RNA–Protein interactions for RNA: ENST00000565517.5

COMMD4-212, Transcript of COMM domain containing 4, humanhuman

TSL 4

Gene COMMD4, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-212ENST00000565517 PLEKHH1Q9ULM0 1364 aa22.28■■□□□ 1.16
COMMD4-212ENST00000565517 C1orf167Q5SNV9 1468 aa22.27■■□□□ 1.16
COMMD4-212ENST00000565517 PRAM1Q96QH2 718 aa22.25■■□□□ 1.15
COMMD4-212ENST00000565517 TRAK1Q9UPV9 953 aa22.24■■□□□ 1.15
COMMD4-212ENST00000565517 COL16A1Q07092 1604 aaPredicted RBP22.24■■□□□ 1.15
COMMD4-212ENST00000565517 NHSL1Q5SYE7 1610 aa22.24■■□□□ 1.15
COMMD4-212ENST00000565517 POGKQ9P215 609 aa22.23■■□□□ 1.15
COMMD4-212ENST00000565517 FMN2Q9NZ56 1722 aa22.22■■□□□ 1.15
COMMD4-212ENST00000565517 ARHGEF28Q8N1W1 1705 aaKnown RBP22.21■■□□□ 1.15
COMMD4-212ENST00000565517 PCGF6Q9BYE7 350 aa22.21■■□□□ 1.15
COMMD4-212ENST00000565517 JCADQ9P266 1359 aa22.19■■□□□ 1.14
COMMD4-212ENST00000565517 MED1Q15648 1581 aaPredicted RBP22.19■■□□□ 1.14
COMMD4-212ENST00000565517 ADGRB2O60241 1585 aa22.18■■□□□ 1.14
COMMD4-212ENST00000565517 DISP3Q9P2K9 1392 aa22.18■■□□□ 1.14
COMMD4-212ENST00000565517 NBPF1Q3BBV0 1214 aa22.18■■□□□ 1.14
COMMD4-212ENST00000565517 ORAI2Q96SN7 254 aa22.18■■□□□ 1.14
COMMD4-212ENST00000565517 SAFB2Q14151 953 aaKnown RBP eCLIP22.17■■□□□ 1.14
COMMD4-212ENST00000565517 TRPM1Q7Z4N2 1603 aa22.17■■□□□ 1.14
COMMD4-212ENST00000565517 RGPD8O14715 1765 aaPredicted RBP22.15■■□□□ 1.14
COMMD4-212ENST00000565517 TONSLQ96HA7 1378 aa22.14■■□□□ 1.14
COMMD4-212ENST00000565517 SHPRHQ149N8 1683 aa22.14■■□□□ 1.14
COMMD4-212ENST00000565517 ESCO1Q5FWF5 840 aa22.14■■□□□ 1.13
COMMD4-212ENST00000565517 LRRC59Q96AG4 307 aaKnown RBP22.13■■□□□ 1.13
COMMD4-212ENST00000565517 SOS2Q07890 1332 aaPredicted RBP22.11■■□□□ 1.13
COMMD4-212ENST00000565517 CLSPNQ9HAW4 1339 aa22.11■■□□□ 1.13
COMMD4-212ENST00000565517 KIF1AQ12756 1690 aa22.11■■□□□ 1.13
COMMD4-212ENST00000565517 NUTM2FA1L443 756 aa22.11■■□□□ 1.13
COMMD4-212ENST00000565517 DDX17Q92841 729 aaKnown RBP22.11■■□□□ 1.13
COMMD4-212ENST00000565517 SPATA31A6Q5VVP1 1343 aa22.1■■□□□ 1.13
COMMD4-212ENST00000565517 NPHP3Q7Z494 1330 aa22.1■■□□□ 1.13
COMMD4-212ENST00000565517 MINK1Q8N4C8 1332 aaPredicted RBP22.1■■□□□ 1.13
COMMD4-212ENST00000565517 ANKARQ7Z5J8 1434 aa22.1■■□□□ 1.13
COMMD4-212ENST00000565517 EIF3AQ14152 1382 aaKnown RBP22.1■■□□□ 1.13
COMMD4-212ENST00000565517 NBPF8Q3BBV2 869 aa22.09■■□□□ 1.13
COMMD4-212ENST00000565517 WASLO00401 505 aaPredicted RBP22.08■■□□□ 1.13
COMMD4-212ENST00000565517 HIRIP3Q9BW71 556 aaPredicted RBP22.08■■□□□ 1.13
COMMD4-212ENST00000565517 USP32Q8NFA0 1604 aa22.07■■□□□ 1.12
COMMD4-212ENST00000565517 ROCK2O75116 1388 aaKnown RBP22.07■■□□□ 1.12
COMMD4-212ENST00000565517 FOXO3O43524 673 aa22.06■■□□□ 1.12
COMMD4-212ENST00000565517 TULP4Q9NRJ4 1543 aa22.06■■□□□ 1.12
COMMD4-212ENST00000565517 GPRASP1Q5JY77 1395 aa22.05■■□□□ 1.12
COMMD4-212ENST00000565517 PHF8Q9UPP1 1060 aa22.05■■□□□ 1.12
COMMD4-212ENST00000565517 CENPJQ9HC77 1338 aaPredicted RBP22.05■■□□□ 1.12
COMMD4-212ENST00000565517 PXDNQ92626 1479 aa22.04■■□□□ 1.12
COMMD4-212ENST00000565517 PHF23Q9BUL5 403 aaPredicted RBP22.03■■□□□ 1.12
COMMD4-212ENST00000565517 PNPLA6Q8IY17 1366 aa22.02■■□□□ 1.12
COMMD4-212ENST00000565517 QRICH2Q9H0J4 1663 aa22.01■■□□□ 1.11
COMMD4-212ENST00000565517 ITSN1Q15811 1721 aa22.01■■□□□ 1.11
COMMD4-212ENST00000565517 TIMELESSQ9UNS1 1208 aa22.01■■□□□ 1.11
COMMD4-212ENST00000565517 RALGAPBQ86X10 1494 aa22.01■■□□□ 1.11
COMMD4-212ENST00000565517 PRR36Q9H6K5 1346 aa22.01■■□□□ 1.11
COMMD4-212ENST00000565517 CDK19Q9BWU1 502 aa22■■□□□ 1.11
COMMD4-212ENST00000565517 LRP6O75581 1613 aa21.98■■□□□ 1.11
COMMD4-212ENST00000565517 COL22A1Q8NFW1 1626 aaPredicted RBP21.98■■□□□ 1.11
COMMD4-212ENST00000565517 KRT28Q7Z3Y7 464 aa21.98■■□□□ 1.11
COMMD4-212ENST00000565517 ATP7BP35670 1465 aa21.97■■□□□ 1.11
COMMD4-212ENST00000565517 PSME1Q06323 249 aa21.97■■□□□ 1.11
COMMD4-212ENST00000565517 NUDT16Q96DE0 195 aaKnown RBP21.97■■□□□ 1.11
COMMD4-212ENST00000565517 XPCQ01831 940 aaPredicted RBP21.96■■□□□ 1.11
COMMD4-212ENST00000565517 PMFBP1Q8TBY8 1022 aa21.96■■□□□ 1.11
COMMD4-212ENST00000565517 CARD11Q9BXL7 1154 aa21.96■■□□□ 1.11
COMMD4-212ENST00000565517 RGS17Q9UGC6 210 aaPredicted RBP21.95■■□□□ 1.1
COMMD4-212ENST00000565517 SPATA31A3Q5VYP0 1347 aa21.95■■□□□ 1.1
COMMD4-212ENST00000565517 NUTM2BA6NNL0 878 aaPredicted RBP21.94■■□□□ 1.1
COMMD4-212ENST00000565517 NUTM2EB1AL46 878 aaPredicted RBP21.94■■□□□ 1.1
COMMD4-212ENST00000565517 ILDR2Q71H61 639 aa21.94■■□□□ 1.1
COMMD4-212ENST00000565517 NUTM2AQ8IVF1 878 aaPredicted RBP21.94■■□□□ 1.1
COMMD4-212ENST00000565517 CCDC61Q9Y6R9 512 aa21.94■■□□□ 1.1
COMMD4-212ENST00000565517 SBNO1A3KN83 1393 aa21.94■■□□□ 1.1
COMMD4-212ENST00000565517 TOPAZ1Q8N9V7 1692 aa21.94■■□□□ 1.1
COMMD4-212ENST00000565517 MEX3CQ5U5Q3 659 aaKnown RBP21.93■■□□□ 1.1
COMMD4-212ENST00000565517 CCER1Q8TC90 406 aaPredicted RBP21.92■■□□□ 1.1
COMMD4-212ENST00000565517 SBNO2Q9Y2G9 1366 aa21.9■■□□□ 1.1
COMMD4-212ENST00000565517 EVC2Q86UK5 1308 aa21.9■■□□□ 1.1
COMMD4-212ENST00000565517 TRPM3Q9HCF6 1732 aaPredicted RBP21.9■■□□□ 1.1
COMMD4-212ENST00000565517 PLEKHG3A1L390 1219 aa21.9■■□□□ 1.1
COMMD4-212ENST00000565517 SRPK2P78362 688 aaKnown RBP21.9■■□□□ 1.1
COMMD4-212ENST00000565517 NGDNQ8NEJ9 315 aaKnown RBP21.9■■□□□ 1.1
COMMD4-212ENST00000565517 TNS3Q68CZ2 1445 aa21.89■■□□□ 1.1
COMMD4-212ENST00000565517 POLR3AO14802 1390 aaPredicted RBP21.87■■□□□ 1.09
COMMD4-212ENST00000565517 CABP2Q9NPB3 220 aa21.87■■□□□ 1.09
COMMD4-212ENST00000565517 ARHGEF10O15013 1369 aa21.87■■□□□ 1.09
COMMD4-212ENST00000565517 MARF1Q9Y4F3 1742 aaKnown RBP21.86■■□□□ 1.09
COMMD4-212ENST00000565517 ZNF772Q68DY9 489 aaPredicted RBP21.86■■□□□ 1.09
COMMD4-212ENST00000565517 ALS2Q96Q42 1657 aa21.85■■□□□ 1.09
COMMD4-212ENST00000565517 ACEP12821 1306 aa21.84■■□□□ 1.09
COMMD4-212ENST00000565517 PPIP5K1Q6PFW1 1433 aa21.84■■□□□ 1.09
COMMD4-212ENST00000565517 POTEAQ6S8J7 498 aa21.84■■□□□ 1.09
COMMD4-212ENST00000565517 ADAMTS2O95450 1211 aa21.83■■□□□ 1.09
COMMD4-212ENST00000565517 C8orf37Q96NL8 207 aa21.82■■□□□ 1.08
COMMD4-212ENST00000565517 AFF2P51816 1311 aa21.81■■□□□ 1.08
COMMD4-212ENST00000565517 SLC24A1O60721 1099 aa21.81■■□□□ 1.08
COMMD4-212ENST00000565517 LMOD2Q6P5Q4 547 aa21.81■■□□□ 1.08
COMMD4-212ENST00000565517 NGLY1Q96IV0 654 aa21.8■■□□□ 1.08
COMMD4-212ENST00000565517 BRD4O60885 1362 aaPredicted RBP21.79■■□□□ 1.08
COMMD4-212ENST00000565517 ATAD2Q6PL18 1390 aa21.79■■□□□ 1.08
COMMD4-212ENST00000565517 CABP1Q9NZU7 370 aa21.79■■□□□ 1.08
COMMD4-212ENST00000565517 ABCA3Q99758 1704 aa21.79■■□□□ 1.08
COMMD4-212ENST00000565517 ST20-MTHFSA0A0A6YYL1 179 aa21.78■■□□□ 1.08
COMMD4-212ENST00000565517 PAK3O75914 559 aaPredicted RBP21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms