RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 DHX57Q6P158 1386 aaKnown RBP27.38■■□□□ 1.97
SMPD3-209ENST00000567223 TMEM132EQ6IEE7 984 aa27.38■■□□□ 1.97
SMPD3-209ENST00000567223 SOS2Q07890 1332 aaPredicted RBP27.38■■□□□ 1.97
SMPD3-209ENST00000567223 DLC1Q96QB1 1528 aa27.37■■□□□ 1.97
SMPD3-209ENST00000567223 ADGRB1O14514 1584 aa27.36■■□□□ 1.97
SMPD3-209ENST00000567223 CFAP70Q5T0N1 1121 aa27.35■■□□□ 1.97
SMPD3-209ENST00000567223 STK26Q9P289 416 aa27.35■■□□□ 1.97
SMPD3-209ENST00000567223 WAPLQ7Z5K2 1190 aa27.34■■□□□ 1.97
SMPD3-209ENST00000567223 ORAI2Q96SN7 254 aa27.34■■□□□ 1.97
SMPD3-209ENST00000567223 PNPLA6Q8IY17 1366 aa27.34■■□□□ 1.97
SMPD3-209ENST00000567223 PLEKHH1Q9ULM0 1364 aa27.34■■□□□ 1.97
SMPD3-209ENST00000567223 POTEAQ6S8J7 498 aa27.33■■□□□ 1.97
SMPD3-209ENST00000567223 FMN2Q9NZ56 1722 aa27.32■■□□□ 1.96
SMPD3-209ENST00000567223 DDX17Q92841 729 aaKnown RBP27.29■■□□□ 1.96
SMPD3-209ENST00000567223 NPHP3Q7Z494 1330 aa27.29■■□□□ 1.96
SMPD3-209ENST00000567223 COL22A1Q8NFW1 1626 aaPredicted RBP27.28■■□□□ 1.96
SMPD3-209ENST00000567223 ZNF772Q68DY9 489 aaPredicted RBP27.28■■□□□ 1.96
SMPD3-209ENST00000567223 ADGRB2O60241 1585 aa27.27■■□□□ 1.96
SMPD3-209ENST00000567223 PXDNQ92626 1479 aa27.27■■□□□ 1.96
SMPD3-209ENST00000567223 KIF1AQ12756 1690 aa27.27■■□□□ 1.96
SMPD3-209ENST00000567223 MEX3CQ5U5Q3 659 aaKnown RBP27.26■■□□□ 1.95
SMPD3-209ENST00000567223 DCAF11Q8TEB1 546 aa27.26■■□□□ 1.95
SMPD3-209ENST00000567223 ESCO1Q5FWF5 840 aa27.25■■□□□ 1.95
SMPD3-209ENST00000567223 PRAM1Q96QH2 718 aa27.21■■□□□ 1.95
SMPD3-209ENST00000567223 ANKARQ7Z5J8 1434 aa27.19■■□□□ 1.94
SMPD3-209ENST00000567223 KIAA1210Q9ULL0 1709 aa27.19■■□□□ 1.94
SMPD3-209ENST00000567223 NUTM2BA6NNL0 878 aaPredicted RBP27.18■■□□□ 1.94
SMPD3-209ENST00000567223 NUTM2EB1AL46 878 aaPredicted RBP27.18■■□□□ 1.94
SMPD3-209ENST00000567223 NUTM2AQ8IVF1 878 aaPredicted RBP27.18■■□□□ 1.94
SMPD3-209ENST00000567223 CDK12Q9NYV4 1490 aaPredicted RBP27.17■■□□□ 1.94
SMPD3-209ENST00000567223 FOXO3O43524 673 aa27.16■■□□□ 1.94
SMPD3-209ENST00000567223 KDM2AQ9Y2K7 1162 aa27.16■■□□□ 1.94
SMPD3-209ENST00000567223 POGKQ9P215 609 aa27.14■■□□□ 1.94
SMPD3-209ENST00000567223 AFF2P51816 1311 aa27.14■■□□□ 1.93
SMPD3-209ENST00000567223 EIF3AQ14152 1382 aaKnown RBP27.13■■□□□ 1.93
SMPD3-209ENST00000567223 USP32Q8NFA0 1604 aa27.12■■□□□ 1.93
SMPD3-209ENST00000567223 ARHGEF28Q8N1W1 1705 aaKnown RBP27.11■■□□□ 1.93
SMPD3-209ENST00000567223 TRAK1Q9UPV9 953 aa27.11■■□□□ 1.93
SMPD3-209ENST00000567223 NUTM2FA1L443 756 aa27.1■■□□□ 1.93
SMPD3-209ENST00000567223 RGPD8O14715 1765 aaPredicted RBP27.09■■□□□ 1.93
SMPD3-209ENST00000567223 PHF8Q9UPP1 1060 aa27.09■■□□□ 1.93
SMPD3-209ENST00000567223 TULP4Q9NRJ4 1543 aa27.09■■□□□ 1.93
SMPD3-209ENST00000567223 SPATA31A3Q5VYP0 1347 aa27.09■■□□□ 1.93
SMPD3-209ENST00000567223 C8orf37Q96NL8 207 aa27.08■■□□□ 1.93
SMPD3-209ENST00000567223 RXRBP28702 533 aa27.07■■□□□ 1.92
SMPD3-209ENST00000567223 SBNO1A3KN83 1393 aa27.07■■□□□ 1.92
SMPD3-209ENST00000567223 SAFB2Q14151 953 aaKnown RBP eCLIP27.06■■□□□ 1.92
SMPD3-209ENST00000567223 FNBP4Q8N3X1 1017 aaPredicted RBP27.06■■□□□ 1.92
SMPD3-209ENST00000567223 MARF1Q9Y4F3 1742 aaKnown RBP27.06■■□□□ 1.92
SMPD3-209ENST00000567223 TNS3Q68CZ2 1445 aa27.04■■□□□ 1.92
SMPD3-209ENST00000567223 WASLO00401 505 aaPredicted RBP27.03■■□□□ 1.92
SMPD3-209ENST00000567223 ADAMTS2O95450 1211 aa27.03■■□□□ 1.92
SMPD3-209ENST00000567223 XPCQ01831 940 aaPredicted RBP27.03■■□□□ 1.92
SMPD3-209ENST00000567223 PSME1Q06323 249 aa27.03■■□□□ 1.92
SMPD3-209ENST00000567223 KRT28Q7Z3Y7 464 aa27.03■■□□□ 1.92
SMPD3-209ENST00000567223 NGLY1Q96IV0 654 aa27.02■■□□□ 1.92
SMPD3-209ENST00000567223 RBM6P78332 1123 aaKnown RBP27■■□□□ 1.91
SMPD3-209ENST00000567223 ARHGEF10O15013 1369 aa26.99■■□□□ 1.91
SMPD3-209ENST00000567223 MINK1Q8N4C8 1332 aaPredicted RBP26.99■■□□□ 1.91
SMPD3-209ENST00000567223 QTRT2Q9H974 415 aaKnown RBP26.99■■□□□ 1.91
SMPD3-209ENST00000567223 PRR36Q9H6K5 1346 aa26.98■■□□□ 1.91
SMPD3-209ENST00000567223 HIRIP3Q9BW71 556 aaPredicted RBP26.97■■□□□ 1.91
SMPD3-209ENST00000567223 USP21Q9UK80 565 aa26.97■■□□□ 1.91
SMPD3-209ENST00000567223 ATP7BP35670 1465 aa26.97■■□□□ 1.91
SMPD3-209ENST00000567223 ITSN1Q15811 1721 aa26.96■■□□□ 1.91
SMPD3-209ENST00000567223 TRPM3Q9HCF6 1732 aaPredicted RBP26.96■■□□□ 1.91
SMPD3-209ENST00000567223 BCL9LQ86UU0 1499 aa26.96■■□□□ 1.91
SMPD3-209ENST00000567223 TRPC5Q9UL62 973 aaPredicted RBP26.96■■□□□ 1.91
SMPD3-209ENST00000567223 ATRNO75882 1429 aa26.96■■□□□ 1.91
SMPD3-209ENST00000567223 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.96■■□□□ 1.91
SMPD3-209ENST00000567223 RGS12O14924 1447 aa26.94■■□□□ 1.9
SMPD3-209ENST00000567223 L3MBTL2Q969R5 705 aa26.93■■□□□ 1.9
SMPD3-209ENST00000567223 SLIT2O94813 1529 aa26.93■■□□□ 1.9
SMPD3-209ENST00000567223 ALS2Q96Q42 1657 aa26.92■■□□□ 1.9
SMPD3-209ENST00000567223 NBPF1Q3BBV0 1214 aa26.92■■□□□ 1.9
SMPD3-209ENST00000567223 ABCA3Q99758 1704 aa26.92■■□□□ 1.9
SMPD3-209ENST00000567223 GPRASP1Q5JY77 1395 aa26.92■■□□□ 1.9
SMPD3-209ENST00000567223 PMFBP1Q8TBY8 1022 aa26.91■■□□□ 1.9
SMPD3-209ENST00000567223 TOPAZ1Q8N9V7 1692 aa26.9■■□□□ 1.9
SMPD3-209ENST00000567223 TRPM1Q7Z4N2 1603 aa26.89■■□□□ 1.9
SMPD3-209ENST00000567223 NUDT16Q96DE0 195 aaKnown RBP26.87■■□□□ 1.89
SMPD3-209ENST00000567223 POLR3AO14802 1390 aaPredicted RBP26.86■■□□□ 1.89
SMPD3-209ENST00000567223 SIN3AQ96ST3 1273 aa26.86■■□□□ 1.89
SMPD3-209ENST00000567223 NWD2Q9ULI1 1742 aa26.85■■□□□ 1.89
SMPD3-209ENST00000567223 UPF1Q92900 1129 aaKnown RBP eCLIP26.85■■□□□ 1.89
SMPD3-209ENST00000567223 CDK19Q9BWU1 502 aa26.85■■□□□ 1.89
SMPD3-209ENST00000567223 CENPJQ9HC77 1338 aaPredicted RBP26.85■■□□□ 1.89
SMPD3-209ENST00000567223 CCDC61Q9Y6R9 512 aa26.84■■□□□ 1.89
SMPD3-209ENST00000567223 UNC5CLQ8IV45 518 aa26.83■■□□□ 1.89
SMPD3-209ENST00000567223 PLEKHG3A1L390 1219 aa26.82■■□□□ 1.88
SMPD3-209ENST00000567223 NGDNQ8NEJ9 315 aaKnown RBP26.82■■□□□ 1.88
SMPD3-209ENST00000567223 CRYBG1Q9Y4K1 1723 aa26.82■■□□□ 1.88
SMPD3-209ENST00000567223 QRICH2Q9H0J4 1663 aa26.8■■□□□ 1.88
SMPD3-209ENST00000567223 GJD4Q96KN9 370 aaPredicted RBP26.8■■□□□ 1.88
SMPD3-209ENST00000567223 PLCH1Q4KWH8 1693 aa26.79■■□□□ 1.88
SMPD3-209ENST00000567223 TRIM26Q12899 539 aaPredicted RBP26.79■■□□□ 1.88
SMPD3-209ENST00000567223 HAP1P54257 671 aaPredicted RBP26.78■■□□□ 1.88
SMPD3-209ENST00000567223 CABLES1Q8TDN4 633 aa26.78■■□□□ 1.88
SMPD3-209ENST00000567223 LMOD2Q6P5Q4 547 aa26.77■■□□□ 1.88
SMPD3-209ENST00000567223 GLI3P10071 1580 aa26.76■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms