RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 LRRC59Q96AG4 307 aaKnown RBP13.98□□□□□ -0.17
SF3B3-211ENST00000568291 RGS12O14924 1447 aa13.98□□□□□ -0.17
SF3B3-211ENST00000568291 RPGRIP1LQ68CZ1 1315 aa13.97□□□□□ -0.17
SF3B3-211ENST00000568291 MARF1Q9Y4F3 1742 aaKnown RBP13.97□□□□□ -0.17
SF3B3-211ENST00000568291 UPF1Q92900 1129 aaKnown RBP eCLIP13.96□□□□□ -0.17
SF3B3-211ENST00000568291 C8orf37Q96NL8 207 aa13.96□□□□□ -0.17
SF3B3-211ENST00000568291 HRCP23327 699 aa13.95□□□□□ -0.18
SF3B3-211ENST00000568291 TMEM132EQ6IEE7 984 aa13.95□□□□□ -0.18
SF3B3-211ENST00000568291 STK26Q9P289 416 aa13.95□□□□□ -0.18
SF3B3-211ENST00000568291 KDM2AQ9Y2K7 1162 aa13.95□□□□□ -0.18
SF3B3-211ENST00000568291 SPATA31E1Q6ZUB1 1445 aa13.95□□□□□ -0.18
SF3B3-211ENST00000568291 ANKRD30BQ9BXX2 1392 aa13.95□□□□□ -0.18
SF3B3-211ENST00000568291 ACIN1Q9UKV3 1341 aaKnown RBP13.93□□□□□ -0.18
SF3B3-211ENST00000568291 FMN2Q9NZ56 1722 aa13.93□□□□□ -0.18
SF3B3-211ENST00000568291 ORAI2Q96SN7 254 aa13.93□□□□□ -0.18
SF3B3-211ENST00000568291 SOS2Q07890 1332 aaPredicted RBP13.92□□□□□ -0.18
SF3B3-211ENST00000568291 KIF1AQ12756 1690 aa13.91□□□□□ -0.18
SF3B3-211ENST00000568291 TECPR2O15040 1411 aa13.91□□□□□ -0.18
SF3B3-211ENST00000568291 ADAMTS2O95450 1211 aa13.91□□□□□ -0.18
SF3B3-211ENST00000568291 CFAP70Q5T0N1 1121 aa13.91□□□□□ -0.18
SF3B3-211ENST00000568291 MYOM2P54296 1465 aa13.91□□□□□ -0.18
SF3B3-211ENST00000568291 PXDNQ92626 1479 aa13.91□□□□□ -0.18
SF3B3-211ENST00000568291 RBM6P78332 1123 aaKnown RBP13.9□□□□□ -0.18
SF3B3-211ENST00000568291 DCAF11Q8TEB1 546 aa13.9□□□□□ -0.18
SF3B3-211ENST00000568291 NGLY1Q96IV0 654 aa13.89□□□□□ -0.19
SF3B3-211ENST00000568291 QTRT2Q9H974 415 aaKnown RBP13.89□□□□□ -0.19
SF3B3-211ENST00000568291 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.89□□□□□ -0.19
SF3B3-211ENST00000568291 LRPPRCP42704 1394 aaKnown RBP13.88□□□□□ -0.19
SF3B3-211ENST00000568291 WAPLQ7Z5K2 1190 aa13.88□□□□□ -0.19
SF3B3-211ENST00000568291 SIN3AQ96ST3 1273 aa13.88□□□□□ -0.19
SF3B3-211ENST00000568291 RGPD8O14715 1765 aaPredicted RBP13.88□□□□□ -0.19
SF3B3-211ENST00000568291 PIK3C2GO75747 1445 aa13.88□□□□□ -0.19
SF3B3-211ENST00000568291 NPHP3Q7Z494 1330 aa13.88□□□□□ -0.19
SF3B3-211ENST00000568291 TRIM26Q12899 539 aaPredicted RBP13.87□□□□□ -0.19
SF3B3-211ENST00000568291 ATRNO75882 1429 aa13.87□□□□□ -0.19
SF3B3-211ENST00000568291 ABCA3Q99758 1704 aa13.85□□□□□ -0.19
SF3B3-211ENST00000568291 NEUROD1Q13562 356 aa13.85□□□□□ -0.19
SF3B3-211ENST00000568291 ESCO1Q5FWF5 840 aa13.85□□□□□ -0.19
SF3B3-211ENST00000568291 C14orf93Q9H972 538 aaKnown RBP13.85□□□□□ -0.19
SF3B3-211ENST00000568291 USP21Q9UK80 565 aa13.85□□□□□ -0.19
SF3B3-211ENST00000568291 DHX57Q6P158 1386 aaKnown RBP13.84□□□□□ -0.19
SF3B3-211ENST00000568291 ATAD2Q6PL18 1390 aa13.84□□□□□ -0.19
SF3B3-211ENST00000568291 PLEKHH1Q9ULM0 1364 aa13.84□□□□□ -0.19
SF3B3-211ENST00000568291 YTHDC2Q9H6S0 1430 aaKnown RBP13.84□□□□□ -0.19
SF3B3-211ENST00000568291 USP32Q8NFA0 1604 aa13.84□□□□□ -0.19
SF3B3-211ENST00000568291 NUTM2FA1L443 756 aa13.84□□□□□ -0.19
SF3B3-211ENST00000568291 SAFB2Q14151 953 aaKnown RBP eCLIP13.84□□□□□ -0.19
SF3B3-211ENST00000568291 TRPC5Q9UL62 973 aaPredicted RBP13.84□□□□□ -0.19
SF3B3-211ENST00000568291 ABCC11Q96J66 1382 aa13.83□□□□□ -0.19
SF3B3-211ENST00000568291 XPCQ01831 940 aaPredicted RBP13.83□□□□□ -0.2
SF3B3-211ENST00000568291 PLCH1Q4KWH8 1693 aa13.82□□□□□ -0.2
SF3B3-211ENST00000568291 NRXN1Q9ULB1 1477 aa13.81□□□□□ -0.2
SF3B3-211ENST00000568291 FOXO3O43524 673 aa13.81□□□□□ -0.2
SF3B3-211ENST00000568291 FNBP4Q8N3X1 1017 aaPredicted RBP13.81□□□□□ -0.2
SF3B3-211ENST00000568291 BCL9LQ86UU0 1499 aa13.8□□□□□ -0.2
SF3B3-211ENST00000568291 TRAK1Q9UPV9 953 aa13.8□□□□□ -0.2
SF3B3-211ENST00000568291 BRWD3Q6RI45 1802 aa13.8□□□□□ -0.2
SF3B3-211ENST00000568291 GLI3P10071 1580 aa13.79□□□□□ -0.2
SF3B3-211ENST00000568291 PRAM1Q96QH2 718 aa13.79□□□□□ -0.2
SF3B3-211ENST00000568291 ADGRB2O60241 1585 aa13.79□□□□□ -0.2
SF3B3-211ENST00000568291 NWD2Q9ULI1 1742 aa13.78□□□□□ -0.2
SF3B3-211ENST00000568291 TNS3Q68CZ2 1445 aa13.78□□□□□ -0.2
SF3B3-211ENST00000568291 SLIT2O94813 1529 aa13.77□□□□□ -0.21
SF3B3-211ENST00000568291 NBPF1Q3BBV0 1214 aa13.77□□□□□ -0.21
SF3B3-211ENST00000568291 L3MBTL2Q969R5 705 aa13.77□□□□□ -0.21
SF3B3-211ENST00000568291 DLC1Q96QB1 1528 aa13.77□□□□□ -0.21
SF3B3-211ENST00000568291 RALGAPBQ86X10 1494 aa13.76□□□□□ -0.21
SF3B3-211ENST00000568291 SPATA31A3Q5VYP0 1347 aa13.76□□□□□ -0.21
SF3B3-211ENST00000568291 HIRIP3Q9BW71 556 aaPredicted RBP13.76□□□□□ -0.21
SF3B3-211ENST00000568291 POGKQ9P215 609 aa13.76□□□□□ -0.21
SF3B3-211ENST00000568291 TRPM3Q9HCF6 1732 aaPredicted RBP13.76□□□□□ -0.21
SF3B3-211ENST00000568291 MAPK8IP2Q13387 824 aaPredicted RBP13.75□□□□□ -0.21
SF3B3-211ENST00000568291 PCGF6Q9BYE7 350 aa13.75□□□□□ -0.21
SF3B3-211ENST00000568291 ADGRB1O14514 1584 aa13.74□□□□□ -0.21
SF3B3-211ENST00000568291 ANKARQ7Z5J8 1434 aa13.73□□□□□ -0.21
SF3B3-211ENST00000568291 NRAPQ86VF7 1730 aa13.73□□□□□ -0.21
SF3B3-211ENST00000568291 KRT28Q7Z3Y7 464 aa13.73□□□□□ -0.21
SF3B3-211ENST00000568291 GJD4Q96KN9 370 aaPredicted RBP13.73□□□□□ -0.21
SF3B3-211ENST00000568291 ALS2Q96Q42 1657 aa13.72□□□□□ -0.21
SF3B3-211ENST00000568291 MINK1Q8N4C8 1332 aaPredicted RBP13.72□□□□□ -0.21
SF3B3-211ENST00000568291 UNC5CLQ8IV45 518 aa13.72□□□□□ -0.21
SF3B3-211ENST00000568291 SIRT1Q96EB6 747 aa13.72□□□□□ -0.21
SF3B3-211ENST00000568291 PHF8Q9UPP1 1060 aa13.72□□□□□ -0.21
SF3B3-211ENST00000568291 ARHGEF28Q8N1W1 1705 aaKnown RBP13.72□□□□□ -0.21
SF3B3-211ENST00000568291 SBNO1A3KN83 1393 aa13.71□□□□□ -0.21
SF3B3-211ENST00000568291 EP400Q96L91 3159 aa13.71□□□□□ -0.21
SF3B3-211ENST00000568291 ITSN1Q15811 1721 aa13.71□□□□□ -0.21
SF3B3-211ENST00000568291 CRYBG1Q9Y4K1 1723 aa13.71□□□□□ -0.21
SF3B3-211ENST00000568291 HAP1P54257 671 aaPredicted RBP13.71□□□□□ -0.21
SF3B3-211ENST00000568291 ARHGEF10O15013 1369 aa13.71□□□□□ -0.22
SF3B3-211ENST00000568291 TULP4Q9NRJ4 1543 aa13.69□□□□□ -0.22
SF3B3-211ENST00000568291 PLEKHG5O94827 1062 aa13.69□□□□□ -0.22
SF3B3-211ENST00000568291 PSME1Q06323 249 aa13.69□□□□□ -0.22
SF3B3-211ENST00000568291 STAC3Q96MF2 364 aa13.69□□□□□ -0.22
SF3B3-211ENST00000568291 COL14A1Q05707 1796 aaKnown RBP13.68□□□□□ -0.22
SF3B3-211ENST00000568291 BLMP54132 1417 aaPredicted RBP13.68□□□□□ -0.22
SF3B3-211ENST00000568291 NBPF8Q3BBV2 869 aa13.68□□□□□ -0.22
SF3B3-211ENST00000568291 LMOD2Q6P5Q4 547 aa13.68□□□□□ -0.22
SF3B3-211ENST00000568291 CABLES1Q8TDN4 633 aa13.68□□□□□ -0.22
SF3B3-211ENST00000568291 EIF3AQ14152 1382 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms