 1.31
HERPUD1-215ENST00000568676 BRWD3Q6RI45 1802 aa23.24■■□□□ 1.31
HERPUD1-215ENST00000568676 KRT27Q7Z3Y8 459 aa23.24■■□□□ 1.31
HERPUD1-215ENST00000568676 STAC3Q96MF2 364 aa23.24■■□□□ 1.31
HERPUD1-215ENST00000568676 GPRASP1Q5JY77 1395 aa23.23■■□□□ 1.31
HERPUD1-215ENST00000568676 ADGRB1O14514 1584 aa23.23■■□□□ 1.31
HERPUD1-215ENST00000568676 PMFBP1Q8TBY8 1022 aa23.22■■□□□ 1.31
HERPUD1-215ENST00000568676 FAM83GA6ND36 823 aa23.21■■□□□ 1.31
HERPUD1-215ENST00000568676 DEFB132Q7Z7B7 95 aa23.19■■□□□ 1.3
HERPUD1-215ENST00000568676 TRPM3Q9HCF6 1732 aaPredicted RBP23.19■■□□□ 1.3
HERPUD1-215ENST00000568676 TULP4Q9NRJ4 1543 aa23.18■■□□□ 1.3
HERPUD1-215ENST00000568676 COL14A1Q05707 1796 aaKnown RBP23.17■■□□□ 1.3
HERPUD1-215ENST00000568676 TRAK1Q9UPV9 953 aa23.17■■□□□ 1.3
HERPUD1-215ENST00000568676 NRAPQ86VF7 1730 aa23.16■■□□□ 1.3
HERPUD1-215ENST00000568676 ALS2Q96Q42 1657 aa23.16■■□□□ 1.3
HERPUD1-215ENST00000568676 PLEKHG5O94827 1062 aa23.16■■□□□ 1.3
HERPUD1-215ENST00000568676 BAG6P46379 1132 aa23.16■■□□□ 1.3
HERPUD1-215ENST00000568676 BTG4Q9NY30 223 aa23.16■■□□□ 1.3
HERPUD1-215ENST00000568676 RAB3GAP2Q9H2M9 1393 aa23.15■■□□□ 1.3
HERPUD1-215ENST00000568676 A0A0G2JS52 829 aa23.15■■□□□ 1.3
HERPUD1-215ENST00000568676 WASLO00401 505 aaPredicted RBP23.15■■□□□ 1.3
HERPUD1-215ENST00000568676 MYT1Q01538 1121 aa23.15■■□□□ 1.3
HERPUD1-215ENST00000568676 HIRIP3Q9BW71 556 aaPredicted RBP23.13■■□□□ 1.29
HERPUD1-215ENST00000568676 MINK1Q8N4C8 1332 aaPredicted RBP23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms