RNA–Protein interactions for RNA: ENST00000568566.5

TSC2-223, Transcript of TSC complex subunit 2, human

TSL 3

Gene TSC2, Length 542 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TSC2-223	ENST00000568566	ATRN	O75882	1429 aa		12.45	□□□□□ -0.42
TSC2-223	ENST00000568566	COL22A1	Q8NFW1	1626 aa	Predicted RBP	12.45	□□□□□ -0.42
TSC2-223	ENST00000568566	PCGF6	Q9BYE7	350 aa		12.44	□□□□□ -0.42
TSC2-223	ENST00000568566	MYOM2	P54296	1465 aa		12.43	□□□□□ -0.42
TSC2-223	ENST00000568566	MPHOSPH9	Q99550	1183 aa		12.43	□□□□□ -0.42
TSC2-223	ENST00000568566	FNBP4	Q8N3X1	1017 aa	Predicted RBP	12.42	□□□□□ -0.42
TSC2-223	ENST00000568566	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.42	□□□□□ -0.42
TSC2-223	ENST00000568566	ZRANB1	Q9UGI0	708 aa		12.42	□□□□□ -0.42
TSC2-223	ENST00000568566	XPC	Q01831	940 aa	Predicted RBP	12.41	□□□□□ -0.42
TSC2-223	ENST00000568566	CDC42BPG	Q6DT37	1551 aa		12.41	□□□□□ -0.42
TSC2-223	ENST00000568566	PRAG1	Q86YV5	1406 aa		12.41	□□□□□ -0.42
TSC2-223	ENST00000568566	MARF1	Q9Y4F3	1742 aa	Known RBP	12.41	□□□□□ -0.42
TSC2-223	ENST00000568566	BCL9L	Q86UU0	1499 aa		12.4	□□□□□ -0.42
TSC2-223	ENST00000568566	PXDN	Q92626	1479 aa		12.4	□□□□□ -0.42
TSC2-223	ENST00000568566	NPHP3	Q7Z494	1330 aa		12.39	□□□□□ -0.43
TSC2-223	ENST00000568566	PPL	O60437	1756 aa		12.39	□□□□□ -0.43
TSC2-223	ENST00000568566	VGF	O15240	615 aa	Predicted RBP	12.39	□□□□□ -0.43
TSC2-223	ENST00000568566	ESCO1	Q5FWF5	840 aa		12.39	□□□□□ -0.43
TSC2-223	ENST00000568566	FOXO3	O43524	673 aa		12.37	□□□□□ -0.43
TSC2-223	ENST00000568566	GLI3	P10071	1580 aa		12.36	□□□□□ -0.43
TSC2-223	ENST00000568566	NUTM2F	A1L443	756 aa		12.36	□□□□□ -0.43
TSC2-223	ENST00000568566	GJD4	Q96KN9	370 aa	Predicted RBP	12.36	□□□□□ -0.43
TSC2-223	ENST00000568566	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	12.36	□□□□□ -0.43
TSC2-223	ENST00000568566	RALGAPB	Q86X10	1494 aa		12.35	□□□□□ -0.43
TSC2-223	ENST00000568566	CCDC125	Q86Z20	511 aa		12.35	□□□□□ -0.43
TSC2-223	ENST00000568566	RPGRIP1L	Q68CZ1	1315 aa		12.35	□□□□□ -0.43
TSC2-223	ENST00000568566	HRC	P23327	699 aa		12.34	□□□□□ -0.43
TSC2-223	ENST00000568566	USP32	Q8NFA0	1604 aa		12.33	□□□□□ -0.43
TSC2-223	ENST00000568566	BRWD3	Q6RI45	1802 aa		12.33	□□□□□ -0.44
TSC2-223	ENST00000568566	STK26	Q9P289	416 aa		12.33	□□□□□ -0.44
TSC2-223	ENST00000568566	BLM	P54132	1417 aa	Predicted RBP	12.33	□□□□□ -0.44
TSC2-223	ENST00000568566	SLIT2	O94813	1529 aa		12.32	□□□□□ -0.44
TSC2-223	ENST00000568566	LRPPRC	P42704	1394 aa	Known RBP	12.32	□□□□□ -0.44
TSC2-223	ENST00000568566	WAPL	Q7Z5K2	1190 aa		12.32	□□□□□ -0.44
TSC2-223	ENST00000568566	UNC5CL	Q8IV45	518 aa		12.32	□□□□□ -0.44
TSC2-223	ENST00000568566	KIF1A	Q12756	1690 aa		12.32	□□□□□ -0.44
TSC2-223	ENST00000568566	PLEKHH1	Q9ULM0	1364 aa		12.31	□□□□□ -0.44
TSC2-223	ENST00000568566	FMN2	Q9NZ56	1722 aa		12.31	□□□□□ -0.44
TSC2-223	ENST00000568566	TECPR2	O15040	1411 aa		12.31	□□□□□ -0.44
TSC2-223	ENST00000568566	DEFB132	Q7Z7B7	95 aa		12.31	□□□□□ -0.44
TSC2-223	ENST00000568566	ADGRF5	Q8IZF2	1346 aa		12.31	□□□□□ -0.44
TSC2-223	ENST00000568566	CCDC144A	A2RUR9	1427 aa		12.3	□□□□□ -0.44
TSC2-223	ENST00000568566	PLEKHG5	O94827	1062 aa		12.3	□□□□□ -0.44
TSC2-223	ENST00000568566	KNDC1	Q76NI1	1749 aa		12.3	□□□□□ -0.44
TSC2-223	ENST00000568566	SPATA31A3	Q5VYP0	1347 aa		12.3	□□□□□ -0.44
TSC2-223	ENST00000568566	DHX57	Q6P158	1386 aa	Known RBP	12.3	□□□□□ -0.44
TSC2-223	ENST00000568566	ANKRD30B	Q9BXX2	1392 aa		12.3	□□□□□ -0.44
TSC2-223	ENST00000568566	PLCH1	Q4KWH8	1693 aa		12.29	□□□□□ -0.44
TSC2-223	ENST00000568566	SIN3A	Q96ST3	1273 aa		12.29	□□□□□ -0.44
TSC2-223	ENST00000568566	HAP1	P54257	671 aa	Predicted RBP	12.28	□□□□□ -0.44
TSC2-223	ENST00000568566	TMEM132E	Q6IEE7	984 aa		12.28	□□□□□ -0.44
TSC2-223	ENST00000568566	SEPT12	Q8IYM1	358 aa		12.28	□□□□□ -0.44
TSC2-223	ENST00000568566	LRP5	O75197	1615 aa		12.28	□□□□□ -0.44
TSC2-223	ENST00000568566	IFT172	Q9UG01	1749 aa		12.28	□□□□□ -0.44
TSC2-223	ENST00000568566	TNS3	Q68CZ2	1445 aa		12.28	□□□□□ -0.44
TSC2-223	ENST00000568566	SF3B2	Q13435	895 aa	Known RBP	12.27	□□□□□ -0.45
TSC2-223	ENST00000568566	RGL3	Q3MIN7	710 aa		12.27	□□□□□ -0.45
TSC2-223	ENST00000568566	CABLES1	Q8TDN4	633 aa		12.27	□□□□□ -0.45
TSC2-223	ENST00000568566	CCDC9	Q9Y3X0	531 aa	Known RBP	12.27	□□□□□ -0.45
TSC2-223	ENST00000568566	ABCA3	Q99758	1704 aa		12.27	□□□□□ -0.45
TSC2-223	ENST00000568566	RGPD8	O14715	1765 aa	Predicted RBP	12.26	□□□□□ -0.45
TSC2-223	ENST00000568566	KRT28	Q7Z3Y7	464 aa		12.26	□□□□□ -0.45
TSC2-223	ENST00000568566	ABCC11	Q96J66	1382 aa		12.26	□□□□□ -0.45
TSC2-223	ENST00000568566	PIK3C2G	O75747	1445 aa		12.26	□□□□□ -0.45
TSC2-223	ENST00000568566	SPATA31E1	Q6ZUB1	1445 aa		12.26	□□□□□ -0.45
TSC2-223	ENST00000568566	NWD2	Q9ULI1	1742 aa		12.25	□□□□□ -0.45
TSC2-223	ENST00000568566	VPS72	Q15906	364 aa		12.25	□□□□□ -0.45
TSC2-223	ENST00000568566	YTHDC2	Q9H6S0	1430 aa	Known RBP	12.25	□□□□□ -0.45
TSC2-223	ENST00000568566		A0A0G2JS52	829 aa		12.24	□□□□□ -0.45
TSC2-223	ENST00000568566	PSD	A5PKW4	1024 aa	Predicted RBP	12.24	□□□□□ -0.45
TSC2-223	ENST00000568566	MYT1	Q01538	1121 aa		12.24	□□□□□ -0.45
TSC2-223	ENST00000568566	LMOD2	Q6P5Q4	547 aa		12.24	□□□□□ -0.45
TSC2-223	ENST00000568566	KRT27	Q7Z3Y8	459 aa		12.24	□□□□□ -0.45
TSC2-223	ENST00000568566	PHF8	Q9UPP1	1060 aa		12.23	□□□□□ -0.45
TSC2-223	ENST00000568566	NRXN1	Q9ULB1	1477 aa		12.22	□□□□□ -0.45
TSC2-223	ENST00000568566	NEUROD1	Q13562	356 aa		12.22	□□□□□ -0.45
TSC2-223	ENST00000568566	SBNO1	A3KN83	1393 aa		12.21	□□□□□ -0.45
TSC2-223	ENST00000568566	ARHGEF10	O15013	1369 aa		12.21	□□□□□ -0.45
TSC2-223	ENST00000568566	NRAP	Q86VF7	1730 aa		12.21	□□□□□ -0.45
TSC2-223	ENST00000568566	PSME1	Q06323	249 aa		12.21	□□□□□ -0.45
TSC2-223	ENST00000568566	SAFB2	Q14151	953 aa	Known RBP eCLIP	12.21	□□□□□ -0.45
TSC2-223	ENST00000568566	ONECUT3	O60422	494 aa	Predicted RBP	12.2	□□□□□ -0.46
TSC2-223	ENST00000568566	BAG6	P46379	1132 aa		12.2	□□□□□ -0.46
TSC2-223	ENST00000568566	FAM98C	Q17RN3	349 aa	Known RBP	12.2	□□□□□ -0.46
TSC2-223	ENST00000568566	FAM83G	A6ND36	823 aa		12.19	□□□□□ -0.46
TSC2-223	ENST00000568566	RGPD1	P0DJD0	1748 aa		12.18	□□□□□ -0.46
TSC2-223	ENST00000568566	TRPM3	Q9HCF6	1732 aa	Predicted RBP	12.18	□□□□□ -0.46
TSC2-223	ENST00000568566	PMFBP1	Q8TBY8	1022 aa		12.18	□□□□□ -0.46
TSC2-223	ENST00000568566	PRAM1	Q96QH2	718 aa		12.18	□□□□□ -0.46
TSC2-223	ENST00000568566	KDM2A	Q9Y2K7	1162 aa		12.18	□□□□□ -0.46
TSC2-223	ENST00000568566	ACIN1	Q9UKV3	1341 aa	Known RBP	12.17	□□□□□ -0.46
TSC2-223	ENST00000568566	FAM182B	Q5T319	152 aa		12.17	□□□□□ -0.46
TSC2-223	ENST00000568566	BTG4	Q9NY30	223 aa		12.17	□□□□□ -0.46
TSC2-223	ENST00000568566	COL14A1	Q05707	1796 aa	Known RBP	12.16	□□□□□ -0.46
TSC2-223	ENST00000568566	EN1	Q05925	392 aa	Predicted RBP	12.16	□□□□□ -0.46
TSC2-223	ENST00000568566	CFAP70	Q5T0N1	1121 aa		12.16	□□□□□ -0.46
TSC2-223	ENST00000568566	SIRT1	Q96EB6	747 aa		12.16	□□□□□ -0.46
TSC2-223	ENST00000568566	C14orf93	Q9H972	538 aa	Known RBP	12.16	□□□□□ -0.46
TSC2-223	ENST00000568566	ANKAR	Q7Z5J8	1434 aa		12.16	□□□□□ -0.46
TSC2-223	ENST00000568566	ALS2	Q96Q42	1657 aa		12.16	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms