RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 BCL9LQ86UU0 1499 aa25.96■■□□□ 1.75
CDH3-205ENST00000566808 LRP5O75197 1615 aa25.95■■□□□ 1.74
CDH3-205ENST00000566808 ORAI2Q96SN7 254 aa25.93■■□□□ 1.74
CDH3-205ENST00000566808 CDC42BPGQ6DT37 1551 aa25.93■■□□□ 1.74
CDH3-205ENST00000566808 ROBO2Q9HCK4 1378 aa25.92■■□□□ 1.74
CDH3-205ENST00000566808 BLMP54132 1417 aaPredicted RBP25.91■■□□□ 1.74
CDH3-205ENST00000566808 PXDNQ92626 1479 aa25.91■■□□□ 1.74
CDH3-205ENST00000566808 HFM1A2PYH4 1435 aa25.88■■□□□ 1.73
CDH3-205ENST00000566808 NPHP3Q7Z494 1330 aa25.88■■□□□ 1.73
CDH3-205ENST00000566808 GLI3P10071 1580 aa25.87■■□□□ 1.73
CDH3-205ENST00000566808 BRWD3Q6RI45 1802 aa25.87■■□□□ 1.73
CDH3-205ENST00000566808 GJD4Q96KN9 370 aaPredicted RBP25.86■■□□□ 1.73
CDH3-205ENST00000566808 RALGAPBQ86X10 1494 aa25.84■■□□□ 1.73
CDH3-205ENST00000566808 SLIT2O94813 1529 aa25.8■■□□□ 1.72
CDH3-205ENST00000566808 USP32Q8NFA0 1604 aa25.8■■□□□ 1.72
CDH3-205ENST00000566808 PPLO60437 1756 aa25.79■■□□□ 1.72
CDH3-205ENST00000566808 VGFO15240 615 aaPredicted RBP25.77■■□□□ 1.72
CDH3-205ENST00000566808 LRPPRCP42704 1394 aaKnown RBP25.77■■□□□ 1.72
CDH3-205ENST00000566808 ESCO1Q5FWF5 840 aa25.76■■□□□ 1.71
CDH3-205ENST00000566808 KIF1AQ12756 1690 aa25.76■■□□□ 1.71
CDH3-205ENST00000566808 UNC5CLQ8IV45 518 aa25.75■■□□□ 1.71
CDH3-205ENST00000566808 NWD2Q9ULI1 1742 aa25.74■■□□□ 1.71
CDH3-205ENST00000566808 SF3B2Q13435 895 aaKnown RBP25.73■■□□□ 1.71
CDH3-205ENST00000566808 DEFB132Q7Z7B7 95 aa25.73■■□□□ 1.71
CDH3-205ENST00000566808 PLCH1Q4KWH8 1693 aa25.73■■□□□ 1.71
CDH3-205ENST00000566808 NAIPQ13075 1403 aa25.71■■□□□ 1.71
CDH3-205ENST00000566808 FOXO3O43524 673 aa25.71■■□□□ 1.71
CDH3-205ENST00000566808 XPCQ01831 940 aaPredicted RBP25.71■■□□□ 1.71
CDH3-205ENST00000566808 FMN2Q9NZ56 1722 aa25.71■■□□□ 1.71
CDH3-205ENST00000566808 KNDC1Q76NI1 1749 aa25.69■■□□□ 1.7
CDH3-205ENST00000566808 ITGAEP38570 1179 aa25.69■■□□□ 1.7
CDH3-205ENST00000566808 CCDC144AA2RUR9 1427 aa25.69■■□□□ 1.7
CDH3-205ENST00000566808 ABCA3Q99758 1704 aa25.68■■□□□ 1.7
CDH3-205ENST00000566808 RPGRIP1LQ68CZ1 1315 aa25.68■■□□□ 1.7
CDH3-205ENST00000566808 TECPR2O15040 1411 aa25.67■■□□□ 1.7
CDH3-205ENST00000566808 SPATA31A3Q5VYP0 1347 aa25.64■■□□□ 1.7
CDH3-205ENST00000566808 SEPT12Q8IYM1 358 aa25.64■■□□□ 1.7
CDH3-205ENST00000566808 VPS72Q15906 364 aa25.62■■□□□ 1.69
CDH3-205ENST00000566808 RGPD1P0DJD0 1748 aa25.62■■□□□ 1.69
CDH3-205ENST00000566808 IFT172Q9UG01 1749 aa25.61■■□□□ 1.69
CDH3-205ENST00000566808 TNS3Q68CZ2 1445 aa25.61■■□□□ 1.69
CDH3-205ENST00000566808 KRT27Q7Z3Y8 459 aa25.59■■□□□ 1.69
CDH3-205ENST00000566808 NRAPQ86VF7 1730 aa25.58■■□□□ 1.69
CDH3-205ENST00000566808 HRCP23327 699 aa25.58■■□□□ 1.69
CDH3-205ENST00000566808 BAG6P46379 1132 aa25.58■■□□□ 1.69
CDH3-205ENST00000566808 NUTM2FA1L443 756 aa25.57■■□□□ 1.68
CDH3-205ENST00000566808 PSDA5PKW4 1024 aaPredicted RBP25.57■■□□□ 1.68
CDH3-205ENST00000566808 ONECUT3O60422 494 aaPredicted RBP25.57■■□□□ 1.68
CDH3-205ENST00000566808 RGPD8O14715 1765 aaPredicted RBP25.56■■□□□ 1.68
CDH3-205ENST00000566808 RRBP1Q9P2E9 1410 aaKnown RBP25.55■■□□□ 1.68
CDH3-205ENST00000566808 HAP1P54257 671 aaPredicted RBP25.55■■□□□ 1.68
CDH3-205ENST00000566808 CCDC9Q9Y3X0 531 aaKnown RBP25.53■■□□□ 1.68
CDH3-205ENST00000566808 ABCC11Q96J66 1382 aa25.52■■□□□ 1.68
CDH3-205ENST00000566808 TNS1Q9HBL0 1735 aaKnown RBP25.51■■□□□ 1.68
CDH3-205ENST00000566808 KRT28Q7Z3Y7 464 aa25.51■■□□□ 1.67
CDH3-205ENST00000566808 WAPLQ7Z5K2 1190 aa25.51■■□□□ 1.67
CDH3-205ENST00000566808 PLEKHH1Q9ULM0 1364 aa25.51■■□□□ 1.67
CDH3-205ENST00000566808 ARHGEF10O15013 1369 aa25.5■■□□□ 1.67
CDH3-205ENST00000566808 SBNO1A3KN83 1393 aa25.49■■□□□ 1.67
CDH3-205ENST00000566808 STK26Q9P289 416 aa25.49■■□□□ 1.67
CDH3-205ENST00000566808 NRXN1Q9ULB1 1477 aa25.48■■□□□ 1.67
CDH3-205ENST00000566808 DISP2A7MBM2 1401 aa25.48■■□□□ 1.67
CDH3-205ENST00000566808 ADGRF5Q8IZF2 1346 aa25.47■■□□□ 1.67
CDH3-205ENST00000566808 A0A0G2JS52 829 aa25.47■■□□□ 1.67
CDH3-205ENST00000566808 MYT1Q01538 1121 aa25.47■■□□□ 1.67
CDH3-205ENST00000566808 COL14A1Q05707 1796 aaKnown RBP25.46■■□□□ 1.67
CDH3-205ENST00000566808 PSME1Q06323 249 aa25.46■■□□□ 1.67
CDH3-205ENST00000566808 CABLES1Q8TDN4 633 aa25.46■■□□□ 1.67
CDH3-205ENST00000566808 ADGRB2O60241 1585 aa25.46■■□□□ 1.67
CDH3-205ENST00000566808 PIK3C2GO75747 1445 aa25.46■■□□□ 1.67
CDH3-205ENST00000566808 ANKRD30BQ9BXX2 1392 aa25.45■■□□□ 1.67
CDH3-205ENST00000566808 YTHDC2Q9H6S0 1430 aaKnown RBP25.45■■□□□ 1.66
CDH3-205ENST00000566808 PHF8Q9UPP1 1060 aa25.44■■□□□ 1.66
CDH3-205ENST00000566808 THSD7AQ9UPZ6 1657 aa25.44■■□□□ 1.66
CDH3-205ENST00000566808 TRPM3Q9HCF6 1732 aaPredicted RBP25.42■■□□□ 1.66
CDH3-205ENST00000566808 SPATA31E1Q6ZUB1 1445 aa25.41■■□□□ 1.66
CDH3-205ENST00000566808 FAM98CQ17RN3 349 aaKnown RBP25.41■■□□□ 1.66
CDH3-205ENST00000566808 SLC4A1APQ9BWU0 796 aaKnown RBP25.41■■□□□ 1.66
CDH3-205ENST00000566808 EN1Q05925 392 aaPredicted RBP25.4■■□□□ 1.66
CDH3-205ENST00000566808 R3HDM1Q15032 1099 aaKnown RBP25.4■■□□□ 1.66
CDH3-205ENST00000566808 ALS2Q96Q42 1657 aa25.39■■□□□ 1.66
CDH3-205ENST00000566808 FAM83GA6ND36 823 aa25.38■■□□□ 1.65
CDH3-205ENST00000566808 PLEKHG5O94827 1062 aa25.38■■□□□ 1.65
CDH3-205ENST00000566808 TMEM132EQ6IEE7 984 aa25.38■■□□□ 1.65
CDH3-205ENST00000566808 LMOD2Q6P5Q4 547 aa25.38■■□□□ 1.65
CDH3-205ENST00000566808 CRYBG1Q9Y4K1 1723 aa25.37■■□□□ 1.65
CDH3-205ENST00000566808 SIRT1Q96EB6 747 aa25.36■■□□□ 1.65
CDH3-205ENST00000566808 ANKARQ7Z5J8 1434 aa25.36■■□□□ 1.65
CDH3-205ENST00000566808 RREB1Q92766 1687 aa25.34■■□□□ 1.65
CDH3-205ENST00000566808 BTG4Q9NY30 223 aa25.34■■□□□ 1.65
CDH3-205ENST00000566808 PARD3Q8TEW0 1356 aa25.32■■□□□ 1.64
CDH3-205ENST00000566808 SPATA31A5Q5VU36 1347 aa25.31■■□□□ 1.64
CDH3-205ENST00000566808 SPATA31A7Q8IWB4 1347 aa25.31■■□□□ 1.64
CDH3-205ENST00000566808 NUP188Q5SRE5 1749 aa25.3■■□□□ 1.64
CDH3-205ENST00000566808 RGL3Q3MIN7 710 aa25.3■■□□□ 1.64
CDH3-205ENST00000566808 FAM182BQ5T319 152 aa25.3■■□□□ 1.64
CDH3-205ENST00000566808 DLC1Q96QB1 1528 aa25.28■■□□□ 1.64
CDH3-205ENST00000566808 YY1P25490 414 aa25.28■■□□□ 1.64
CDH3-205ENST00000566808 EZH2Q15910 746 aaKnown RBP25.27■■□□□ 1.64
CDH3-205ENST00000566808 PPARGC1BQ86YN6 1023 aaKnown RBP25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms