RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 METP08581 1390 aa9.53□□□□□ -0.88
SMG1-215ENST00000568239 THEMISQ8N1K5 641 aaPredicted RBP9.52□□□□□ -0.88
SMG1-215ENST00000568239 PTPRMP28827 1452 aa9.52□□□□□ -0.89
SMG1-215ENST00000568239 TNNT2P45379 298 aaPredicted RBP9.51□□□□□ -0.89
SMG1-215ENST00000568239 CDK19Q9BWU1 502 aa9.51□□□□□ -0.89
SMG1-215ENST00000568239 LRPPRCP42704 1394 aaKnown RBP9.51□□□□□ -0.89
SMG1-215ENST00000568239 PLEKHH1Q9ULM0 1364 aa9.51□□□□□ -0.89
SMG1-215ENST00000568239 TULP4Q9NRJ4 1543 aa9.51□□□□□ -0.89
SMG1-215ENST00000568239 RIMS1Q86UR5 1692 aaKnown RBP9.51□□□□□ -0.89
SMG1-215ENST00000568239 NSD3Q9BZ95 1437 aa9.5□□□□□ -0.89
SMG1-215ENST00000568239 PPP2R1AP30153 589 aa9.5□□□□□ -0.89
SMG1-215ENST00000568239 SALL2Q9Y467 1007 aaPredicted RBP9.5□□□□□ -0.89
SMG1-215ENST00000568239 NRXN3Q9Y4C0 1643 aa9.5□□□□□ -0.89
SMG1-215ENST00000568239 ABCC11Q96J66 1382 aa9.49□□□□□ -0.89
SMG1-215ENST00000568239 MORC1Q86VD1 984 aa9.48□□□□□ -0.89
SMG1-215ENST00000568239 PUS7Q96PZ0 661 aaKnown RBP9.48□□□□□ -0.89
SMG1-215ENST00000568239 CABP1Q9NZU7 370 aa9.48□□□□□ -0.89
SMG1-215ENST00000568239 PLEKHG1Q9ULL1 1385 aa9.48□□□□□ -0.89
SMG1-215ENST00000568239 SETD1AO15047 1707 aaKnown RBP9.48□□□□□ -0.89
SMG1-215ENST00000568239 CGNL1Q0VF96 1302 aa9.48□□□□□ -0.89
SMG1-215ENST00000568239 ZBED9Q6R2W3 1325 aa9.48□□□□□ -0.89
SMG1-215ENST00000568239 ATAD2Q6PL18 1390 aa9.47□□□□□ -0.89
SMG1-215ENST00000568239 ADAMTS13Q76LX8 1427 aa9.47□□□□□ -0.89
SMG1-215ENST00000568239 WDR43Q15061 677 aaKnown RBP eCLIP9.47□□□□□ -0.89
SMG1-215ENST00000568239 TERF2IPQ9NYB0 399 aa9.47□□□□□ -0.89
SMG1-215ENST00000568239 ANKRD36BQ8N2N9 1353 aa9.47□□□□□ -0.89
SMG1-215ENST00000568239 NUTM2FA1L443 756 aa9.46□□□□□ -0.89
SMG1-215ENST00000568239 NPC1L1Q9UHC9 1359 aa9.46□□□□□ -0.89
SMG1-215ENST00000568239 HDGFL2Q7Z4V5 671 aaPredicted RBP9.46□□□□□ -0.9
SMG1-215ENST00000568239 AMOTL2Q9Y2J4 779 aa9.46□□□□□ -0.9
SMG1-215ENST00000568239 A0A1W2PP64 1363 aa9.46□□□□□ -0.9
SMG1-215ENST00000568239 DLC1Q96QB1 1528 aa9.46□□□□□ -0.9
SMG1-215ENST00000568239 WASLO00401 505 aaPredicted RBP9.45□□□□□ -0.9
SMG1-215ENST00000568239 ROBO2Q9HCK4 1378 aa9.45□□□□□ -0.9
SMG1-215ENST00000568239 NEFLP07196 543 aa9.45□□□□□ -0.9
SMG1-215ENST00000568239 GGNBP2Q9H3C7 697 aa9.45□□□□□ -0.9
SMG1-215ENST00000568239 SLIT1O75093 1534 aa9.45□□□□□ -0.9
SMG1-215ENST00000568239 CEP170BQ9Y4F5 1589 aaPredicted RBP9.44□□□□□ -0.9
SMG1-215ENST00000568239 ANKLE2Q86XL3 938 aa9.44□□□□□ -0.9
SMG1-215ENST00000568239 ADAMTS8Q9UP79 889 aa9.44□□□□□ -0.9
SMG1-215ENST00000568239 SUPT16HQ9Y5B9 1047 aaKnown RBP9.44□□□□□ -0.9
SMG1-215ENST00000568239 NINLQ9Y2I6 1382 aa9.44□□□□□ -0.9
SMG1-215ENST00000568239 SETD1BQ9UPS6 1966 aaKnown RBP9.44□□□□□ -0.9
SMG1-215ENST00000568239 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.44□□□□□ -0.9
SMG1-215ENST00000568239 TBX22Q9Y458 520 aa9.44□□□□□ -0.9
SMG1-215ENST00000568239 NCKAP5LQ9HCH0 1330 aa9.44□□□□□ -0.9
SMG1-215ENST00000568239 ARHGAP23Q9P227 1491 aa9.44□□□□□ -0.9
SMG1-215ENST00000568239 ADAMTSL3P82987 1691 aa9.43□□□□□ -0.9
SMG1-215ENST00000568239 FKBP8Q14318 412 aa9.43□□□□□ -0.9
SMG1-215ENST00000568239 NUDT16Q96DE0 195 aaKnown RBP9.43□□□□□ -0.9
SMG1-215ENST00000568239 FAM135BQ49AJ0 1406 aa9.43□□□□□ -0.9
SMG1-215ENST00000568239 SIRT1Q96EB6 747 aa9.42□□□□□ -0.9
SMG1-215ENST00000568239 TECPR2O15040 1411 aa9.42□□□□□ -0.9
SMG1-215ENST00000568239 CCDC61Q9Y6R9 512 aa9.42□□□□□ -0.9
SMG1-215ENST00000568239 PTPRUQ92729 1446 aa9.41□□□□□ -0.9
SMG1-215ENST00000568239 MTHFSP49914 203 aa9.41□□□□□ -0.9
SMG1-215ENST00000568239 PPIP5K1Q6PFW1 1433 aa9.41□□□□□ -0.9
SMG1-215ENST00000568239 FYB1O15117 783 aa9.41□□□□□ -0.9
SMG1-215ENST00000568239 CCDC146Q8IYE0 955 aa9.41□□□□□ -0.9
SMG1-215ENST00000568239 CPS1P31327 1500 aa9.41□□□□□ -0.9
SMG1-215ENST00000568239 KNDC1Q76NI1 1749 aa9.4□□□□□ -0.9
SMG1-215ENST00000568239 KCNA6P17658 529 aa9.4□□□□□ -0.9
SMG1-215ENST00000568239 MED14O60244 1454 aa9.4□□□□□ -0.9
SMG1-215ENST00000568239 IRX6P78412 446 aaPredicted RBP9.4□□□□□ -0.9
SMG1-215ENST00000568239 CD163L1Q9NR16 1453 aa9.39□□□□□ -0.91
SMG1-215ENST00000568239 RBM33Q96EV2 1170 aaKnown RBP9.39□□□□□ -0.91
SMG1-215ENST00000568239 NSD2O96028 1365 aa9.39□□□□□ -0.91
SMG1-215ENST00000568239 CFAP53Q96M91 514 aa9.39□□□□□ -0.91
SMG1-215ENST00000568239 DAXXQ9UER7 740 aaPredicted RBP9.39□□□□□ -0.91
SMG1-215ENST00000568239 PRR36Q9H6K5 1346 aa9.38□□□□□ -0.91
SMG1-215ENST00000568239 PPM1GO15355 546 aaPredicted RBP9.38□□□□□ -0.91
SMG1-215ENST00000568239 NUDCQ9Y266 331 aa9.38□□□□□ -0.91
SMG1-215ENST00000568239 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.38□□□□□ -0.91
SMG1-215ENST00000568239 USP32Q8NFA0 1604 aa9.38□□□□□ -0.91
SMG1-215ENST00000568239 PMFBP1Q8TBY8 1022 aa9.37□□□□□ -0.91
SMG1-215ENST00000568239 FBLN1P23142 703 aa9.37□□□□□ -0.91
SMG1-215ENST00000568239 BLMP54132 1417 aaPredicted RBP9.37□□□□□ -0.91
SMG1-215ENST00000568239 POLR3AO14802 1390 aaPredicted RBP9.37□□□□□ -0.91
SMG1-215ENST00000568239 ATP7BP35670 1465 aa9.37□□□□□ -0.91
SMG1-215ENST00000568239 C14orf37Q86TY3 774 aa9.36□□□□□ -0.91
SMG1-215ENST00000568239 NME9Q86XW9 330 aa9.36□□□□□ -0.91
SMG1-215ENST00000568239 DIP2AQ14689 1571 aa9.36□□□□□ -0.91
SMG1-215ENST00000568239 APAF1O14727 1248 aa9.36□□□□□ -0.91
SMG1-215ENST00000568239 CDCA7LQ96GN5 454 aa9.36□□□□□ -0.91
SMG1-215ENST00000568239 ZNF142P52746 1687 aaPredicted RBP9.36□□□□□ -0.91
SMG1-215ENST00000568239 U2SURPO15042 1029 aaKnown RBP9.36□□□□□ -0.91
SMG1-215ENST00000568239 ZRANB1Q9UGI0 708 aa9.36□□□□□ -0.91
SMG1-215ENST00000568239 ACEP12821 1306 aa9.35□□□□□ -0.91
SMG1-215ENST00000568239 U2AF1L5P0DN76 240 aaPredicted RBP9.35□□□□□ -0.91
SMG1-215ENST00000568239 U2AF1Q01081 240 aaKnown RBP eCLIP9.35□□□□□ -0.91
SMG1-215ENST00000568239 NEUROD2Q15784 382 aa9.35□□□□□ -0.91
SMG1-215ENST00000568239 NGDNQ8NEJ9 315 aaKnown RBP9.35□□□□□ -0.91
SMG1-215ENST00000568239 ZNF692Q9BU19 519 aaPredicted RBP9.35□□□□□ -0.91
SMG1-215ENST00000568239 PTCH1Q13635 1447 aa9.35□□□□□ -0.91
SMG1-215ENST00000568239 SMG6Q86US8 1419 aaKnown RBP9.35□□□□□ -0.91
SMG1-215ENST00000568239 COG3Q96JB2 828 aa9.34□□□□□ -0.91
SMG1-215ENST00000568239 NPHP4O75161 1426 aaPredicted RBP9.34□□□□□ -0.91
SMG1-215ENST00000568239 CPSF1Q10570 1443 aaKnown RBP9.34□□□□□ -0.91
SMG1-215ENST00000568239 PIK3R4Q99570 1358 aa9.34□□□□□ -0.91
SMG1-215ENST00000568239 EDC4Q6P2E9 1401 aaKnown RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms