RNA–Protein interactions for RNA: ENST00000567674.1

CDH3-206, Transcript of cadherin 3, humanhuman

TSL 3

Gene CDH3, Length 892 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-206ENST00000567674 LAMC1P11047 1609 aa16.38■□□□□ 0.21
CDH3-206ENST00000567674 C1orf167Q5SNV9 1468 aa16.36■□□□□ 0.21
CDH3-206ENST00000567674 ASXL1Q8IXJ9 1541 aa16.36■□□□□ 0.21
CDH3-206ENST00000567674 KNDC1Q76NI1 1749 aa16.35■□□□□ 0.21
CDH3-206ENST00000567674 YTHDC2Q9H6S0 1430 aaKnown RBP16.35■□□□□ 0.21
CDH3-206ENST00000567674 NALCNQ8IZF0 1738 aa16.34■□□□□ 0.21
CDH3-206ENST00000567674 ZRANB1Q9UGI0 708 aa16.34■□□□□ 0.21
CDH3-206ENST00000567674 RGS12O14924 1447 aa16.34■□□□□ 0.21
CDH3-206ENST00000567674 CDC42BPGQ6DT37 1551 aa16.34■□□□□ 0.21
CDH3-206ENST00000567674 AFF2P51816 1311 aa16.33■□□□□ 0.2
CDH3-206ENST00000567674 NHSL1Q5SYE7 1610 aa16.33■□□□□ 0.2
CDH3-206ENST00000567674 DLC1Q96QB1 1528 aa16.32■□□□□ 0.2
CDH3-206ENST00000567674 SOS2Q07890 1332 aaPredicted RBP16.31■□□□□ 0.2
CDH3-206ENST00000567674 RBM6P78332 1123 aaKnown RBP16.31■□□□□ 0.2
CDH3-206ENST00000567674 NPHP3Q7Z494 1330 aa16.3■□□□□ 0.2
CDH3-206ENST00000567674 NUTM2BA6NNL0 878 aaPredicted RBP16.3■□□□□ 0.2
CDH3-206ENST00000567674 NUTM2EB1AL46 878 aaPredicted RBP16.3■□□□□ 0.2
CDH3-206ENST00000567674 NUTM2AQ8IVF1 878 aaPredicted RBP16.3■□□□□ 0.2
CDH3-206ENST00000567674 ATAD2Q6PL18 1390 aa16.29■□□□□ 0.2
CDH3-206ENST00000567674 CFAP70Q5T0N1 1121 aa16.29■□□□□ 0.2
CDH3-206ENST00000567674 TMEM132EQ6IEE7 984 aa16.29■□□□□ 0.2
CDH3-206ENST00000567674 DCAF11Q8TEB1 546 aa16.29■□□□□ 0.2
CDH3-206ENST00000567674 QTRT2Q9H974 415 aaKnown RBP16.28■□□□□ 0.2
CDH3-206ENST00000567674 STK26Q9P289 416 aa16.28■□□□□ 0.2
CDH3-206ENST00000567674 WAPLQ7Z5K2 1190 aa16.26■□□□□ 0.19
CDH3-206ENST00000567674 NGLY1Q96IV0 654 aa16.26■□□□□ 0.19
CDH3-206ENST00000567674 EIF3AQ14152 1382 aaKnown RBP16.26■□□□□ 0.19
CDH3-206ENST00000567674 ORAI2Q96SN7 254 aa16.25■□□□□ 0.19
CDH3-206ENST00000567674 ADGRB1O14514 1584 aa16.25■□□□□ 0.19
CDH3-206ENST00000567674 ESCO1Q5FWF5 840 aa16.24■□□□□ 0.19
CDH3-206ENST00000567674 PNPLA6Q8IY17 1366 aa16.23■□□□□ 0.19
CDH3-206ENST00000567674 ANKARQ7Z5J8 1434 aa16.22■□□□□ 0.19
CDH3-206ENST00000567674 C8orf37Q96NL8 207 aa16.22■□□□□ 0.19
CDH3-206ENST00000567674 PRAM1Q96QH2 718 aa16.22■□□□□ 0.19
CDH3-206ENST00000567674 POGKQ9P215 609 aa16.22■□□□□ 0.19
CDH3-206ENST00000567674 KIAA1210Q9ULL0 1709 aa16.2■□□□□ 0.18
CDH3-206ENST00000567674 PSME1Q06323 249 aa16.2■□□□□ 0.18
CDH3-206ENST00000567674 CCDC125Q86Z20 511 aa16.2■□□□□ 0.18
CDH3-206ENST00000567674 KDM2AQ9Y2K7 1162 aa16.2■□□□□ 0.18
CDH3-206ENST00000567674 PLEKHH1Q9ULM0 1364 aa16.2■□□□□ 0.18
CDH3-206ENST00000567674 ADGRB2O60241 1585 aa16.2■□□□□ 0.18
CDH3-206ENST00000567674 KIF1AQ12756 1690 aa16.2■□□□□ 0.18
CDH3-206ENST00000567674 FMN2Q9NZ56 1722 aa16.19■□□□□ 0.18
CDH3-206ENST00000567674 COL22A1Q8NFW1 1626 aaPredicted RBP16.18■□□□□ 0.18
CDH3-206ENST00000567674 PXDNQ92626 1479 aa16.17■□□□□ 0.18
CDH3-206ENST00000567674 FOXO3O43524 673 aa16.17■□□□□ 0.18
CDH3-206ENST00000567674 PHF8Q9UPP1 1060 aa16.17■□□□□ 0.18
CDH3-206ENST00000567674 TRAK1Q9UPV9 953 aa16.17■□□□□ 0.18
CDH3-206ENST00000567674 SBNO1A3KN83 1393 aa16.16■□□□□ 0.18
CDH3-206ENST00000567674 WASLO00401 505 aaPredicted RBP16.15■□□□□ 0.18
CDH3-206ENST00000567674 FNBP4Q8N3X1 1017 aaPredicted RBP16.15■□□□□ 0.18
CDH3-206ENST00000567674 DDX17Q92841 729 aaKnown RBP16.15■□□□□ 0.18
CDH3-206ENST00000567674 SPATA31A3Q5VYP0 1347 aa16.15■□□□□ 0.18
CDH3-206ENST00000567674 TRIM26Q12899 539 aaPredicted RBP16.13■□□□□ 0.17
CDH3-206ENST00000567674 KRT28Q7Z3Y7 464 aa16.13■□□□□ 0.17
CDH3-206ENST00000567674 TRPC5Q9UL62 973 aaPredicted RBP16.13■□□□□ 0.17
CDH3-206ENST00000567674 ARHGEF10O15013 1369 aa16.12■□□□□ 0.17
CDH3-206ENST00000567674 EP400Q96L91 3159 aa16.12■□□□□ 0.17
CDH3-206ENST00000567674 TULP4Q9NRJ4 1543 aa16.11■□□□□ 0.17
CDH3-206ENST00000567674 USP21Q9UK80 565 aa16.11■□□□□ 0.17
CDH3-206ENST00000567674 LRP5O75197 1615 aa16.09■□□□□ 0.17
CDH3-206ENST00000567674 ADAMTS2O95450 1211 aa16.09■□□□□ 0.17
CDH3-206ENST00000567674 L3MBTL2Q969R5 705 aa16.09■□□□□ 0.17
CDH3-206ENST00000567674 GPRASP1Q5JY77 1395 aa16.09■□□□□ 0.17
CDH3-206ENST00000567674 NUTM2FA1L443 756 aa16.08■□□□□ 0.16
CDH3-206ENST00000567674 TNS3Q68CZ2 1445 aa16.08■□□□□ 0.16
CDH3-206ENST00000567674 SAFB2Q14151 953 aaKnown RBP eCLIP16.07■□□□□ 0.16
CDH3-206ENST00000567674 CCDC61Q9Y6R9 512 aa16.07■□□□□ 0.16
CDH3-206ENST00000567674 BRD4O60885 1362 aaPredicted RBP16.07■□□□□ 0.16
CDH3-206ENST00000567674 ARHGEF28Q8N1W1 1705 aaKnown RBP16.06■□□□□ 0.16
CDH3-206ENST00000567674 ATRNO75882 1429 aa16.06■□□□□ 0.16
CDH3-206ENST00000567674 MINK1Q8N4C8 1332 aaPredicted RBP16.06■□□□□ 0.16
CDH3-206ENST00000567674 PLEKHG3A1L390 1219 aa16.05■□□□□ 0.16
CDH3-206ENST00000567674 CENPJQ9HC77 1338 aaPredicted RBP16.04■□□□□ 0.16
CDH3-206ENST00000567674 SLC24A1O60721 1099 aa16.04■□□□□ 0.16
CDH3-206ENST00000567674 NBPF1Q3BBV0 1214 aa16.04■□□□□ 0.16
CDH3-206ENST00000567674 NUDT16Q96DE0 195 aaKnown RBP16.04■□□□□ 0.16
CDH3-206ENST00000567674 USP32Q8NFA0 1604 aa16.04■□□□□ 0.16
CDH3-206ENST00000567674 BLMP54132 1417 aaPredicted RBP16.03■□□□□ 0.16
CDH3-206ENST00000567674 HIRIP3Q9BW71 556 aaPredicted RBP16.03■□□□□ 0.16
CDH3-206ENST00000567674 CDK19Q9BWU1 502 aa16.03■□□□□ 0.16
CDH3-206ENST00000567674 POLR3AO14802 1390 aaPredicted RBP16.02■□□□□ 0.16
CDH3-206ENST00000567674 PRR36Q9H6K5 1346 aa16.02■□□□□ 0.16
CDH3-206ENST00000567674 NGDNQ8NEJ9 315 aaKnown RBP16.02■□□□□ 0.16
CDH3-206ENST00000567674 ITSN1Q15811 1721 aa16.02■□□□□ 0.15
CDH3-206ENST00000567674 RGPD8O14715 1765 aaPredicted RBP16.01■□□□□ 0.15
CDH3-206ENST00000567674 XPCQ01831 940 aaPredicted RBP16.01■□□□□ 0.15
CDH3-206ENST00000567674 PMFBP1Q8TBY8 1022 aa16.01■□□□□ 0.15
CDH3-206ENST00000567674 SIN3AQ96ST3 1273 aa16.01■□□□□ 0.15
CDH3-206ENST00000567674 ATP7BP35670 1465 aa16.01■□□□□ 0.15
CDH3-206ENST00000567674 SLIT2O94813 1529 aa16■□□□□ 0.15
CDH3-206ENST00000567674 MARF1Q9Y4F3 1742 aaKnown RBP16■□□□□ 0.15
CDH3-206ENST00000567674 BCL9LQ86UU0 1499 aa16■□□□□ 0.15
CDH3-206ENST00000567674 UNC5CLQ8IV45 518 aa16■□□□□ 0.15
CDH3-206ENST00000567674 TIMELESSQ9UNS1 1208 aa15.99■□□□□ 0.15
CDH3-206ENST00000567674 SBNO2Q9Y2G9 1366 aa15.99■□□□□ 0.15
CDH3-206ENST00000567674 HAP1P54257 671 aaPredicted RBP15.98■□□□□ 0.15
CDH3-206ENST00000567674 NEUROD1Q13562 356 aa15.98■□□□□ 0.15
CDH3-206ENST00000567674 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.98■□□□□ 0.15
CDH3-206ENST00000567674 ROCK2O75116 1388 aaKnown RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms