RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-215ENST00000565442 NLRP7Q8WX94 980 aa10.86□□□□□ -0.67
CHD9-215ENST00000565442 WNT7AO00755 349 aa10.84□□□□□ -0.67
CHD9-215ENST00000565442 RNF19BQ6ZMZ0 732 aa10.84□□□□□ -0.67
CHD9-215ENST00000565442 GPR37O15354 613 aa10.83□□□□□ -0.68
CHD9-215ENST00000565442 STK17AQ9UEE5 414 aa10.83□□□□□ -0.68
CHD9-215ENST00000565442 TESPA1A2RU30 521 aaPredicted RBP10.82□□□□□ -0.68
CHD9-215ENST00000565442 WIPF1O43516 503 aa10.82□□□□□ -0.68
CHD9-215ENST00000565442 SMPD1P17405 629 aa10.82□□□□□ -0.68
CHD9-215ENST00000565442 SNIP1Q8TAD8 396 aaKnown RBP10.82□□□□□ -0.68
CHD9-215ENST00000565442 TRIM32Q13049 653 aa10.81□□□□□ -0.68
CHD9-215ENST00000565442 SMYD5Q6GMV2 418 aa10.81□□□□□ -0.68
CHD9-215ENST00000565442 ATP13A2Q9NQ11 1180 aa10.81□□□□□ -0.68
CHD9-215ENST00000565442 GRIPAP1Q4V328 841 aa10.8□□□□□ -0.68
CHD9-215ENST00000565442 PHOX2BQ99453 314 aa10.8□□□□□ -0.68
CHD9-215ENST00000565442 INSM1Q01101 510 aaPredicted RBP10.79□□□□□ -0.68
CHD9-215ENST00000565442 MRGPRX2Q96LB1 330 aa10.78□□□□□ -0.68
CHD9-215ENST00000565442 SNRPBP14678 240 aaKnown RBP10.77□□□□□ -0.69
CHD9-215ENST00000565442 MMP16P51512 607 aa10.77□□□□□ -0.69
CHD9-215ENST00000565442 Q3C1V9 767 aa10.77□□□□□ -0.69
CHD9-215ENST00000565442 J3QL48 77 aa10.76□□□□□ -0.69
CHD9-215ENST00000565442 TRIM47Q96LD4 638 aa10.76□□□□□ -0.69
CHD9-215ENST00000565442 SENP2Q9HC62 589 aa10.76□□□□□ -0.69
CHD9-215ENST00000565442 LCE2CQ5TA81 110 aa10.75□□□□□ -0.69
CHD9-215ENST00000565442 TERTO14746 1132 aaKnown RBP10.74□□□□□ -0.69
CHD9-215ENST00000565442 REPIN1Q9BWE0 567 aaKnown RBP10.74□□□□□ -0.69
CHD9-215ENST00000565442 VSIG10Q8N0Z9 540 aa10.73□□□□□ -0.69
CHD9-215ENST00000565442 DXOO77932 396 aaKnown RBP10.72□□□□□ -0.69
CHD9-215ENST00000565442 HPS1Q92902 700 aa10.71□□□□□ -0.69
CHD9-215ENST00000565442 KIFC2Q96AC6 838 aa10.71□□□□□ -0.69
CHD9-215ENST00000565442 USB1Q9BQ65 265 aaKnown RBP10.71□□□□□ -0.69
CHD9-215ENST00000565442 CD46P15529 392 aa10.69□□□□□ -0.7
CHD9-215ENST00000565442 CCDC24Q8N4L8 307 aa10.68□□□□□ -0.7
CHD9-215ENST00000565442 KDM2AQ9Y2K7 1162 aa10.68□□□□□ -0.7
CHD9-215ENST00000565442 KDM4AO75164 1064 aa10.67□□□□□ -0.7
CHD9-215ENST00000565442 WNT7BP56706 349 aa10.67□□□□□ -0.7
CHD9-215ENST00000565442 RC3H1Q5TC82 1133 aaKnown RBP10.67□□□□□ -0.7
CHD9-215ENST00000565442 GPIHBP1Q8IV16 184 aa10.67□□□□□ -0.7
CHD9-215ENST00000565442 SKOR1P84550 965 aa10.66□□□□□ -0.7
CHD9-215ENST00000565442 HLA-CQ95604 372 aa10.63□□□□□ -0.71
CHD9-215ENST00000565442 ALDH1A1P00352 501 aa10.62□□□□□ -0.71
CHD9-215ENST00000565442 USP46P62068 366 aa10.62□□□□□ -0.71
CHD9-215ENST00000565442 SLC16A10Q8TF71 515 aa10.61□□□□□ -0.71
CHD9-215ENST00000565442 HOXA2O43364 376 aa10.59□□□□□ -0.71
CHD9-215ENST00000565442 JUNDP17535 347 aa10.59□□□□□ -0.71
CHD9-215ENST00000565442 MAP2K5Q13163 448 aa10.58□□□□□ -0.72
CHD9-215ENST00000565442 NXF1Q9UBU9 619 aaKnown RBP10.58□□□□□ -0.72
CHD9-215ENST00000565442 FAM181BA6NEQ2 426 aa10.57□□□□□ -0.72
CHD9-215ENST00000565442 BMP1P13497 986 aa10.56□□□□□ -0.72
CHD9-215ENST00000565442 MDM2Q00987 491 aaPredicted RBP10.56□□□□□ -0.72
CHD9-215ENST00000565442 GUCA2AQ02747 115 aa10.56□□□□□ -0.72
CHD9-215ENST00000565442 SIAH2O43255 324 aa10.55□□□□□ -0.72
CHD9-215ENST00000565442 TRIM46Q7Z4K8 759 aa10.55□□□□□ -0.72
CHD9-215ENST00000565442 EHBP1Q8NDI1 1231 aa10.55□□□□□ -0.72
CHD9-215ENST00000565442 GMPRP36959 345 aa10.54□□□□□ -0.72
CHD9-215ENST00000565442 NPAS3Q8IXF0 933 aa10.54□□□□□ -0.72
CHD9-215ENST00000565442 NUDT12Q9BQG2 462 aa10.54□□□□□ -0.72
CHD9-215ENST00000565442 CAPN5O15484 640 aaPredicted RBP10.53□□□□□ -0.72
CHD9-215ENST00000565442 SYMPKQ92797 1274 aaKnown RBP10.53□□□□□ -0.72
CHD9-215ENST00000565442 IRF7Q92985 503 aa10.53□□□□□ -0.72
CHD9-215ENST00000565442 WASF2Q9Y6W5 498 aa10.53□□□□□ -0.72
CHD9-215ENST00000565442 IRF6O14896 467 aa10.52□□□□□ -0.73
CHD9-215ENST00000565442 PTCRAQ6ISU1 281 aaPredicted RBP10.52□□□□□ -0.73
CHD9-215ENST00000565442 LORP23490 312 aaPredicted RBP10.51□□□□□ -0.73
CHD9-215ENST00000565442 RETREG3Q86VR2 466 aa10.51□□□□□ -0.73
CHD9-215ENST00000565442 ZSCAN1Q8NBB4 408 aa10.51□□□□□ -0.73
CHD9-215ENST00000565442 VEGFBP49765 207 aa10.49□□□□□ -0.73
CHD9-215ENST00000565442 BCANQ96GW7 911 aa10.49□□□□□ -0.73
CHD9-215ENST00000565442 H3BM21 787 aa10.48□□□□□ -0.73
CHD9-215ENST00000565442 SH3BP2P78314 561 aa10.47□□□□□ -0.73
CHD9-215ENST00000565442 GPCPD1Q9NPB8 672 aa10.47□□□□□ -0.73
CHD9-215ENST00000565442 MINK1Q8N4C8 1332 aaPredicted RBP10.47□□□□□ -0.73
CHD9-215ENST00000565442 CCNYL3P0C7X3 344 aa10.46□□□□□ -0.73
CHD9-215ENST00000565442 FAM217BQ9NTX9 383 aaPredicted RBP10.46□□□□□ -0.73
CHD9-215ENST00000565442 MS4A1P11836 297 aa10.45□□□□□ -0.74
CHD9-215ENST00000565442 NUTM1Q86Y26 1132 aa10.45□□□□□ -0.74
CHD9-215ENST00000565442 CCDC102AQ96A19 550 aa10.45□□□□□ -0.74
CHD9-215ENST00000565442 ERBB4Q15303 1308 aa10.44□□□□□ -0.74
CHD9-215ENST00000565442 CLCN1P35523 988 aa10.44□□□□□ -0.74
CHD9-215ENST00000565442 ZFP42Q96MM3 310 aa10.44□□□□□ -0.74
CHD9-215ENST00000565442 FDX1P10109 184 aa10.43□□□□□ -0.74
CHD9-215ENST00000565442 PCDHGC3Q9UN70 934 aa10.43□□□□□ -0.74
CHD9-215ENST00000565442 TLL2Q9Y6L7 1015 aa10.43□□□□□ -0.74
CHD9-215ENST00000565442 C6orf229H3BNL8 230 aa10.42□□□□□ -0.74
CHD9-215ENST00000565442 UNC93B1Q9H1C4 597 aa10.42□□□□□ -0.74
CHD9-215ENST00000565442 PTPRNQ16849 979 aa10.41□□□□□ -0.74
CHD9-215ENST00000565442 LINC01559Q495D7 138 aa10.4□□□□□ -0.74
CHD9-215ENST00000565442 NNTQ13423 1086 aa10.39□□□□□ -0.75
CHD9-215ENST00000565442 EVA1BQ9NVM1 165 aa10.39□□□□□ -0.75
CHD9-215ENST00000565442 PLEKHG3A1L390 1219 aa10.38□□□□□ -0.75
CHD9-215ENST00000565442 TULP1O00294 542 aaPredicted RBP10.38□□□□□ -0.75
CHD9-215ENST00000565442 BAP1Q92560 729 aa10.38□□□□□ -0.75
CHD9-215ENST00000565442 VARSP26640 1264 aaKnown RBP10.37□□□□□ -0.75
CHD9-215ENST00000565442 SCARF1Q14162 830 aa10.37□□□□□ -0.75
CHD9-215ENST00000565442 MRPL14Q6P1L8 145 aaKnown RBP10.37□□□□□ -0.75
CHD9-215ENST00000565442 MPNDQ8N594 471 aa10.37□□□□□ -0.75
CHD9-215ENST00000565442 KRI1Q8N9T8 703 aaKnown RBP10.37□□□□□ -0.75
CHD9-215ENST00000565442 ZNF511Q8NB15 262 aa10.37□□□□□ -0.75
CHD9-215ENST00000565442 KCNH2Q12809 1159 aa10.36□□□□□ -0.75
CHD9-215ENST00000565442 TIMP2P16035 220 aa10.35□□□□□ -0.75
CHD9-215ENST00000565442 PURBQ96QR8 312 aaKnown RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms