RNA–Protein interactions for RNA: ENST00000566466.1

SMPD3-207, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-207ENST00000566466 TMEM94Q12767 1356 aa13.17□□□□□ -0.3
SMPD3-207ENST00000566466 USP47Q96K76 1375 aa13.17□□□□□ -0.3
SMPD3-207ENST00000566466 TESK2Q96S53 571 aa13.16□□□□□ -0.3
SMPD3-207ENST00000566466 ADGRL3Q9HAR2 1447 aa13.15□□□□□ -0.3
SMPD3-207ENST00000566466 PRAM1Q96QH2 718 aa13.15□□□□□ -0.3
SMPD3-207ENST00000566466 QRICH2Q9H0J4 1663 aa13.15□□□□□ -0.31
SMPD3-207ENST00000566466 SBNO2Q9Y2G9 1366 aa13.14□□□□□ -0.31
SMPD3-207ENST00000566466 CDC42BPGQ6DT37 1551 aa13.14□□□□□ -0.31
SMPD3-207ENST00000566466 NCOA3Q9Y6Q9 1424 aa13.13□□□□□ -0.31
SMPD3-207ENST00000566466 ZEB1P37275 1124 aaPredicted RBP13.12□□□□□ -0.31
SMPD3-207ENST00000566466 USP32Q8NFA0 1604 aa13.11□□□□□ -0.31
SMPD3-207ENST00000566466 ST20-MTHFSA0A0A6YYL1 179 aa13.11□□□□□ -0.31
SMPD3-207ENST00000566466 HSPA5P11021 654 aaKnown RBP13.11□□□□□ -0.31
SMPD3-207ENST00000566466 CENPJQ9HC77 1338 aaPredicted RBP13.11□□□□□ -0.31
SMPD3-207ENST00000566466 NPM3O75607 178 aaKnown RBP13.1□□□□□ -0.31
SMPD3-207ENST00000566466 DCCP43146 1447 aa13.1□□□□□ -0.31
SMPD3-207ENST00000566466 DISP3Q9P2K9 1392 aa13.09□□□□□ -0.31
SMPD3-207ENST00000566466 SAFB2Q14151 953 aaKnown RBP eCLIP13.09□□□□□ -0.31
SMPD3-207ENST00000566466 PROSER2Q86WR7 435 aaPredicted RBP13.09□□□□□ -0.31
SMPD3-207ENST00000566466 FMN2Q9NZ56 1722 aa13.09□□□□□ -0.31
SMPD3-207ENST00000566466 IQSEC2Q5JU85 1478 aa13.09□□□□□ -0.31
SMPD3-207ENST00000566466 EIF3AQ14152 1382 aaKnown RBP13.08□□□□□ -0.31
SMPD3-207ENST00000566466 MST1RQ04912 1400 aa13.08□□□□□ -0.32
SMPD3-207ENST00000566466 MAPK8IP2Q13387 824 aaPredicted RBP13.08□□□□□ -0.32
SMPD3-207ENST00000566466 CNKSR2Q8WXI2 1034 aa13.08□□□□□ -0.32
SMPD3-207ENST00000566466 ATP7BP35670 1465 aa13.08□□□□□ -0.32
SMPD3-207ENST00000566466 PRR36Q9H6K5 1346 aa13.08□□□□□ -0.32
SMPD3-207ENST00000566466 C11orf95C9JLR9 678 aaPredicted RBP13.07□□□□□ -0.32
SMPD3-207ENST00000566466 HIRIP3Q9BW71 556 aaPredicted RBP13.07□□□□□ -0.32
SMPD3-207ENST00000566466 MINK1Q8N4C8 1332 aaPredicted RBP13.07□□□□□ -0.32
SMPD3-207ENST00000566466 TOPAZ1Q8N9V7 1692 aa13.06□□□□□ -0.32
SMPD3-207ENST00000566466 EIF4G2P78344 907 aaKnown RBP eCLIP13.05□□□□□ -0.32
SMPD3-207ENST00000566466 POGKQ9P215 609 aa13.05□□□□□ -0.32
SMPD3-207ENST00000566466 CERKQ8TCT0 537 aa13.04□□□□□ -0.32
SMPD3-207ENST00000566466 C19orf44Q9H6X5 657 aa13.04□□□□□ -0.32
SMPD3-207ENST00000566466 MYOM1P52179 1685 aa13.03□□□□□ -0.32
SMPD3-207ENST00000566466 WASLO00401 505 aaPredicted RBP13.03□□□□□ -0.32
SMPD3-207ENST00000566466 ANKARQ7Z5J8 1434 aa13.03□□□□□ -0.32
SMPD3-207ENST00000566466 C1orf167Q5SNV9 1468 aa13.03□□□□□ -0.32
SMPD3-207ENST00000566466 MSH6P52701 1360 aa13.02□□□□□ -0.33
SMPD3-207ENST00000566466 CD163L1Q9NR16 1453 aa13.02□□□□□ -0.33
SMPD3-207ENST00000566466 CDK19Q9BWU1 502 aa13.01□□□□□ -0.33
SMPD3-207ENST00000566466 KIF7Q2M1P5 1343 aa12.99□□□□□ -0.33
SMPD3-207ENST00000566466 WASHC2AQ641Q2 1341 aa12.99□□□□□ -0.33
SMPD3-207ENST00000566466 CABP2Q9NPB3 220 aa12.99□□□□□ -0.33
SMPD3-207ENST00000566466 RGPD8O14715 1765 aaPredicted RBP12.99□□□□□ -0.33
SMPD3-207ENST00000566466 CCDC7Q96M83 1385 aa12.97□□□□□ -0.33
SMPD3-207ENST00000566466 EVC2Q86UK5 1308 aa12.97□□□□□ -0.33
SMPD3-207ENST00000566466 NUTM2FA1L443 756 aa12.97□□□□□ -0.33
SMPD3-207ENST00000566466 ORAI2Q96SN7 254 aa12.97□□□□□ -0.33
SMPD3-207ENST00000566466 BRINP3Q76B58 766 aa12.96□□□□□ -0.33
SMPD3-207ENST00000566466 CADPS2Q86UW7 1296 aa12.96□□□□□ -0.33
SMPD3-207ENST00000566466 NUDT16Q96DE0 195 aaKnown RBP12.96□□□□□ -0.33
SMPD3-207ENST00000566466 PUS7Q96PZ0 661 aaKnown RBP12.96□□□□□ -0.33
SMPD3-207ENST00000566466 CPSF1Q10570 1443 aaKnown RBP12.96□□□□□ -0.34
SMPD3-207ENST00000566466 ROBO1Q9Y6N7 1651 aa12.96□□□□□ -0.34
SMPD3-207ENST00000566466 POLR3AO14802 1390 aaPredicted RBP12.95□□□□□ -0.34
SMPD3-207ENST00000566466 C14orf37Q86TY3 774 aa12.95□□□□□ -0.34
SMPD3-207ENST00000566466 NHSL1Q5SYE7 1610 aa12.95□□□□□ -0.34
SMPD3-207ENST00000566466 ATAD2Q6PL18 1390 aa12.94□□□□□ -0.34
SMPD3-207ENST00000566466 NRKQ7Z2Y5 1582 aa12.94□□□□□ -0.34
SMPD3-207ENST00000566466 PXDNQ92626 1479 aa12.94□□□□□ -0.34
SMPD3-207ENST00000566466 TMF1P82094 1093 aa12.94□□□□□ -0.34
SMPD3-207ENST00000566466 SLAIN2Q9P270 581 aa12.94□□□□□ -0.34
SMPD3-207ENST00000566466 PPIP5K1Q6PFW1 1433 aa12.94□□□□□ -0.34
SMPD3-207ENST00000566466 SSH2Q76I76 1423 aa12.94□□□□□ -0.34
SMPD3-207ENST00000566466 ITSN1Q15811 1721 aa12.93□□□□□ -0.34
SMPD3-207ENST00000566466 KIF1AQ12756 1690 aa12.93□□□□□ -0.34
SMPD3-207ENST00000566466 AHDC1Q5TGY3 1603 aaPredicted RBP12.93□□□□□ -0.34
SMPD3-207ENST00000566466 PLEKHG3A1L390 1219 aa12.93□□□□□ -0.34
SMPD3-207ENST00000566466 ATF3P18847 181 aa12.93□□□□□ -0.34
SMPD3-207ENST00000566466 SRPK2P78362 688 aaKnown RBP12.92□□□□□ -0.34
SMPD3-207ENST00000566466 DDX17Q92841 729 aaKnown RBP12.92□□□□□ -0.34
SMPD3-207ENST00000566466 TRPM3Q9HCF6 1732 aaPredicted RBP12.92□□□□□ -0.34
SMPD3-207ENST00000566466 CCDC61Q9Y6R9 512 aa12.92□□□□□ -0.34
SMPD3-207ENST00000566466 A0A1W2PP64 1363 aa12.92□□□□□ -0.34
SMPD3-207ENST00000566466 AKAP12Q02952 1782 aa12.92□□□□□ -0.34
SMPD3-207ENST00000566466 SLC12A5Q9H2X9 1139 aa12.91□□□□□ -0.34
SMPD3-207ENST00000566466 CABP1Q9NZU7 370 aa12.91□□□□□ -0.34
SMPD3-207ENST00000566466 COL16A1Q07092 1604 aaPredicted RBP12.91□□□□□ -0.34
SMPD3-207ENST00000566466 MON2Q7Z3U7 1717 aa12.91□□□□□ -0.34
SMPD3-207ENST00000566466 UBAP1LF5GYI3 381 aa12.9□□□□□ -0.34
SMPD3-207ENST00000566466 USP6P35125 1406 aa12.89□□□□□ -0.35
SMPD3-207ENST00000566466 PMFBP1Q8TBY8 1022 aa12.89□□□□□ -0.35
SMPD3-207ENST00000566466 PHF8Q9UPP1 1060 aa12.89□□□□□ -0.35
SMPD3-207ENST00000566466 ANKRD36BQ8N2N9 1353 aa12.89□□□□□ -0.35
SMPD3-207ENST00000566466 NINLQ9Y2I6 1382 aa12.89□□□□□ -0.35
SMPD3-207ENST00000566466 ACEP12821 1306 aa12.88□□□□□ -0.35
SMPD3-207ENST00000566466 SLC24A1O60721 1099 aa12.88□□□□□ -0.35
SMPD3-207ENST00000566466 ESCO1Q5FWF5 840 aa12.88□□□□□ -0.35
SMPD3-207ENST00000566466 CARD14Q9BXL6 1004 aa12.88□□□□□ -0.35
SMPD3-207ENST00000566466 SOS2Q07890 1332 aaPredicted RBP12.88□□□□□ -0.35
SMPD3-207ENST00000566466 TOM1O60784 492 aa12.87□□□□□ -0.35
SMPD3-207ENST00000566466 MARF1Q9Y4F3 1742 aaKnown RBP12.87□□□□□ -0.35
SMPD3-207ENST00000566466 ALS2Q96Q42 1657 aa12.86□□□□□ -0.35
SMPD3-207ENST00000566466 FOXO3O43524 673 aa12.86□□□□□ -0.35
SMPD3-207ENST00000566466 PIK3C2AO00443 1686 aa12.86□□□□□ -0.35
SMPD3-207ENST00000566466 ZNF316A6NFI3 1004 aaPredicted RBP12.85□□□□□ -0.35
SMPD3-207ENST00000566466 PIP4K2BP78356 416 aa12.85□□□□□ -0.35
SMPD3-207ENST00000566466 CDCA8Q53HL2 280 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms