RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SLAIN2Q9P270 581 aa14.19□□□□□ -0.14
CLK3-220ENST00000567992 FMN2Q9NZ56 1722 aa14.18□□□□□ -0.14
CLK3-220ENST00000567992 WAPLQ7Z5K2 1190 aa14.18□□□□□ -0.14
CLK3-220ENST00000567992 NHSL1Q5SYE7 1610 aa14.18□□□□□ -0.14
CLK3-220ENST00000567992 AHDC1Q5TGY3 1603 aaPredicted RBP14.17□□□□□ -0.14
CLK3-220ENST00000567992 ATF3P18847 181 aa14.17□□□□□ -0.14
CLK3-220ENST00000567992 COL16A1Q07092 1604 aaPredicted RBP14.16□□□□□ -0.14
CLK3-220ENST00000567992 PHLPP1O60346 1717 aa14.16□□□□□ -0.14
CLK3-220ENST00000567992 C1orf167Q5SNV9 1468 aa14.16□□□□□ -0.14
CLK3-220ENST00000567992 NBPF1Q3BBV0 1214 aa14.15□□□□□ -0.14
CLK3-220ENST00000567992 TONSLQ96HA7 1378 aa14.14□□□□□ -0.15
CLK3-220ENST00000567992 PRAM1Q96QH2 718 aa14.14□□□□□ -0.15
CLK3-220ENST00000567992 USP32Q8NFA0 1604 aa14.14□□□□□ -0.15
CLK3-220ENST00000567992 NBPF8Q3BBV2 869 aa14.13□□□□□ -0.15
CLK3-220ENST00000567992 BRINP3Q76B58 766 aa14.13□□□□□ -0.15
CLK3-220ENST00000567992 TRAK1Q9UPV9 953 aa14.13□□□□□ -0.15
CLK3-220ENST00000567992 CLSPNQ9HAW4 1339 aa14.13□□□□□ -0.15
CLK3-220ENST00000567992 RGPD8O14715 1765 aaPredicted RBP14.12□□□□□ -0.15
CLK3-220ENST00000567992 RALGAPBQ86X10 1494 aa14.12□□□□□ -0.15
CLK3-220ENST00000567992 GPRASP1Q5JY77 1395 aa14.11□□□□□ -0.15
CLK3-220ENST00000567992 QRICH2Q9H0J4 1663 aa14.1□□□□□ -0.15
CLK3-220ENST00000567992 SAFB2Q14151 953 aaKnown RBP eCLIP14.1□□□□□ -0.15
CLK3-220ENST00000567992 KIF1AQ12756 1690 aa14.08□□□□□ -0.16
CLK3-220ENST00000567992 POGKQ9P215 609 aa14.08□□□□□ -0.16
CLK3-220ENST00000567992 ROCK2O75116 1388 aaKnown RBP14.08□□□□□ -0.16
CLK3-220ENST00000567992 SHPRHQ149N8 1683 aa14.07□□□□□ -0.16
CLK3-220ENST00000567992 TULP4Q9NRJ4 1543 aa14.07□□□□□ -0.16
CLK3-220ENST00000567992 ORAI2Q96SN7 254 aa14.07□□□□□ -0.16
CLK3-220ENST00000567992 MED1Q15648 1581 aaPredicted RBP14.07□□□□□ -0.16
CLK3-220ENST00000567992 TOPAZ1Q8N9V7 1692 aa14.06□□□□□ -0.16
CLK3-220ENST00000567992 MINK1Q8N4C8 1332 aaPredicted RBP14.06□□□□□ -0.16
CLK3-220ENST00000567992 ANKARQ7Z5J8 1434 aa14.06□□□□□ -0.16
CLK3-220ENST00000567992 PXDNQ92626 1479 aa14.06□□□□□ -0.16
CLK3-220ENST00000567992 DDX17Q92841 729 aaKnown RBP14.05□□□□□ -0.16
CLK3-220ENST00000567992 HIRIP3Q9BW71 556 aaPredicted RBP14.05□□□□□ -0.16
CLK3-220ENST00000567992 ATP7BP35670 1465 aa14.05□□□□□ -0.16
CLK3-220ENST00000567992 ITSN1Q15811 1721 aa14.04□□□□□ -0.16
CLK3-220ENST00000567992 NUTM2FA1L443 756 aa14.04□□□□□ -0.16
CLK3-220ENST00000567992 PRR36Q9H6K5 1346 aa14.04□□□□□ -0.16
CLK3-220ENST00000567992 CCER1Q8TC90 406 aaPredicted RBP14.03□□□□□ -0.16
CLK3-220ENST00000567992 CENPJQ9HC77 1338 aaPredicted RBP14.03□□□□□ -0.16
CLK3-220ENST00000567992 JCADQ9P266 1359 aa14.02□□□□□ -0.17
CLK3-220ENST00000567992 SOS2Q07890 1332 aaPredicted RBP14.02□□□□□ -0.17
CLK3-220ENST00000567992 WASLO00401 505 aaPredicted RBP14.02□□□□□ -0.17
CLK3-220ENST00000567992 EIF3AQ14152 1382 aaKnown RBP14.01□□□□□ -0.17
CLK3-220ENST00000567992 ESCO1Q5FWF5 840 aa14.01□□□□□ -0.17
CLK3-220ENST00000567992 TIMELESSQ9UNS1 1208 aa14.01□□□□□ -0.17
CLK3-220ENST00000567992 COL22A1Q8NFW1 1626 aaPredicted RBP14.01□□□□□ -0.17
CLK3-220ENST00000567992 TRPM3Q9HCF6 1732 aaPredicted RBP14□□□□□ -0.17
CLK3-220ENST00000567992 LRP6O75581 1613 aa14□□□□□ -0.17
CLK3-220ENST00000567992 PNPLA6Q8IY17 1366 aa13.98□□□□□ -0.17
CLK3-220ENST00000567992 SBNO2Q9Y2G9 1366 aa13.98□□□□□ -0.17
CLK3-220ENST00000567992 NPHP3Q7Z494 1330 aa13.98□□□□□ -0.17
CLK3-220ENST00000567992 CARD11Q9BXL7 1154 aa13.98□□□□□ -0.17
CLK3-220ENST00000567992 FOXO3O43524 673 aa13.97□□□□□ -0.17
CLK3-220ENST00000567992 CDK19Q9BWU1 502 aa13.97□□□□□ -0.17
CLK3-220ENST00000567992 PHF8Q9UPP1 1060 aa13.97□□□□□ -0.17
CLK3-220ENST00000567992 ALS2Q96Q42 1657 aa13.95□□□□□ -0.18
CLK3-220ENST00000567992 XPCQ01831 940 aaPredicted RBP13.95□□□□□ -0.18
CLK3-220ENST00000567992 LRRC59Q96AG4 307 aaKnown RBP13.95□□□□□ -0.18
CLK3-220ENST00000567992 NUDT16Q96DE0 195 aaKnown RBP13.95□□□□□ -0.18
CLK3-220ENST00000567992 SPATA31A6Q5VVP1 1343 aa13.94□□□□□ -0.18
CLK3-220ENST00000567992 ABCA3Q99758 1704 aa13.94□□□□□ -0.18
CLK3-220ENST00000567992 TNS3Q68CZ2 1445 aa13.93□□□□□ -0.18
CLK3-220ENST00000567992 PMFBP1Q8TBY8 1022 aa13.93□□□□□ -0.18
CLK3-220ENST00000567992 POLR3AO14802 1390 aaPredicted RBP13.93□□□□□ -0.18
CLK3-220ENST00000567992 DISP3Q9P2K9 1392 aa13.93□□□□□ -0.18
CLK3-220ENST00000567992 CRYBG1Q9Y4K1 1723 aa13.93□□□□□ -0.18
CLK3-220ENST00000567992 PPIP5K1Q6PFW1 1433 aa13.92□□□□□ -0.18
CLK3-220ENST00000567992 CABP2Q9NPB3 220 aa13.92□□□□□ -0.18
CLK3-220ENST00000567992 SBNO1A3KN83 1393 aa13.92□□□□□ -0.18
CLK3-220ENST00000567992 USP47Q96K76 1375 aa13.92□□□□□ -0.18
CLK3-220ENST00000567992 SPATA31A3Q5VYP0 1347 aa13.91□□□□□ -0.18
CLK3-220ENST00000567992 MARF1Q9Y4F3 1742 aaKnown RBP13.91□□□□□ -0.18
CLK3-220ENST00000567992 KRT28Q7Z3Y7 464 aa13.91□□□□□ -0.18
CLK3-220ENST00000567992 TESK2Q96S53 571 aa13.91□□□□□ -0.18
CLK3-220ENST00000567992 AKAP12Q02952 1782 aa13.91□□□□□ -0.18
CLK3-220ENST00000567992 EVC2Q86UK5 1308 aa13.9□□□□□ -0.18
CLK3-220ENST00000567992 PLEKHG3A1L390 1219 aa13.9□□□□□ -0.18
CLK3-220ENST00000567992 SRPK2P78362 688 aaKnown RBP13.9□□□□□ -0.18
CLK3-220ENST00000567992 CCDC61Q9Y6R9 512 aa13.9□□□□□ -0.18
CLK3-220ENST00000567992 NRKQ7Z2Y5 1582 aa13.89□□□□□ -0.19
CLK3-220ENST00000567992 ST20-MTHFSA0A0A6YYL1 179 aa13.89□□□□□ -0.19
CLK3-220ENST00000567992 RGS17Q9UGC6 210 aaPredicted RBP13.88□□□□□ -0.19
CLK3-220ENST00000567992 ACEP12821 1306 aa13.88□□□□□ -0.19
CLK3-220ENST00000567992 MON2Q7Z3U7 1717 aa13.87□□□□□ -0.19
CLK3-220ENST00000567992 PSME1Q06323 249 aa13.87□□□□□ -0.19
CLK3-220ENST00000567992 ATAD2Q6PL18 1390 aa13.86□□□□□ -0.19
CLK3-220ENST00000567992 NGDNQ8NEJ9 315 aaKnown RBP13.86□□□□□ -0.19
CLK3-220ENST00000567992 CD163L1Q9NR16 1453 aa13.86□□□□□ -0.19
CLK3-220ENST00000567992 PHRF1Q9P1Y6 1649 aaKnown RBP13.86□□□□□ -0.19
CLK3-220ENST00000567992 ARHGEF10O15013 1369 aa13.85□□□□□ -0.19
CLK3-220ENST00000567992 SSH2Q76I76 1423 aa13.85□□□□□ -0.19
CLK3-220ENST00000567992 NUTM2BA6NNL0 878 aaPredicted RBP13.85□□□□□ -0.19
CLK3-220ENST00000567992 NUTM2EB1AL46 878 aaPredicted RBP13.85□□□□□ -0.19
CLK3-220ENST00000567992 NUTM2AQ8IVF1 878 aaPredicted RBP13.85□□□□□ -0.19
CLK3-220ENST00000567992 USP6P35125 1406 aa13.84□□□□□ -0.19
CLK3-220ENST00000567992 CPSF1Q10570 1443 aaKnown RBP13.84□□□□□ -0.19
CLK3-220ENST00000567992 CABP1Q9NZU7 370 aa13.84□□□□□ -0.19
CLK3-220ENST00000567992 PIK3C2AO00443 1686 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms