RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ANKRD30BQ9BXX2 1392 aa25.16■■□□□ 1.62
CLN3-217ENST00000565354 SOS2Q07890 1332 aaPredicted RBP25.15■■□□□ 1.62
CLN3-217ENST00000565354 USP21Q9UK80 565 aa25.14■■□□□ 1.62
CLN3-217ENST00000565354 ORAI2Q96SN7 254 aa25.13■■□□□ 1.61
CLN3-217ENST00000565354 RGL3Q3MIN7 710 aa25.12■■□□□ 1.61
CLN3-217ENST00000565354 TRPC5Q9UL62 973 aaPredicted RBP25.12■■□□□ 1.61
CLN3-217ENST00000565354 ROBO2Q9HCK4 1378 aa25.11■■□□□ 1.61
CLN3-217ENST00000565354 COL22A1Q8NFW1 1626 aaPredicted RBP25.11■■□□□ 1.61
CLN3-217ENST00000565354 EP400Q96L91 3159 aa25.11■■□□□ 1.61
CLN3-217ENST00000565354 FNBP4Q8N3X1 1017 aaPredicted RBP25.1■■□□□ 1.61
CLN3-217ENST00000565354 RPGRIP1LQ68CZ1 1315 aa25.1■■□□□ 1.61
CLN3-217ENST00000565354 PRAG1Q86YV5 1406 aa25.09■■□□□ 1.61
CLN3-217ENST00000565354 ATRNO75882 1429 aa25.08■■□□□ 1.61
CLN3-217ENST00000565354 DHX57Q6P158 1386 aaKnown RBP25.07■■□□□ 1.6
CLN3-217ENST00000565354 VGFO15240 615 aaPredicted RBP25.07■■□□□ 1.6
CLN3-217ENST00000565354 SPATA31E1Q6ZUB1 1445 aa25.06■■□□□ 1.6
CLN3-217ENST00000565354 MARF1Q9Y4F3 1742 aaKnown RBP25.04■■□□□ 1.6
CLN3-217ENST00000565354 MYOM2P54296 1465 aa25.03■■□□□ 1.6
CLN3-217ENST00000565354 ZRANB1Q9UGI0 708 aa25.03■■□□□ 1.6
CLN3-217ENST00000565354 PPLO60437 1756 aa25.03■■□□□ 1.6
CLN3-217ENST00000565354 NPHP3Q7Z494 1330 aa25■■□□□ 1.59
CLN3-217ENST00000565354 BCL9LQ86UU0 1499 aa25■■□□□ 1.59
CLN3-217ENST00000565354 CDC42BPGQ6DT37 1551 aa24.99■■□□□ 1.59
CLN3-217ENST00000565354 PXDNQ92626 1479 aa24.98■■□□□ 1.59
CLN3-217ENST00000565354 CCDC125Q86Z20 511 aa24.98■■□□□ 1.59
CLN3-217ENST00000565354 IFT172Q9UG01 1749 aa24.97■■□□□ 1.59
CLN3-217ENST00000565354 ESCO1Q5FWF5 840 aa24.96■■□□□ 1.59
CLN3-217ENST00000565354 NEUROD1Q13562 356 aa24.94■■□□□ 1.58
CLN3-217ENST00000565354 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.94■■□□□ 1.58
CLN3-217ENST00000565354 GJD4Q96KN9 370 aaPredicted RBP24.93■■□□□ 1.58
CLN3-217ENST00000565354 SIN3AQ96ST3 1273 aa24.93■■□□□ 1.58
CLN3-217ENST00000565354 FOXO3O43524 673 aa24.92■■□□□ 1.58
CLN3-217ENST00000565354 DCAF11Q8TEB1 546 aa24.92■■□□□ 1.58
CLN3-217ENST00000565354 ADGRF5Q8IZF2 1346 aa24.91■■□□□ 1.58
CLN3-217ENST00000565354 XPCQ01831 940 aaPredicted RBP24.91■■□□□ 1.58
CLN3-217ENST00000565354 KDM2AQ9Y2K7 1162 aa24.91■■□□□ 1.58
CLN3-217ENST00000565354 LRPPRCP42704 1394 aaKnown RBP24.9■■□□□ 1.58
CLN3-217ENST00000565354 GLI3P10071 1580 aa24.86■■□□□ 1.57
CLN3-217ENST00000565354 STAC3Q96MF2 364 aa24.86■■□□□ 1.57
CLN3-217ENST00000565354 RALGAPBQ86X10 1494 aa24.85■■□□□ 1.57
CLN3-217ENST00000565354 UNC5CLQ8IV45 518 aa24.85■■□□□ 1.57
CLN3-217ENST00000565354 SLIT2O94813 1529 aa24.85■■□□□ 1.57
CLN3-217ENST00000565354 TECPR2O15040 1411 aa24.85■■□□□ 1.57
CLN3-217ENST00000565354 BRWD3Q6RI45 1802 aa24.84■■□□□ 1.57
CLN3-217ENST00000565354 PIK3C2GO75747 1445 aa24.84■■□□□ 1.57
CLN3-217ENST00000565354 BLMP54132 1417 aaPredicted RBP24.84■■□□□ 1.57
CLN3-217ENST00000565354 NUTM2FA1L443 756 aa24.83■■□□□ 1.57
CLN3-217ENST00000565354 WAPLQ7Z5K2 1190 aa24.82■■□□□ 1.56
CLN3-217ENST00000565354 FMN2Q9NZ56 1722 aa24.82■■□□□ 1.56
CLN3-217ENST00000565354 SPATA31A3Q5VYP0 1347 aa24.82■■□□□ 1.56
CLN3-217ENST00000565354 KIF1AQ12756 1690 aa24.81■■□□□ 1.56
CLN3-217ENST00000565354 KNDC1Q76NI1 1749 aa24.81■■□□□ 1.56
CLN3-217ENST00000565354 CCER1Q8TC90 406 aaPredicted RBP24.81■■□□□ 1.56
CLN3-217ENST00000565354 STK26Q9P289 416 aa24.81■■□□□ 1.56
CLN3-217ENST00000565354 USP32Q8NFA0 1604 aa24.81■■□□□ 1.56
CLN3-217ENST00000565354 NRXN1Q9ULB1 1477 aa24.8■■□□□ 1.56
CLN3-217ENST00000565354 TONSLQ96HA7 1378 aa24.79■■□□□ 1.56
CLN3-217ENST00000565354 ABCC11Q96J66 1382 aa24.79■■□□□ 1.56
CLN3-217ENST00000565354 L3MBTL2Q969R5 705 aa24.78■■□□□ 1.56
CLN3-217ENST00000565354 CFAP70Q5T0N1 1121 aa24.77■■□□□ 1.56
CLN3-217ENST00000565354 PLEKHH1Q9ULM0 1364 aa24.77■■□□□ 1.56
CLN3-217ENST00000565354 KRT28Q7Z3Y7 464 aa24.75■■□□□ 1.55
CLN3-217ENST00000565354 C14orf93Q9H972 538 aaKnown RBP24.75■■□□□ 1.55
CLN3-217ENST00000565354 CLSPNQ9HAW4 1339 aa24.75■■□□□ 1.55
CLN3-217ENST00000565354 RGPD8O14715 1765 aaPredicted RBP24.75■■□□□ 1.55
CLN3-217ENST00000565354 TMEM132EQ6IEE7 984 aa24.74■■□□□ 1.55
CLN3-217ENST00000565354 DEFB132Q7Z7B7 95 aa24.74■■□□□ 1.55
CLN3-217ENST00000565354 NWD2Q9ULI1 1742 aa24.74■■□□□ 1.55
CLN3-217ENST00000565354 PLCH1Q4KWH8 1693 aa24.73■■□□□ 1.55
CLN3-217ENST00000565354 SF3B2Q13435 895 aaKnown RBP24.73■■□□□ 1.55
CLN3-217ENST00000565354 SEPT12Q8IYM1 358 aa24.73■■□□□ 1.55
CLN3-217ENST00000565354 VPS72Q15906 364 aa24.72■■□□□ 1.55
CLN3-217ENST00000565354 TNS3Q68CZ2 1445 aa24.71■■□□□ 1.55
CLN3-217ENST00000565354 YTHDC2Q9H6S0 1430 aaKnown RBP24.7■■□□□ 1.55
CLN3-217ENST00000565354 HAP1P54257 671 aaPredicted RBP24.7■■□□□ 1.54
CLN3-217ENST00000565354 LRP5O75197 1615 aa24.7■■□□□ 1.54
CLN3-217ENST00000565354 ABCA3Q99758 1704 aa24.69■■□□□ 1.54
CLN3-217ENST00000565354 ONECUT3O60422 494 aaPredicted RBP24.68■■□□□ 1.54
CLN3-217ENST00000565354 PSME1Q06323 249 aa24.68■■□□□ 1.54
CLN3-217ENST00000565354 CABLES1Q8TDN4 633 aa24.67■■□□□ 1.54
CLN3-217ENST00000565354 PHF8Q9UPP1 1060 aa24.67■■□□□ 1.54
CLN3-217ENST00000565354 KRT27Q7Z3Y8 459 aa24.66■■□□□ 1.54
CLN3-217ENST00000565354 SIRT1Q96EB6 747 aa24.66■■□□□ 1.54
CLN3-217ENST00000565354 CCDC9Q9Y3X0 531 aaKnown RBP24.65■■□□□ 1.54
CLN3-217ENST00000565354 SBNO1A3KN83 1393 aa24.65■■□□□ 1.54
CLN3-217ENST00000565354 KIAA1210Q9ULL0 1709 aa24.64■■□□□ 1.53
CLN3-217ENST00000565354 ARHGEF10O15013 1369 aa24.63■■□□□ 1.53
CLN3-217ENST00000565354 PLEKHG5O94827 1062 aa24.62■■□□□ 1.53
CLN3-217ENST00000565354 LMOD2Q6P5Q4 547 aa24.61■■□□□ 1.53
CLN3-217ENST00000565354 ADGRB1O14514 1584 aa24.6■■□□□ 1.53
CLN3-217ENST00000565354 NRAPQ86VF7 1730 aa24.59■■□□□ 1.53
CLN3-217ENST00000565354 FAM83GA6ND36 823 aa24.59■■□□□ 1.53
CLN3-217ENST00000565354 TRAK1Q9UPV9 953 aa24.59■■□□□ 1.53
CLN3-217ENST00000565354 BAG6P46379 1132 aa24.58■■□□□ 1.53
CLN3-217ENST00000565354 POGKQ9P215 609 aa24.57■■□□□ 1.52
CLN3-217ENST00000565354 A0A0G2JS52 829 aa24.56■■□□□ 1.52
CLN3-217ENST00000565354 MYT1Q01538 1121 aa24.56■■□□□ 1.52
CLN3-217ENST00000565354 NBPF1Q3BBV0 1214 aa24.56■■□□□ 1.52
CLN3-217ENST00000565354 TIMELESSQ9UNS1 1208 aa24.56■■□□□ 1.52
CLN3-217ENST00000565354 TRPM1Q7Z4N2 1603 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms