RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 SPHKAPQ2M3C7 1700 aa17.11■□□□□ 0.33
CLN3-226ENST00000567160 NPHP3Q7Z494 1330 aa17.1■□□□□ 0.33
CLN3-226ENST00000567160 DEFB132Q7Z7B7 95 aa17.09■□□□□ 0.33
CLN3-226ENST00000567160 BRWD3Q6RI45 1802 aa17.07■□□□□ 0.32
CLN3-226ENST00000567160 RALGAPBQ86X10 1494 aa17.07■□□□□ 0.32
CLN3-226ENST00000567160 NUP155O75694 1391 aa17.07■□□□□ 0.32
CLN3-226ENST00000567160 RRBP1Q9P2E9 1410 aaKnown RBP17.06■□□□□ 0.32
CLN3-226ENST00000567160 UNC5CLQ8IV45 518 aa17.06■□□□□ 0.32
CLN3-226ENST00000567160 GLI3P10071 1580 aa17.06■□□□□ 0.32
CLN3-226ENST00000567160 NEXMIFQ5QGS0 1516 aa17.05■□□□□ 0.32
CLN3-226ENST00000567160 LRPPRCP42704 1394 aaKnown RBP17.04■□□□□ 0.32
CLN3-226ENST00000567160 PXDNQ92626 1479 aa17.04■□□□□ 0.32
CLN3-226ENST00000567160 HFM1A2PYH4 1435 aa17.04■□□□□ 0.32
CLN3-226ENST00000567160 ROCK1Q13464 1354 aa17.03■□□□□ 0.32
CLN3-226ENST00000567160 ROBO2Q9HCK4 1378 aa17.03■□□□□ 0.32
CLN3-226ENST00000567160 ESCO1Q5FWF5 840 aa17.03■□□□□ 0.32
CLN3-226ENST00000567160 SLIT2O94813 1529 aa17.02■□□□□ 0.32
CLN3-226ENST00000567160 PRAG1Q86YV5 1406 aa17.02■□□□□ 0.31
CLN3-226ENST00000567160 HRCP23327 699 aa17.01■□□□□ 0.31
CLN3-226ENST00000567160 BAG6P46379 1132 aa17.01■□□□□ 0.31
CLN3-226ENST00000567160 SEPT12Q8IYM1 358 aa17.01■□□□□ 0.31
CLN3-226ENST00000567160 CDC42BPGQ6DT37 1551 aa17.01■□□□□ 0.31
CLN3-226ENST00000567160 KIF1BO60333 1816 aa17■□□□□ 0.31
CLN3-226ENST00000567160 PSDA5PKW4 1024 aaPredicted RBP17■□□□□ 0.31
CLN3-226ENST00000567160 FOXO3O43524 673 aa16.99■□□□□ 0.31
CLN3-226ENST00000567160 VGFO15240 615 aaPredicted RBP16.98■□□□□ 0.31
CLN3-226ENST00000567160 XPCQ01831 940 aaPredicted RBP16.98■□□□□ 0.31
CLN3-226ENST00000567160 KRT27Q7Z3Y8 459 aa16.98■□□□□ 0.31
CLN3-226ENST00000567160 USP32Q8NFA0 1604 aa16.97■□□□□ 0.31
CLN3-226ENST00000567160 ITGAEP38570 1179 aa16.97■□□□□ 0.31
CLN3-226ENST00000567160 CLTCL1P53675 1640 aa16.96■□□□□ 0.31
CLN3-226ENST00000567160 HAP1P54257 671 aaPredicted RBP16.96■□□□□ 0.31
CLN3-226ENST00000567160 VPS72Q15906 364 aa16.96■□□□□ 0.31
CLN3-226ENST00000567160 CCDC9Q9Y3X0 531 aaKnown RBP16.96■□□□□ 0.31
CLN3-226ENST00000567160 NWD2Q9ULI1 1742 aa16.95■□□□□ 0.3
CLN3-226ENST00000567160 ONECUT3O60422 494 aaPredicted RBP16.94■□□□□ 0.3
CLN3-226ENST00000567160 CCDC144AA2RUR9 1427 aa16.93■□□□□ 0.3
CLN3-226ENST00000567160 SPATA31A3Q5VYP0 1347 aa16.93■□□□□ 0.3
CLN3-226ENST00000567160 KIF1AQ12756 1690 aa16.92■□□□□ 0.3
CLN3-226ENST00000567160 PLCH1Q4KWH8 1693 aa16.92■□□□□ 0.3
CLN3-226ENST00000567160 A0A0G2JS52 829 aa16.92■□□□□ 0.3
CLN3-226ENST00000567160 MYT1Q01538 1121 aa16.92■□□□□ 0.3
CLN3-226ENST00000567160 TRIM26Q12899 539 aaPredicted RBP16.92■□□□□ 0.3
CLN3-226ENST00000567160 RGPD1P0DJD0 1748 aa16.92■□□□□ 0.3
CLN3-226ENST00000567160 YY1P25490 414 aa16.91■□□□□ 0.3
CLN3-226ENST00000567160 NAIPQ13075 1403 aa16.9■□□□□ 0.3
CLN3-226ENST00000567160 R3HDM1Q15032 1099 aaKnown RBP16.89■□□□□ 0.29
CLN3-226ENST00000567160 RPGRIP1LQ68CZ1 1315 aa16.89■□□□□ 0.29
CLN3-226ENST00000567160 NUTM2FA1L443 756 aa16.87■□□□□ 0.29
CLN3-226ENST00000567160 EN1Q05925 392 aaPredicted RBP16.87■□□□□ 0.29
CLN3-226ENST00000567160 PSME1Q06323 249 aa16.86■□□□□ 0.29
CLN3-226ENST00000567160 KRT28Q7Z3Y7 464 aa16.86■□□□□ 0.29
CLN3-226ENST00000567160 TNS3Q68CZ2 1445 aa16.86■□□□□ 0.29
CLN3-226ENST00000567160 PPLO60437 1756 aa16.85■□□□□ 0.29
CLN3-226ENST00000567160 DISP2A7MBM2 1401 aa16.85■□□□□ 0.29
CLN3-226ENST00000567160 FMN2Q9NZ56 1722 aa16.84■□□□□ 0.29
CLN3-226ENST00000567160 DCAF8L1A6NGE4 600 aa16.83■□□□□ 0.28
CLN3-226ENST00000567160 FAM98CQ17RN3 349 aaKnown RBP16.83■□□□□ 0.28
CLN3-226ENST00000567160 ABCA3Q99758 1704 aa16.83■□□□□ 0.28
CLN3-226ENST00000567160 ADGRB2O60241 1585 aa16.82■□□□□ 0.28
CLN3-226ENST00000567160 TECPR2O15040 1411 aa16.82■□□□□ 0.28
CLN3-226ENST00000567160 ARHGEF10O15013 1369 aa16.82■□□□□ 0.28
CLN3-226ENST00000567160 CABLES1Q8TDN4 633 aa16.82■□□□□ 0.28
CLN3-226ENST00000567160 TNS1Q9HBL0 1735 aaKnown RBP16.81■□□□□ 0.28
CLN3-226ENST00000567160 SBNO1A3KN83 1393 aa16.8■□□□□ 0.28
CLN3-226ENST00000567160 NRAPQ86VF7 1730 aa16.8■□□□□ 0.28
CLN3-226ENST00000567160 PLEKHG5O94827 1062 aa16.8■□□□□ 0.28
CLN3-226ENST00000567160 LMOD2Q6P5Q4 547 aa16.8■□□□□ 0.28
CLN3-226ENST00000567160 WAPLQ7Z5K2 1190 aa16.8■□□□□ 0.28
CLN3-226ENST00000567160 PCGF6Q9BYE7 350 aa16.8■□□□□ 0.28
CLN3-226ENST00000567160 STK26Q9P289 416 aa16.8■□□□□ 0.28
CLN3-226ENST00000567160 KNDC1Q76NI1 1749 aa16.79■□□□□ 0.28
CLN3-226ENST00000567160 FAM83GA6ND36 823 aa16.78■□□□□ 0.28
CLN3-226ENST00000567160 PHF8Q9UPP1 1060 aa16.78■□□□□ 0.28
CLN3-226ENST00000567160 PARD3Q8TEW0 1356 aa16.77■□□□□ 0.28
CLN3-226ENST00000567160 IFT172Q9UG01 1749 aa16.77■□□□□ 0.28
CLN3-226ENST00000567160 EZH2Q15910 746 aaKnown RBP16.77■□□□□ 0.28
CLN3-226ENST00000567160 RGPD8O14715 1765 aaPredicted RBP16.77■□□□□ 0.27
CLN3-226ENST00000567160 ABCC11Q96J66 1382 aa16.77■□□□□ 0.27
CLN3-226ENST00000567160 BTG4Q9NY30 223 aa16.76■□□□□ 0.27
CLN3-226ENST00000567160 COL14A1Q05707 1796 aaKnown RBP16.76■□□□□ 0.27
CLN3-226ENST00000567160 FAM182BQ5T319 152 aa16.75■□□□□ 0.27
CLN3-226ENST00000567160 PPP1R1BQ9UD71 204 aaPredicted RBP16.75■□□□□ 0.27
CLN3-226ENST00000567160 NRXN1Q9ULB1 1477 aa16.74■□□□□ 0.27
CLN3-226ENST00000567160 CAMKK2Q96RR4 588 aa16.74■□□□□ 0.27
CLN3-226ENST00000567160 THSD7AQ9UPZ6 1657 aa16.74■□□□□ 0.27
CLN3-226ENST00000567160 PLEKHH1Q9ULM0 1364 aa16.74■□□□□ 0.27
CLN3-226ENST00000567160 SPATA31A5Q5VU36 1347 aa16.73■□□□□ 0.27
CLN3-226ENST00000567160 SPATA31A7Q8IWB4 1347 aa16.73■□□□□ 0.27
CLN3-226ENST00000567160 NBPF8Q3BBV2 869 aa16.72■□□□□ 0.27
CLN3-226ENST00000567160 NBPF14Q5TI25 921 aa16.72■□□□□ 0.27
CLN3-226ENST00000567160 FAM196AQ6ZSG2 479 aa16.72■□□□□ 0.27
CLN3-226ENST00000567160 ADGRF5Q8IZF2 1346 aa16.71■□□□□ 0.27
CLN3-226ENST00000567160 APBA3O96018 575 aa16.71■□□□□ 0.27
CLN3-226ENST00000567160 NINLQ9Y2I6 1382 aa16.71■□□□□ 0.27
CLN3-226ENST00000567160 RREB1Q92766 1687 aa16.7■□□□□ 0.26
CLN3-226ENST00000567160 ANKRD30BQ9BXX2 1392 aa16.7■□□□□ 0.26
CLN3-226ENST00000567160 TRIM37O94972 964 aa16.7■□□□□ 0.26
CLN3-226ENST00000567160 SPON1Q9HCB6 807 aa16.7■□□□□ 0.26
CLN3-226ENST00000567160 YTHDC2Q9H6S0 1430 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms