RNA–Protein interactions for RNA: ENST00000566756.5

CMTM3-213, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,950 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-213ENST00000566756 UBR1Q8IWV7 1749 aa22.13■■□□□ 1.13
CMTM3-213ENST00000566756 MS4A1P11836 297 aa22.12■■□□□ 1.13
CMTM3-213ENST00000566756 TMEM132EQ6IEE7 984 aa22.12■■□□□ 1.13
CMTM3-213ENST00000566756 ALKQ9UM73 1620 aa22.12■■□□□ 1.13
CMTM3-213ENST00000566756 PPP2R1AP30153 589 aa22.12■■□□□ 1.13
CMTM3-213ENST00000566756 CDCA7LQ96GN5 454 aa22.12■■□□□ 1.13
CMTM3-213ENST00000566756 NLRP1Q9C000 1473 aa22.11■■□□□ 1.13
CMTM3-213ENST00000566756 IPO9Q96P70 1041 aaKnown RBP22.11■■□□□ 1.13
CMTM3-213ENST00000566756 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.1■■□□□ 1.13
CMTM3-213ENST00000566756 TRAK1Q9UPV9 953 aa22.1■■□□□ 1.13
CMTM3-213ENST00000566756 SALL2Q9Y467 1007 aaPredicted RBP22.08■■□□□ 1.13
CMTM3-213ENST00000566756 SETD1AO15047 1707 aaKnown RBP22.08■■□□□ 1.13
CMTM3-213ENST00000566756 HDGFP51858 240 aaKnown RBP22.08■■□□□ 1.12
CMTM3-213ENST00000566756 ADAMTS8Q9UP79 889 aa22.07■■□□□ 1.12
CMTM3-213ENST00000566756 WDR43Q15061 677 aaKnown RBP eCLIP22.06■■□□□ 1.12
CMTM3-213ENST00000566756 ZNF521Q96K83 1311 aa22.06■■□□□ 1.12
CMTM3-213ENST00000566756 PUS7Q96PZ0 661 aaKnown RBP22.05■■□□□ 1.12
CMTM3-213ENST00000566756 YTHDC2Q9H6S0 1430 aaKnown RBP22.05■■□□□ 1.12
CMTM3-213ENST00000566756 NRXN3Q9Y4C0 1643 aa22.04■■□□□ 1.12
CMTM3-213ENST00000566756 TMEM2Q9UHN6 1383 aa22.03■■□□□ 1.12
CMTM3-213ENST00000566756 PTPRMP28827 1452 aa22.02■■□□□ 1.12
CMTM3-213ENST00000566756 NGEFQ8N5V2 710 aa22.01■■□□□ 1.11
CMTM3-213ENST00000566756 DLC1Q96QB1 1528 aa22.01■■□□□ 1.11
CMTM3-213ENST00000566756 CEBPAP49715 358 aaPredicted RBP22.01■■□□□ 1.11
CMTM3-213ENST00000566756 PLEKHH1Q9ULM0 1364 aa22.01■■□□□ 1.11
CMTM3-213ENST00000566756 DUSP27Q5VZP5 1158 aa21.99■■□□□ 1.11
CMTM3-213ENST00000566756 ZBTB47Q9UFB7 747 aaPredicted RBP21.99■■□□□ 1.11
CMTM3-213ENST00000566756 GOLGA2Q08379 1002 aa21.98■■□□□ 1.11
CMTM3-213ENST00000566756 BACH2Q9BYV9 841 aa21.98■■□□□ 1.11
CMTM3-213ENST00000566756 ADAMTSL3P82987 1691 aa21.98■■□□□ 1.11
CMTM3-213ENST00000566756 PAK3O75914 559 aaPredicted RBP21.98■■□□□ 1.11
CMTM3-213ENST00000566756 PDE4AP27815 886 aa21.98■■□□□ 1.11
CMTM3-213ENST00000566756 TULP4Q9NRJ4 1543 aa21.97■■□□□ 1.11
CMTM3-213ENST00000566756 EVC2Q86UK5 1308 aa21.97■■□□□ 1.11
CMTM3-213ENST00000566756 CRBNQ96SW2 442 aa21.97■■□□□ 1.11
CMTM3-213ENST00000566756 SLIT1O75093 1534 aa21.96■■□□□ 1.11
CMTM3-213ENST00000566756 TRMT2AQ8IZ69 625 aaKnown RBP21.96■■□□□ 1.11
CMTM3-213ENST00000566756 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.96■■□□□ 1.11
CMTM3-213ENST00000566756 ABCC11Q96J66 1382 aa21.95■■□□□ 1.1
CMTM3-213ENST00000566756 RIMS1Q86UR5 1692 aaKnown RBP21.95■■□□□ 1.1
CMTM3-213ENST00000566756 ARHGAP23Q9P227 1491 aa21.95■■□□□ 1.1
CMTM3-213ENST00000566756 KNDC1Q76NI1 1749 aa21.94■■□□□ 1.1
CMTM3-213ENST00000566756 STK26Q9P289 416 aa21.94■■□□□ 1.1
CMTM3-213ENST00000566756 PLIN1O60240 522 aa21.93■■□□□ 1.1
CMTM3-213ENST00000566756 SLFN5Q08AF3 891 aa21.93■■□□□ 1.1
CMTM3-213ENST00000566756 PLEKHG1Q9ULL1 1385 aa21.92■■□□□ 1.1
CMTM3-213ENST00000566756 KDM2BQ8NHM5 1336 aa21.92■■□□□ 1.1
CMTM3-213ENST00000566756 PRAM1Q96QH2 718 aa21.9■■□□□ 1.1
CMTM3-213ENST00000566756 CENPQQ7L2Z9 268 aaPredicted RBP21.9■■□□□ 1.1
CMTM3-213ENST00000566756 SIRT1Q96EB6 747 aa21.9■■□□□ 1.1
CMTM3-213ENST00000566756 POGKQ9P215 609 aa21.9■■□□□ 1.1
CMTM3-213ENST00000566756 TECPR2O15040 1411 aa21.89■■□□□ 1.1
CMTM3-213ENST00000566756 THEMISQ8N1K5 641 aaPredicted RBP21.89■■□□□ 1.09
CMTM3-213ENST00000566756 BCL11AQ9H165 835 aa21.89■■□□□ 1.09
CMTM3-213ENST00000566756 SENP3Q9H4L4 574 aaPredicted RBP21.89■■□□□ 1.09
CMTM3-213ENST00000566756 SETD1BQ9UPS6 1966 aaKnown RBP21.89■■□□□ 1.09
CMTM3-213ENST00000566756 ADAMTS13Q76LX8 1427 aa21.89■■□□□ 1.09
CMTM3-213ENST00000566756 POLR3AO14802 1390 aaPredicted RBP21.89■■□□□ 1.09
CMTM3-213ENST00000566756 METP08581 1390 aa21.89■■□□□ 1.09
CMTM3-213ENST00000566756 NINLQ9Y2I6 1382 aa21.89■■□□□ 1.09
CMTM3-213ENST00000566756 NKTRP30414 1462 aaKnown RBP21.88■■□□□ 1.09
CMTM3-213ENST00000566756 LTKP29376 864 aa21.87■■□□□ 1.09
CMTM3-213ENST00000566756 EID1Q9Y6B2 187 aa21.87■■□□□ 1.09
CMTM3-213ENST00000566756 USP32Q8NFA0 1604 aa21.87■■□□□ 1.09
CMTM3-213ENST00000566756 MED14O60244 1454 aa21.87■■□□□ 1.09
CMTM3-213ENST00000566756 CEP170BQ9Y4F5 1589 aaPredicted RBP21.87■■□□□ 1.09
CMTM3-213ENST00000566756 FAM135BQ49AJ0 1406 aa21.86■■□□□ 1.09
CMTM3-213ENST00000566756 CPS1P31327 1500 aa21.86■■□□□ 1.09
CMTM3-213ENST00000566756 TXNDC2Q86VQ3 553 aa21.86■■□□□ 1.09
CMTM3-213ENST00000566756 CARD14Q9BXL6 1004 aa21.86■■□□□ 1.09
CMTM3-213ENST00000566756 E9PSI1 815 aa21.85■■□□□ 1.09
CMTM3-213ENST00000566756 ATAD2Q6PL18 1390 aa21.84■■□□□ 1.09
CMTM3-213ENST00000566756 ZNF142P52746 1687 aaPredicted RBP21.84■■□□□ 1.09
CMTM3-213ENST00000566756 SAFB2Q14151 953 aaKnown RBP eCLIP21.84■■□□□ 1.09
CMTM3-213ENST00000566756 C20orf194Q5TEA3 1177 aa21.84■■□□□ 1.09
CMTM3-213ENST00000566756 SLC12A5Q9H2X9 1139 aa21.84■■□□□ 1.09
CMTM3-213ENST00000566756 ANKRD36BQ8N2N9 1353 aa21.83■■□□□ 1.08
CMTM3-213ENST00000566756 DIP2AQ14689 1571 aa21.82■■□□□ 1.08
CMTM3-213ENST00000566756 MINK1Q8N4C8 1332 aaPredicted RBP21.82■■□□□ 1.08
CMTM3-213ENST00000566756 CABP2Q9NPB3 220 aa21.81■■□□□ 1.08
CMTM3-213ENST00000566756 DDRGK1Q96HY6 314 aa21.81■■□□□ 1.08
CMTM3-213ENST00000566756 DEKP35659 375 aaKnown RBP21.8■■□□□ 1.08
CMTM3-213ENST00000566756 APAF1O14727 1248 aa21.79■■□□□ 1.08
CMTM3-213ENST00000566756 PLPPR3Q6T4P5 718 aa21.79■■□□□ 1.08
CMTM3-213ENST00000566756 SRPK2P78362 688 aaKnown RBP21.79■■□□□ 1.08
CMTM3-213ENST00000566756 NSD3Q9BZ95 1437 aa21.79■■□□□ 1.08
CMTM3-213ENST00000566756 WAPLQ7Z5K2 1190 aa21.78■■□□□ 1.08
CMTM3-213ENST00000566756 TBX22Q9Y458 520 aa21.78■■□□□ 1.08
CMTM3-213ENST00000566756 CDK19Q9BWU1 502 aa21.78■■□□□ 1.08
CMTM3-213ENST00000566756 SHPRHQ149N8 1683 aa21.77■■□□□ 1.08
CMTM3-213ENST00000566756 RTL5Q5HYW3 569 aaPredicted RBP21.77■■□□□ 1.08
CMTM3-213ENST00000566756 NBR1Q14596 966 aa21.76■■□□□ 1.07
CMTM3-213ENST00000566756 NCBP3Q53F19 620 aaKnown RBP21.76■■□□□ 1.07
CMTM3-213ENST00000566756 CCDC146Q8IYE0 955 aa21.76■■□□□ 1.07
CMTM3-213ENST00000566756 USP35Q9P2H5 1018 aa21.76■■□□□ 1.07
CMTM3-213ENST00000566756 NPM2Q86SE8 214 aaKnown RBP21.75■■□□□ 1.07
CMTM3-213ENST00000566756 NSD2O96028 1365 aa21.74■■□□□ 1.07
CMTM3-213ENST00000566756 PDE3AQ14432 1141 aa21.74■■□□□ 1.07
CMTM3-213ENST00000566756 CGNL1Q0VF96 1302 aa21.74■■□□□ 1.07
CMTM3-213ENST00000566756 ADGRB2O60241 1585 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms