RNA–Protein interactions for RNA: ENST00000567003.1

PALB2-205, Transcript of partner and localizer of BRCA2, humanhuman

TSL 3

Gene PALB2, Length 789 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-205ENST00000567003 RPGRIP1LQ68CZ1 1315 aa23.4■■□□□ 1.34
PALB2-205ENST00000567003 XPCQ01831 940 aaPredicted RBP23.39■■□□□ 1.33
PALB2-205ENST00000567003 CDC42BPGQ6DT37 1551 aa23.39■■□□□ 1.33
PALB2-205ENST00000567003 EP400Q96L91 3159 aa23.38■■□□□ 1.33
PALB2-205ENST00000567003 MYOM2P54296 1465 aa23.38■■□□□ 1.33
PALB2-205ENST00000567003 ESCO1Q5FWF5 840 aa23.38■■□□□ 1.33
PALB2-205ENST00000567003 ATRNO75882 1429 aa23.38■■□□□ 1.33
PALB2-205ENST00000567003 PXDNQ92626 1479 aa23.37■■□□□ 1.33
PALB2-205ENST00000567003 TRPC5Q9UL62 973 aaPredicted RBP23.37■■□□□ 1.33
PALB2-205ENST00000567003 ATAD2Q6PL18 1390 aa23.37■■□□□ 1.33
PALB2-205ENST00000567003 ADGRF5Q8IZF2 1346 aa23.36■■□□□ 1.33
PALB2-205ENST00000567003 FNBP4Q8N3X1 1017 aaPredicted RBP23.36■■□□□ 1.33
PALB2-205ENST00000567003 NUTM2FA1L443 756 aa23.35■■□□□ 1.33
PALB2-205ENST00000567003 STK26Q9P289 416 aa23.35■■□□□ 1.33
PALB2-205ENST00000567003 NPHP3Q7Z494 1330 aa23.33■■□□□ 1.33
PALB2-205ENST00000567003 MARF1Q9Y4F3 1742 aaKnown RBP23.33■■□□□ 1.33
PALB2-205ENST00000567003 WAPLQ7Z5K2 1190 aa23.33■■□□□ 1.33
PALB2-205ENST00000567003 FOXO3O43524 673 aa23.32■■□□□ 1.32
PALB2-205ENST00000567003 BCL9LQ86UU0 1499 aa23.31■■□□□ 1.32
PALB2-205ENST00000567003 PLEKHH1Q9ULM0 1364 aa23.31■■□□□ 1.32
PALB2-205ENST00000567003 RGL3Q3MIN7 710 aa23.31■■□□□ 1.32
PALB2-205ENST00000567003 IFT172Q9UG01 1749 aa23.3■■□□□ 1.32
PALB2-205ENST00000567003 TMEM132EQ6IEE7 984 aa23.28■■□□□ 1.32
PALB2-205ENST00000567003 LRPPRCP42704 1394 aaKnown RBP23.27■■□□□ 1.32
PALB2-205ENST00000567003 CCDC144AA2RUR9 1427 aa23.27■■□□□ 1.32
PALB2-205ENST00000567003 TECPR2O15040 1411 aa23.27■■□□□ 1.32
PALB2-205ENST00000567003 SPATA31E1Q6ZUB1 1445 aa23.27■■□□□ 1.32
PALB2-205ENST00000567003 KNDC1Q76NI1 1749 aa23.27■■□□□ 1.32
PALB2-205ENST00000567003 FMN2Q9NZ56 1722 aa23.27■■□□□ 1.32
PALB2-205ENST00000567003 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.22■■□□□ 1.31
PALB2-205ENST00000567003 GJD4Q96KN9 370 aaPredicted RBP23.22■■□□□ 1.31
PALB2-205ENST00000567003 PIK3C2GO75747 1445 aa23.22■■□□□ 1.31
PALB2-205ENST00000567003 ABCC11Q96J66 1382 aa23.21■■□□□ 1.31
PALB2-205ENST00000567003 GLI3P10071 1580 aa23.21■■□□□ 1.31
PALB2-205ENST00000567003 RGPD8O14715 1765 aaPredicted RBP23.2■■□□□ 1.3
PALB2-205ENST00000567003 KIF1AQ12756 1690 aa23.2■■□□□ 1.3
PALB2-205ENST00000567003 RALGAPBQ86X10 1494 aa23.2■■□□□ 1.3
PALB2-205ENST00000567003 YTHDC2Q9H6S0 1430 aaKnown RBP23.2■■□□□ 1.3
PALB2-205ENST00000567003 ANKRD30BQ9BXX2 1392 aa23.2■■□□□ 1.3
PALB2-205ENST00000567003 SPATA31A3Q5VYP0 1347 aa23.19■■□□□ 1.3
PALB2-205ENST00000567003 PLEKHG5O94827 1062 aa23.19■■□□□ 1.3
PALB2-205ENST00000567003 USP32Q8NFA0 1604 aa23.19■■□□□ 1.3
PALB2-205ENST00000567003 SLIT2O94813 1529 aa23.18■■□□□ 1.3
PALB2-205ENST00000567003 MPHOSPH9Q99550 1183 aa23.18■■□□□ 1.3
PALB2-205ENST00000567003 ZRANB1Q9UGI0 708 aa23.18■■□□□ 1.3
PALB2-205ENST00000567003 BRWD3Q6RI45 1802 aa23.17■■□□□ 1.3
PALB2-205ENST00000567003 UNC5CLQ8IV45 518 aa23.17■■□□□ 1.3
PALB2-205ENST00000567003 KRT28Q7Z3Y7 464 aa23.16■■□□□ 1.3
PALB2-205ENST00000567003 CABLES1Q8TDN4 633 aa23.14■■□□□ 1.29
PALB2-205ENST00000567003 SAFB2Q14151 953 aaKnown RBP eCLIP23.12■■□□□ 1.29
PALB2-205ENST00000567003 TNS3Q68CZ2 1445 aa23.12■■□□□ 1.29
PALB2-205ENST00000567003 ABCA3Q99758 1704 aa23.12■■□□□ 1.29
PALB2-205ENST00000567003 PLCH1Q4KWH8 1693 aa23.12■■□□□ 1.29
PALB2-205ENST00000567003 PHF8Q9UPP1 1060 aa23.11■■□□□ 1.29
PALB2-205ENST00000567003 HAP1P54257 671 aaPredicted RBP23.1■■□□□ 1.29
PALB2-205ENST00000567003 CFAP70Q5T0N1 1121 aa23.1■■□□□ 1.29
PALB2-205ENST00000567003 CCDC125Q86Z20 511 aa23.1■■□□□ 1.29
PALB2-205ENST00000567003 DEFB132Q7Z7B7 95 aa23.08■■□□□ 1.29
PALB2-205ENST00000567003 C14orf93Q9H972 538 aaKnown RBP23.08■■□□□ 1.29
PALB2-205ENST00000567003 NRXN1Q9ULB1 1477 aa23.08■■□□□ 1.29
PALB2-205ENST00000567003 BLMP54132 1417 aaPredicted RBP23.08■■□□□ 1.28
PALB2-205ENST00000567003 LMOD2Q6P5Q4 547 aa23.07■■□□□ 1.28
PALB2-205ENST00000567003 PRAM1Q96QH2 718 aa23.07■■□□□ 1.28
PALB2-205ENST00000567003 SEPT12Q8IYM1 358 aa23.06■■□□□ 1.28
PALB2-205ENST00000567003 SIRT1Q96EB6 747 aa23.06■■□□□ 1.28
PALB2-205ENST00000567003 NWD2Q9ULI1 1742 aa23.05■■□□□ 1.28
PALB2-205ENST00000567003 CCDC9Q9Y3X0 531 aaKnown RBP23.05■■□□□ 1.28
PALB2-205ENST00000567003 DHX57Q6P158 1386 aaKnown RBP23.04■■□□□ 1.28
PALB2-205ENST00000567003 PSME1Q06323 249 aa23.04■■□□□ 1.28
PALB2-205ENST00000567003 VPS72Q15906 364 aa23.04■■□□□ 1.28
PALB2-205ENST00000567003 PMFBP1Q8TBY8 1022 aa23.04■■□□□ 1.28
PALB2-205ENST00000567003 SBNO1A3KN83 1393 aa23.03■■□□□ 1.28
PALB2-205ENST00000567003 NRAPQ86VF7 1730 aa23■■□□□ 1.27
PALB2-205ENST00000567003 ARHGEF10O15013 1369 aa23■■□□□ 1.27
PALB2-205ENST00000567003 TRPM3Q9HCF6 1732 aaPredicted RBP22.99■■□□□ 1.27
PALB2-205ENST00000567003 FAM83GA6ND36 823 aa22.99■■□□□ 1.27
PALB2-205ENST00000567003 POGKQ9P215 609 aa22.99■■□□□ 1.27
PALB2-205ENST00000567003 DLC1Q96QB1 1528 aa22.98■■□□□ 1.27
PALB2-205ENST00000567003 HIRIP3Q9BW71 556 aaPredicted RBP22.98■■□□□ 1.27
PALB2-205ENST00000567003 ADGRB2O60241 1585 aa22.97■■□□□ 1.27
PALB2-205ENST00000567003 SF3B2Q13435 895 aaKnown RBP22.97■■□□□ 1.27
PALB2-205ENST00000567003 KRT27Q7Z3Y8 459 aa22.97■■□□□ 1.27
PALB2-205ENST00000567003 ANKARQ7Z5J8 1434 aa22.97■■□□□ 1.27
PALB2-205ENST00000567003 ADGRB1O14514 1584 aa22.97■■□□□ 1.27
PALB2-205ENST00000567003 A0A0G2JS52 829 aa22.96■■□□□ 1.27
PALB2-205ENST00000567003 MYT1Q01538 1121 aa22.96■■□□□ 1.27
PALB2-205ENST00000567003 ONECUT3O60422 494 aaPredicted RBP22.95■■□□□ 1.26
PALB2-205ENST00000567003 ALS2Q96Q42 1657 aa22.95■■□□□ 1.26
PALB2-205ENST00000567003 MINK1Q8N4C8 1332 aaPredicted RBP22.94■■□□□ 1.26
PALB2-205ENST00000567003 PRR36Q9H6K5 1346 aa22.94■■□□□ 1.26
PALB2-205ENST00000567003 FAM98CQ17RN3 349 aaKnown RBP22.94■■□□□ 1.26
PALB2-205ENST00000567003 TRAK1Q9UPV9 953 aa22.94■■□□□ 1.26
PALB2-205ENST00000567003 BTG4Q9NY30 223 aa22.93■■□□□ 1.26
PALB2-205ENST00000567003 COL14A1Q05707 1796 aaKnown RBP22.91■■□□□ 1.26
PALB2-205ENST00000567003 PSDA5PKW4 1024 aaPredicted RBP22.9■■□□□ 1.26
PALB2-205ENST00000567003 CRYBG1Q9Y4K1 1723 aa22.9■■□□□ 1.26
PALB2-205ENST00000567003 ACIN1Q9UKV3 1341 aaKnown RBP22.89■■□□□ 1.26
PALB2-205ENST00000567003 TULP4Q9NRJ4 1543 aa22.89■■□□□ 1.26
PALB2-205ENST00000567003 FAM182BQ5T319 152 aa22.89■■□□□ 1.25
PALB2-205ENST00000567003 KDM2AQ9Y2K7 1162 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms